HEADER LIGASE 22-FEB-17 5N81 TITLE CRYSTAL STRUCTURE OF AN ENGINEERED TYCA VARIANT IN COMPLEX WITH AN O- TITLE 2 PROPARGYL-BETA-TYR-AMP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROCIDINE SYNTHASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROCIDINE SYNTHASE I; COMPND 5 EC: 5.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 3 ORGANISM_TAXID: 54914; SOURCE 4 GENE: TYCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, ADENYLATION DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.L.NIQUILLE,D.A.HANSEN,T.MORI,D.FERCHER,H.KRIES,D.HILVERT REVDAT 3 17-JAN-24 5N81 1 REMARK REVDAT 2 28-FEB-18 5N81 1 JRNL REVDAT 1 13-DEC-17 5N81 0 JRNL AUTH D.L.NIQUILLE,D.A.HANSEN,T.MORI,D.FERCHER,H.KRIES,D.HILVERT JRNL TITL NONRIBOSOMAL BIOSYNTHESIS OF BACKBONE-MODIFIED PEPTIDES. JRNL REF NAT CHEM V. 10 282 2018 JRNL REFN ESSN 1755-4349 JRNL PMID 29461527 JRNL DOI 10.1038/NCHEM.2891 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 118611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2059 - 3.8554 1.00 8781 154 0.1586 0.1570 REMARK 3 2 3.8554 - 3.0604 1.00 8479 149 0.1610 0.1840 REMARK 3 3 3.0604 - 2.6736 1.00 8407 147 0.1785 0.2237 REMARK 3 4 2.6736 - 2.4292 1.00 8353 139 0.1846 0.1930 REMARK 3 5 2.4292 - 2.2551 1.00 8334 141 0.1766 0.2037 REMARK 3 6 2.2551 - 2.1221 1.00 8252 148 0.1704 0.1931 REMARK 3 7 2.1221 - 2.0158 1.00 8298 139 0.1745 0.2210 REMARK 3 8 2.0158 - 1.9281 1.00 8261 143 0.1787 0.2338 REMARK 3 9 1.9281 - 1.8539 1.00 8293 138 0.1824 0.2350 REMARK 3 10 1.8539 - 1.7899 1.00 8244 143 0.1929 0.2201 REMARK 3 11 1.7899 - 1.7339 1.00 8221 145 0.1983 0.2251 REMARK 3 12 1.7339 - 1.6844 1.00 8257 139 0.2087 0.2557 REMARK 3 13 1.6844 - 1.6400 1.00 8223 145 0.2297 0.3013 REMARK 3 14 1.6400 - 1.6000 1.00 8197 141 0.2463 0.2806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6434 REMARK 3 ANGLE : 0.883 8743 REMARK 3 CHIRALITY : 0.066 1001 REMARK 3 PLANARITY : 0.005 1111 REMARK 3 DIHEDRAL : 15.780 3909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118720 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS (PH 5.5) CONTAINING REMARK 280 200 MM (NH4)2SO4, 25% (V/V) PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.78700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.90200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.12250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 123.90200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.78700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.12250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 SER A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 ILE A 19 REMARK 465 ASP A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 ARG A 23 REMARK 465 GLU A 24 REMARK 465 LEU A 25 REMARK 465 GLU A 26 REMARK 465 GLN A 27 REMARK 465 HIS A 28 REMARK 465 GLY A 190 REMARK 465 THR A 191 REMARK 465 THR A 192 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 SER B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 ASN B 14 REMARK 465 GLN B 15 REMARK 465 ALA B 16 REMARK 465 ASN B 17 REMARK 465 LEU B 18 REMARK 465 ILE B 19 REMARK 465 ASP B 20 REMARK 465 ASN B 21 REMARK 465 LYS B 22 REMARK 465 ARG B 23 REMARK 465 GLU B 24 REMARK 465 LEU B 25 REMARK 465 GLU B 26 REMARK 465 GLN B 27 REMARK 465 HIS B 28 REMARK 465 ALA B 29 REMARK 465 GLY B 190 REMARK 465 THR B 191 REMARK 465 THR B 192 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 970 O HOH A 1037 1.98 REMARK 500 O HOH A 777 O HOH A 966 1.99 REMARK 500 O HOH B 851 O HOH B 918 2.00 REMARK 500 O HOH A 882 O HOH A 1012 2.04 REMARK 500 O HOH B 871 O HOH B 942 2.05 REMARK 500 O HOH A 925 O HOH A 973 2.05 REMARK 500 O HOH A 982 O HOH A 992 2.06 REMARK 500 O HOH A 641 O HOH A 853 2.07 REMARK 500 O HOH B 616 O HOH B 926 2.08 REMARK 500 O HOH B 610 O HOH B 724 2.08 REMARK 500 O HOH A 803 O HOH A 973 2.08 REMARK 500 O HOH B 876 O HOH B 924 2.10 REMARK 500 O HOH A 631 O HOH A 773 2.10 REMARK 500 OE1 GLN B 46 O HOH B 601 2.11 REMARK 500 O HOH A 867 O HOH A 944 2.11 REMARK 500 O HOH B 918 O HOH B 976 2.11 REMARK 500 O HOH B 856 O HOH B 978 2.12 REMARK 500 O HOH B 870 O HOH B 901 2.12 REMARK 500 O HOH B 976 O HOH B 987 2.13 REMARK 500 O HOH B 697 O HOH B 960 2.16 REMARK 500 O HOH A 953 O HOH A 1028 2.16 REMARK 500 O HOH A 738 O HOH A 982 2.17 REMARK 500 O HOH A 887 O HOH A 939 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 964 O HOH A 969 1455 2.01 REMARK 500 O HOH B 601 O HOH B 644 4535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 -127.81 51.91 REMARK 500 CYS A 326 15.69 -144.71 REMARK 500 LEU A 327 -82.67 68.34 REMARK 500 GLU B 59 -121.66 49.52 REMARK 500 ASP B 87 4.18 58.40 REMARK 500 CYS B 326 14.43 -144.43 REMARK 500 LEU B 327 -78.97 70.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1056 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 6.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Q2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Q2 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 DBREF 5N81 A 13 427 UNP P09095 TYCA_BREPA 3 418 DBREF 5N81 B 13 427 UNP P09095 TYCA_BREPA 3 418 SEQADV 5N81 MET A 1 UNP P09095 INITIATING METHIONINE SEQADV 5N81 HIS A 2 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS A 3 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS A 4 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS A 5 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS A 6 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS A 7 UNP P09095 EXPRESSION TAG SEQADV 5N81 SER A 8 UNP P09095 EXPRESSION TAG SEQADV 5N81 GLY A 9 UNP P09095 EXPRESSION TAG SEQADV 5N81 ARG A 10 UNP P09095 EXPRESSION TAG SEQADV 5N81 SER A 11 UNP P09095 EXPRESSION TAG SEQADV 5N81 VAL A 12 UNP P09095 EXPRESSION TAG SEQADV 5N81 VAL A 234 UNP P09095 ALA 224 CONFLICT SEQADV 5N81 SER A 237 UNP P09095 TRP 227 CONFLICT SEQADV 5N81 A UNP P09095 THR 316 DELETION SEQADV 5N81 CYS A 326 UNP P09095 SER 317 CONFLICT SEQADV 5N81 LEU A 327 UNP P09095 ILE 318 CONFLICT SEQADV 5N81 VAL A 328 UNP P09095 CYS 319 CONFLICT SEQADV 5N81 MET B 1 UNP P09095 INITIATING METHIONINE SEQADV 5N81 HIS B 2 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS B 3 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS B 4 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS B 5 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS B 6 UNP P09095 EXPRESSION TAG SEQADV 5N81 HIS B 7 UNP P09095 EXPRESSION TAG SEQADV 5N81 SER B 8 UNP P09095 EXPRESSION TAG SEQADV 5N81 GLY B 9 UNP P09095 EXPRESSION TAG SEQADV 5N81 ARG B 10 UNP P09095 EXPRESSION TAG SEQADV 5N81 SER B 11 UNP P09095 EXPRESSION TAG SEQADV 5N81 VAL B 12 UNP P09095 EXPRESSION TAG SEQADV 5N81 VAL B 234 UNP P09095 ALA 224 CONFLICT SEQADV 5N81 SER B 237 UNP P09095 TRP 227 CONFLICT SEQADV 5N81 B UNP P09095 THR 316 DELETION SEQADV 5N81 CYS B 326 UNP P09095 SER 317 CONFLICT SEQADV 5N81 LEU B 327 UNP P09095 ILE 318 CONFLICT SEQADV 5N81 VAL B 328 UNP P09095 CYS 319 CONFLICT SEQRES 1 A 427 MET HIS HIS HIS HIS HIS HIS SER GLY ARG SER VAL ALA SEQRES 2 A 427 ASN GLN ALA ASN LEU ILE ASP ASN LYS ARG GLU LEU GLU SEQRES 3 A 427 GLN HIS ALA LEU VAL PRO TYR ALA GLN GLY LYS SER ILE SEQRES 4 A 427 HIS GLN LEU PHE GLU GLU GLN ALA GLU ALA PHE PRO ASP SEQRES 5 A 427 ARG VAL ALA ILE VAL PHE GLU ASN ARG ARG LEU SER TYR SEQRES 6 A 427 GLN GLU LEU ASN ARG LYS ALA ASN GLN LEU ALA ARG ALA SEQRES 7 A 427 LEU LEU GLU LYS GLY VAL GLN THR ASP SER ILE VAL GLY SEQRES 8 A 427 VAL MET MET GLU LYS SER ILE GLU ASN VAL ILE ALA ILE SEQRES 9 A 427 LEU ALA VAL LEU LYS ALA GLY GLY ALA TYR VAL PRO ILE SEQRES 10 A 427 ASP ILE GLU TYR PRO ARG ASP ARG ILE GLN TYR ILE LEU SEQRES 11 A 427 GLN ASP SER GLN THR LYS ILE VAL LEU THR GLN LYS SER SEQRES 12 A 427 VAL SER GLN LEU VAL HIS ASP VAL GLY TYR SER GLY GLU SEQRES 13 A 427 VAL VAL VAL LEU ASP GLU GLU GLN LEU ASP ALA ARG GLU SEQRES 14 A 427 THR ALA ASN LEU HIS GLN PRO SER LYS PRO THR ASP LEU SEQRES 15 A 427 ALA TYR VAL ILE TYR THR SER GLY THR THR GLY LYS PRO SEQRES 16 A 427 LYS GLY THR MET LEU GLU HIS LYS GLY ILE ALA ASN LEU SEQRES 17 A 427 GLN SER PHE PHE GLN ASN SER PHE GLY VAL THR GLU GLN SEQRES 18 A 427 ASP ARG ILE GLY LEU PHE ALA SER MET SER PHE ASP VAL SEQRES 19 A 427 SER VAL SER GLU MET PHE MET ALA LEU LEU SER GLY ALA SEQRES 20 A 427 SER LEU TYR ILE LEU SER LYS GLN THR ILE HIS ASP PHE SEQRES 21 A 427 ALA ALA PHE GLU HIS TYR LEU SER GLU ASN GLU LEU THR SEQRES 22 A 427 ILE ILE THR LEU PRO PRO THR TYR LEU THR HIS LEU THR SEQRES 23 A 427 PRO GLU ARG ILE THR SER LEU ARG ILE MET ILE THR ALA SEQRES 24 A 427 GLY SER ALA SER SER ALA PRO LEU VAL ASN LYS TRP LYS SEQRES 25 A 427 ASP LYS LEU ARG TYR ILE ASN ALA TYR GLY PRO THR GLU SEQRES 26 A 427 CYS LEU VAL ALA THR ILE TRP GLU ALA PRO SER ASN GLN SEQRES 27 A 427 LEU SER VAL GLN SER VAL PRO ILE GLY LYS PRO ILE GLN SEQRES 28 A 427 ASN THR HIS ILE TYR ILE VAL ASN GLU ASP LEU GLN LEU SEQRES 29 A 427 LEU PRO THR GLY SER GLU GLY GLU LEU CYS ILE GLY GLY SEQRES 30 A 427 VAL GLY LEU ALA ARG GLY TYR TRP ASN ARG PRO ASP LEU SEQRES 31 A 427 THR ALA GLU LYS PHE VAL ASP ASN PRO PHE VAL PRO GLY SEQRES 32 A 427 GLU LYS MET TYR ARG THR GLY ASP LEU ALA LYS TRP LEU SEQRES 33 A 427 THR ASP GLY THR ILE GLU PHE LEU GLY ARG ILE SEQRES 1 B 427 MET HIS HIS HIS HIS HIS HIS SER GLY ARG SER VAL ALA SEQRES 2 B 427 ASN GLN ALA ASN LEU ILE ASP ASN LYS ARG GLU LEU GLU SEQRES 3 B 427 GLN HIS ALA LEU VAL PRO TYR ALA GLN GLY LYS SER ILE SEQRES 4 B 427 HIS GLN LEU PHE GLU GLU GLN ALA GLU ALA PHE PRO ASP SEQRES 5 B 427 ARG VAL ALA ILE VAL PHE GLU ASN ARG ARG LEU SER TYR SEQRES 6 B 427 GLN GLU LEU ASN ARG LYS ALA ASN GLN LEU ALA ARG ALA SEQRES 7 B 427 LEU LEU GLU LYS GLY VAL GLN THR ASP SER ILE VAL GLY SEQRES 8 B 427 VAL MET MET GLU LYS SER ILE GLU ASN VAL ILE ALA ILE SEQRES 9 B 427 LEU ALA VAL LEU LYS ALA GLY GLY ALA TYR VAL PRO ILE SEQRES 10 B 427 ASP ILE GLU TYR PRO ARG ASP ARG ILE GLN TYR ILE LEU SEQRES 11 B 427 GLN ASP SER GLN THR LYS ILE VAL LEU THR GLN LYS SER SEQRES 12 B 427 VAL SER GLN LEU VAL HIS ASP VAL GLY TYR SER GLY GLU SEQRES 13 B 427 VAL VAL VAL LEU ASP GLU GLU GLN LEU ASP ALA ARG GLU SEQRES 14 B 427 THR ALA ASN LEU HIS GLN PRO SER LYS PRO THR ASP LEU SEQRES 15 B 427 ALA TYR VAL ILE TYR THR SER GLY THR THR GLY LYS PRO SEQRES 16 B 427 LYS GLY THR MET LEU GLU HIS LYS GLY ILE ALA ASN LEU SEQRES 17 B 427 GLN SER PHE PHE GLN ASN SER PHE GLY VAL THR GLU GLN SEQRES 18 B 427 ASP ARG ILE GLY LEU PHE ALA SER MET SER PHE ASP VAL SEQRES 19 B 427 SER VAL SER GLU MET PHE MET ALA LEU LEU SER GLY ALA SEQRES 20 B 427 SER LEU TYR ILE LEU SER LYS GLN THR ILE HIS ASP PHE SEQRES 21 B 427 ALA ALA PHE GLU HIS TYR LEU SER GLU ASN GLU LEU THR SEQRES 22 B 427 ILE ILE THR LEU PRO PRO THR TYR LEU THR HIS LEU THR SEQRES 23 B 427 PRO GLU ARG ILE THR SER LEU ARG ILE MET ILE THR ALA SEQRES 24 B 427 GLY SER ALA SER SER ALA PRO LEU VAL ASN LYS TRP LYS SEQRES 25 B 427 ASP LYS LEU ARG TYR ILE ASN ALA TYR GLY PRO THR GLU SEQRES 26 B 427 CYS LEU VAL ALA THR ILE TRP GLU ALA PRO SER ASN GLN SEQRES 27 B 427 LEU SER VAL GLN SER VAL PRO ILE GLY LYS PRO ILE GLN SEQRES 28 B 427 ASN THR HIS ILE TYR ILE VAL ASN GLU ASP LEU GLN LEU SEQRES 29 B 427 LEU PRO THR GLY SER GLU GLY GLU LEU CYS ILE GLY GLY SEQRES 30 B 427 VAL GLY LEU ALA ARG GLY TYR TRP ASN ARG PRO ASP LEU SEQRES 31 B 427 THR ALA GLU LYS PHE VAL ASP ASN PRO PHE VAL PRO GLY SEQRES 32 B 427 GLU LYS MET TYR ARG THR GLY ASP LEU ALA LYS TRP LEU SEQRES 33 B 427 THR ASP GLY THR ILE GLU PHE LEU GLY ARG ILE HET 8Q2 A 501 38 HET SO4 A 502 5 HET 8Q2 B 501 38 HET BTB B 502 33 HET SO4 B 503 5 HETNAM 8Q2 [(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 8Q2 BIS(OXIDANYL)OXOLAN-2-YL]METHYL ~{N}-[(3~{S})-3- HETNAM 3 8Q2 AZANYL-3-(4-PROP-2-YNOXYPHENYL)PROPANOYL]SULFAMATE HETNAM SO4 SULFATE ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 3 8Q2 2(C22 H25 N7 O8 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 BTB C8 H19 N O5 FORMUL 8 HOH *848(H2 O) HELIX 1 AA1 SER A 38 PHE A 50 1 13 HELIX 2 AA2 TYR A 65 GLY A 83 1 19 HELIX 3 AA3 SER A 97 GLY A 111 1 15 HELIX 4 AA4 PRO A 122 GLN A 134 1 13 HELIX 5 AA5 GLN A 141 VAL A 151 1 11 HELIX 6 AA6 ASP A 161 GLU A 163 5 3 HELIX 7 AA7 HIS A 202 PHE A 216 1 15 HELIX 8 AA8 ASP A 233 LEU A 244 1 12 HELIX 9 AA9 SER A 253 ASP A 259 1 7 HELIX 10 AB1 ASP A 259 ASN A 270 1 12 HELIX 11 AB2 PRO A 278 THR A 283 1 6 HELIX 12 AB3 HIS A 284 LEU A 285 5 2 HELIX 13 AB4 THR A 286 ILE A 290 5 5 HELIX 14 AB5 SER A 304 LYS A 312 1 9 HELIX 15 AB6 ARG A 387 LYS A 394 1 8 HELIX 16 AB7 SER B 38 PHE B 50 1 13 HELIX 17 AB8 TYR B 65 GLU B 81 1 17 HELIX 18 AB9 SER B 97 ALA B 110 1 14 HELIX 19 AC1 PRO B 122 GLN B 134 1 13 HELIX 20 AC2 GLN B 141 VAL B 151 1 11 HELIX 21 AC3 ASP B 161 GLU B 163 5 3 HELIX 22 AC4 HIS B 202 GLY B 217 1 16 HELIX 23 AC5 ASP B 233 LEU B 244 1 12 HELIX 24 AC6 SER B 253 ASP B 259 1 7 HELIX 25 AC7 ASP B 259 ASN B 270 1 12 HELIX 26 AC8 PRO B 278 THR B 283 1 6 HELIX 27 AC9 HIS B 284 LEU B 285 5 2 HELIX 28 AD1 THR B 286 ILE B 290 5 5 HELIX 29 AD2 SER B 304 LYS B 312 1 9 HELIX 30 AD3 ARG B 387 LYS B 394 1 8 SHEET 1 AA1 4 ARG A 61 SER A 64 0 SHEET 2 AA1 4 VAL A 54 PHE A 58 -1 N ALA A 55 O LEU A 63 SHEET 3 AA1 4 SER A 248 ILE A 251 1 O ILE A 251 N VAL A 57 SHEET 4 AA1 4 ARG A 223 LEU A 226 1 N ILE A 224 O SER A 248 SHEET 1 AA2 4 ALA A 113 PRO A 116 0 SHEET 2 AA2 4 ILE A 89 VAL A 92 1 N VAL A 90 O ALA A 113 SHEET 3 AA2 4 ILE A 137 THR A 140 1 O LEU A 139 N GLY A 91 SHEET 4 AA2 4 GLU A 156 VAL A 159 1 O VAL A 158 N THR A 140 SHEET 1 AA3 3 LEU A 182 THR A 188 0 SHEET 2 AA3 3 LYS A 196 GLU A 201 -1 O LEU A 200 N ALA A 183 SHEET 3 AA3 3 GLY A 383 TYR A 384 -1 O GLY A 383 N MET A 199 SHEET 1 AA4 5 ILE A 274 LEU A 277 0 SHEET 2 AA4 5 ILE A 295 ALA A 299 1 O ILE A 297 N LEU A 277 SHEET 3 AA4 5 ARG A 316 TYR A 321 1 O ILE A 318 N MET A 296 SHEET 4 AA4 5 THR A 330 GLU A 333 -1 O TRP A 332 N ASN A 319 SHEET 5 AA4 5 LYS A 348 PRO A 349 -1 O LYS A 348 N ILE A 331 SHEET 1 AA5 4 THR A 353 VAL A 358 0 SHEET 2 AA5 4 GLY A 371 GLY A 377 -1 O GLY A 376 N HIS A 354 SHEET 3 AA5 4 LYS A 405 TRP A 415 -1 O TYR A 407 N ILE A 375 SHEET 4 AA5 4 PHE A 395 ASP A 397 -1 N VAL A 396 O MET A 406 SHEET 1 AA6 4 THR A 353 VAL A 358 0 SHEET 2 AA6 4 GLY A 371 GLY A 377 -1 O GLY A 376 N HIS A 354 SHEET 3 AA6 4 LYS A 405 TRP A 415 -1 O TYR A 407 N ILE A 375 SHEET 4 AA6 4 ILE A 421 ARG A 426 -1 O LEU A 424 N LEU A 412 SHEET 1 AA7 4 ARG B 61 SER B 64 0 SHEET 2 AA7 4 VAL B 54 PHE B 58 -1 N ALA B 55 O LEU B 63 SHEET 3 AA7 4 SER B 248 ILE B 251 1 O ILE B 251 N VAL B 57 SHEET 4 AA7 4 ARG B 223 LEU B 226 1 N ILE B 224 O SER B 248 SHEET 1 AA8 4 ALA B 113 PRO B 116 0 SHEET 2 AA8 4 ILE B 89 VAL B 92 1 N VAL B 90 O ALA B 113 SHEET 3 AA8 4 ILE B 137 THR B 140 1 O LEU B 139 N GLY B 91 SHEET 4 AA8 4 GLU B 156 VAL B 159 1 O VAL B 158 N THR B 140 SHEET 1 AA9 3 LEU B 182 THR B 188 0 SHEET 2 AA9 3 LYS B 196 GLU B 201 -1 O LEU B 200 N ALA B 183 SHEET 3 AA9 3 GLY B 383 TYR B 384 -1 O GLY B 383 N MET B 199 SHEET 1 AB1 5 ILE B 274 LEU B 277 0 SHEET 2 AB1 5 ILE B 295 ALA B 299 1 O ILE B 297 N LEU B 277 SHEET 3 AB1 5 ARG B 316 TYR B 321 1 O ALA B 320 N THR B 298 SHEET 4 AB1 5 THR B 330 GLU B 333 -1 O TRP B 332 N ASN B 319 SHEET 5 AB1 5 LYS B 348 PRO B 349 -1 O LYS B 348 N ILE B 331 SHEET 1 AB2 4 THR B 353 VAL B 358 0 SHEET 2 AB2 4 GLY B 371 GLY B 377 -1 O GLY B 376 N HIS B 354 SHEET 3 AB2 4 LYS B 405 TRP B 415 -1 O TYR B 407 N ILE B 375 SHEET 4 AB2 4 PHE B 395 ASP B 397 -1 N VAL B 396 O MET B 406 SHEET 1 AB3 4 THR B 353 VAL B 358 0 SHEET 2 AB3 4 GLY B 371 GLY B 377 -1 O GLY B 376 N HIS B 354 SHEET 3 AB3 4 LYS B 405 TRP B 415 -1 O TYR B 407 N ILE B 375 SHEET 4 AB3 4 ILE B 421 ARG B 426 -1 O LEU B 424 N LEU B 412 SITE 1 AC1 24 PHE A 216 PHE A 232 ASP A 233 VAL A 234 SITE 2 AC1 24 SER A 237 ALA A 299 GLY A 300 SER A 301 SITE 3 AC1 24 ALA A 302 ASN A 319 ALA A 320 GLY A 322 SITE 4 AC1 24 PRO A 323 THR A 324 LEU A 327 ASP A 411 SITE 5 AC1 24 PHE A 423 HOH A 645 HOH A 707 HOH A 714 SITE 6 AC1 24 HOH A 758 HOH A 774 HOH A 821 HOH A 883 SITE 1 AC2 7 ARG A 387 PRO A 388 ASP A 389 LEU A 390 SITE 2 AC2 7 HOH A 614 HOH A 741 HOH A 832 SITE 1 AC3 22 PHE B 232 ASP B 233 VAL B 234 SER B 237 SITE 2 AC3 22 ALA B 299 GLY B 300 SER B 301 ALA B 302 SITE 3 AC3 22 ASN B 319 ALA B 320 TYR B 321 GLY B 322 SITE 4 AC3 22 THR B 324 LEU B 327 ASP B 411 PHE B 423 SITE 5 AC3 22 HOH B 659 HOH B 694 HOH B 732 HOH B 745 SITE 6 AC3 22 HOH B 771 HOH B 847 SITE 1 AC4 11 GLN B 46 PHE B 50 GLN B 213 THR B 367 SITE 2 AC4 11 TRP B 415 HOH B 644 HOH B 651 HOH B 656 SITE 3 AC4 11 HOH B 675 HOH B 721 HOH B 815 SITE 1 AC5 4 ARG B 387 PRO B 388 ASP B 389 LEU B 390 CRYST1 59.574 60.245 247.804 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004035 0.00000