HEADER HYDROLASE 23-FEB-17 5N8C TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LPXC COMPLEXED WITH TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 5 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 6 EC: 3.5.1.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LPXC, ENVA, PA4406; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBADSMT KEYWDS INHIBITOR, LPXC, HYROXAMATE, ANTIBACTERIAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.CROSS,M.D.RYAN,J.ZHANG,R.K.CHENG,M.WOOD,O.A.ANDERSEN,M.BROOKS, AUTHOR 2 J.KWONG,J.BARKER REVDAT 3 17-JAN-24 5N8C 1 LINK REVDAT 2 12-APR-17 5N8C 1 JRNL REVDAT 1 29-MAR-17 5N8C 0 JRNL AUTH J.ZHANG,A.CHAN,B.LIPPA,J.B.CROSS,C.LIU,N.YIN,J.A.ROMERO, JRNL AUTH 2 J.LAWRENCE,R.HENEY,P.HERRADURA,J.GOSS,C.CLARK,C.ABEL, JRNL AUTH 3 Y.ZHANG,K.M.POUTSIAKA,F.EPIE,M.CONRAD,A.MAHAMOON,K.NGUYEN, JRNL AUTH 4 A.CHAVAN,E.CLARK,T.C.LI,R.K.CHENG,M.WOOD,O.A.ANDERSEN, JRNL AUTH 5 M.BROOKS,J.KWONG,J.BARKER,I.B.PARR,Y.GU,M.D.RYAN,S.COLEMAN, JRNL AUTH 6 C.A.METCALF JRNL TITL STRUCTURE-BASED DISCOVERY OF LPXC INHIBITORS. JRNL REF BIOORG. MED. CHEM. LETT. V. 27 1670 2017 JRNL REFN ESSN 1464-3405 JRNL PMID 28302397 JRNL DOI 10.1016/J.BMCL.2017.03.006 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 1.40000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5029 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4819 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6845 ; 1.969 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11164 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;32.411 ;23.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 893 ;14.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5643 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1073 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5N8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2VES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 0.1 M IMIDAZOLE, 0.1M REMARK 280 CACL2, 1MM ZNCL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 465 ALA B 300 REMARK 465 ALA B 301 REMARK 465 ALA B 302 REMARK 465 VAL B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 70 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 198 ZN ZN B 402 1556 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 5 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 195 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 195 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 201 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 201 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 103 -127.60 56.40 REMARK 500 MET B 103 -125.85 64.95 REMARK 500 ASP B 159 73.01 -154.53 REMARK 500 ASP B 218 -157.08 -87.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 94.8 REMARK 620 3 ASP A 241 OD1 99.4 100.8 REMARK 620 4 8Q8 A 403 O3 91.9 164.3 92.1 REMARK 620 5 8Q8 A 403 O2 121.9 90.7 136.1 73.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 198 OE1 REMARK 620 2 8Q8 A 403 N4 114.5 REMARK 620 3 GLU B 198 OE2 75.1 43.1 REMARK 620 4 8Q8 B 403 N4 104.8 106.0 135.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 198 OE2 REMARK 620 2 8Q8 A 403 N4 140.2 REMARK 620 3 8Q8 B 403 O1 85.8 56.4 REMARK 620 4 8Q8 B 403 N4 86.7 55.7 1.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 237 NE2 95.5 REMARK 620 3 ASP B 241 OD1 96.9 96.1 REMARK 620 4 8Q8 B 403 O2 123.7 89.1 138.4 REMARK 620 5 8Q8 B 403 O3 96.0 164.4 93.0 75.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Q8 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Q8 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 DBREF 5N8C A 1 303 UNP P47205 LPXC_PSEAE 1 303 DBREF 5N8C B 1 303 UNP P47205 LPXC_PSEAE 1 303 SEQADV 5N8C SER A 0 UNP P47205 EXPRESSION TAG SEQADV 5N8C SER A 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQADV 5N8C SER B 0 UNP P47205 EXPRESSION TAG SEQADV 5N8C SER B 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQRES 1 A 304 SER MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG SEQRES 2 A 304 ALA THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR SEQRES 3 A 304 LEU THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL SEQRES 4 A 304 PHE SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO SEQRES 5 A 304 ALA ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR SEQRES 6 A 304 THR LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU SEQRES 7 A 304 HIS LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 304 ALA TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET SEQRES 9 A 304 ASP GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER SEQRES 10 A 304 ALA GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE SEQRES 11 A 304 ARG ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS SEQRES 12 A 304 ARG ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER SEQRES 13 A 304 PHE GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG SEQRES 14 A 304 THR GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE SEQRES 15 A 304 VAL LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 304 ARG ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU SEQRES 17 A 304 GLY GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN SEQRES 18 A 304 ARG VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU SEQRES 19 A 304 PHE VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 304 TYR LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY SEQRES 21 A 304 PHE LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG SEQRES 22 A 304 THR LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR SEQRES 23 A 304 PHE GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG SEQRES 24 A 304 PRO ALA ALA ALA VAL SEQRES 1 B 304 SER MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG SEQRES 2 B 304 ALA THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR SEQRES 3 B 304 LEU THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL SEQRES 4 B 304 PHE SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO SEQRES 5 B 304 ALA ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR SEQRES 6 B 304 THR LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU SEQRES 7 B 304 HIS LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN SEQRES 8 B 304 ALA TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET SEQRES 9 B 304 ASP GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER SEQRES 10 B 304 ALA GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE SEQRES 11 B 304 ARG ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS SEQRES 12 B 304 ARG ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER SEQRES 13 B 304 PHE GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG SEQRES 14 B 304 THR GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE SEQRES 15 B 304 VAL LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 B 304 ARG ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU SEQRES 17 B 304 GLY GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN SEQRES 18 B 304 ARG VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU SEQRES 19 B 304 PHE VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU SEQRES 20 B 304 TYR LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY SEQRES 21 B 304 PHE LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG SEQRES 22 B 304 THR LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR SEQRES 23 B 304 PHE GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG SEQRES 24 B 304 PRO ALA ALA ALA VAL HET ZN A 401 1 HET ZN A 402 1 HET 8Q8 A 403 35 HET CL A 404 1 HET ZN B 401 1 HET ZN B 402 1 HET 8Q8 B 403 35 HET CL B 404 1 HETNAM ZN ZINC ION HETNAM 8Q8 (2~{S})-3-AZANYL-2-[[(1~{R})-5-[2-[4-[[2- HETNAM 2 8Q8 (HYDROXYMETHYL)IMIDAZOL-1-YL]METHYL]PHENYL]ETHYNYL]-2, HETNAM 3 8Q8 3-DIHYDRO-1~{H}-INDEN-1-YL]AMINO]-3-METHYL-~{N}- HETNAM 4 8Q8 OXIDANYL-BUTANAMIDE HETNAM CL CHLORIDE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 8Q8 2(C27 H31 N5 O3) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *492(H2 O) HELIX 1 AA1 ARG A 53 VAL A 57 5 5 HELIX 2 AA2 VAL A 76 LEU A 86 1 11 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 SER A 180 VAL A 185 1 6 HELIX 5 AA5 MET A 194 GLN A 203 1 10 HELIX 6 AA6 ASP A 232 TYR A 247 1 16 HELIX 7 AA7 LEU A 248 GLY A 250 5 3 HELIX 8 AA8 GLY A 263 ASP A 277 1 15 HELIX 9 AA9 ASP A 288 ALA A 292 5 5 HELIX 10 AB1 ARG B 53 VAL B 57 5 5 HELIX 11 AB2 VAL B 76 LEU B 86 1 11 HELIX 12 AB3 ALA B 107 GLY B 118 1 12 HELIX 13 AB4 SER B 180 VAL B 185 1 6 HELIX 14 AB5 MET B 194 GLN B 203 1 10 HELIX 15 AB6 ASP B 232 TYR B 247 1 16 HELIX 16 AB7 LEU B 248 GLY B 250 5 3 HELIX 17 AB8 GLY B 263 ASP B 277 1 15 HELIX 18 AB9 ASP B 288 ALA B 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 120 N THR A 6 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 PRO A 30 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 2 LEU A 66 LYS A 68 0 SHEET 2 AA3 2 VAL A 71 VAL A 73 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 GLU A 157 1 N SER A 155 O PHE A 257 SHEET 5 AA4 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O GLU A 282 N ARG A 130 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 SHEET 1 AA7 2 LYS B 3 LEU B 7 0 SHEET 2 AA7 2 LEU B 119 ALA B 125 -1 O GLN B 122 N GLN B 4 SHEET 1 AA8 5 ILE B 11 VAL B 16 0 SHEET 2 AA8 5 LYS B 23 PRO B 30 -1 O LEU B 26 N ALA B 13 SHEET 3 AA8 5 ALA B 91 LEU B 95 -1 O GLU B 94 N THR B 27 SHEET 4 AA8 5 ILE B 37 ARG B 41 1 N SER B 40 O LEU B 95 SHEET 5 AA8 5 VAL B 48 PRO B 51 -1 O VAL B 48 N ARG B 41 SHEET 1 AA9 2 LEU B 66 LYS B 68 0 SHEET 2 AA9 2 VAL B 71 VAL B 73 -1 O VAL B 73 N LEU B 66 SHEET 1 AB1 5 VAL B 135 GLU B 139 0 SHEET 2 AB1 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB1 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 AB1 5 PHE B 152 GLU B 157 1 N SER B 155 O PHE B 257 SHEET 5 AB1 5 GLN B 171 ASP B 175 -1 O ALA B 172 N PHE B 156 SHEET 1 AB2 5 VAL B 135 GLU B 139 0 SHEET 2 AB2 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB2 5 SER B 252 PHE B 260 -1 O PHE B 260 N ARG B 143 SHEET 4 AB2 5 PHE B 128 ILE B 131 1 N ILE B 129 O SER B 252 SHEET 5 AB2 5 TRP B 281 VAL B 284 -1 O VAL B 284 N PHE B 128 SHEET 1 AB3 2 PHE B 191 PHE B 193 0 SHEET 2 AB3 2 ILE B 215 VAL B 217 1 O VAL B 217 N GLY B 192 LINK NE2 HIS A 78 ZN ZN A 401 1555 1555 2.07 LINK OE1 GLU A 198 ZN ZN A 402 1555 1555 2.10 LINK OE2 GLU A 198 ZN ZN B 402 1555 1556 2.59 LINK NE2 HIS A 237 ZN ZN A 401 1555 1555 2.11 LINK OD1 ASP A 241 ZN ZN A 401 1555 1555 2.00 LINK ZN ZN A 401 O3 8Q8 A 403 1555 1555 2.14 LINK ZN ZN A 401 O2 8Q8 A 403 1555 1555 2.02 LINK ZN ZN A 402 N4 8Q8 A 403 1555 1555 2.02 LINK ZN ZN A 402 OE2 GLU B 198 1554 1555 1.85 LINK ZN ZN A 402 N4 8Q8 B 403 1555 1556 2.31 LINK N4 8Q8 A 403 ZN ZN B 402 1555 1556 2.42 LINK NE2 HIS B 78 ZN ZN B 401 1555 1555 2.06 LINK NE2 HIS B 237 ZN ZN B 401 1555 1555 2.10 LINK OD1 ASP B 241 ZN ZN B 401 1555 1555 2.05 LINK ZN ZN B 401 O2 8Q8 B 403 1555 1555 2.05 LINK ZN ZN B 401 O3 8Q8 B 403 1555 1555 2.18 LINK ZN ZN B 402 O1 8Q8 B 403 1555 1555 2.07 LINK ZN ZN B 402 N4 8Q8 B 403 1555 1555 2.08 CISPEP 1 ASP A 45 PRO A 46 0 0.89 CISPEP 2 ASP B 45 PRO B 46 0 -0.97 SITE 1 AC1 4 HIS A 78 HIS A 237 ASP A 241 8Q8 A 403 SITE 1 AC2 5 GLU A 198 8Q8 A 403 GLU B 198 ZN B 402 SITE 2 AC2 5 8Q8 B 403 SITE 1 AC3 24 LEU A 18 HIS A 19 MET A 62 GLU A 77 SITE 2 AC3 24 HIS A 78 THR A 190 PHE A 191 MET A 194 SITE 3 AC3 24 ILE A 197 GLU A 198 ARG A 201 ALA A 206 SITE 4 AC3 24 GLY A 209 SER A 210 HIS A 237 ASP A 241 SITE 5 AC3 24 HIS A 264 ZN A 401 ZN A 402 HOH A 592 SITE 6 AC3 24 HOH A 596 GLU B 198 ZN B 402 8Q8 B 403 SITE 1 AC4 2 GLY A 263 LEU A 266 SITE 1 AC5 4 HIS B 78 HIS B 237 ASP B 241 8Q8 B 403 SITE 1 AC6 5 GLU A 198 ZN A 402 8Q8 A 403 GLU B 198 SITE 2 AC6 5 8Q8 B 403 SITE 1 AC7 22 GLU A 198 ZN A 402 8Q8 A 403 HIS B 19 SITE 2 AC7 22 MET B 62 GLU B 77 HIS B 78 THR B 190 SITE 3 AC7 22 PHE B 191 MET B 194 ILE B 197 GLU B 198 SITE 4 AC7 22 ARG B 201 GLY B 209 SER B 210 HIS B 237 SITE 5 AC7 22 ASP B 241 HIS B 264 ZN B 401 ZN B 402 SITE 6 AC7 22 HOH B 539 HOH B 560 SITE 1 AC8 3 GLY B 263 LEU B 266 HOH B 708 CRYST1 35.440 95.310 89.720 90.00 96.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028217 0.000000 0.003135 0.00000 SCALE2 0.000000 0.010492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011214 0.00000