HEADER LYASE 24-FEB-17 5N8Q TITLE STRUCTURE OF TRUNCATED NORCOCLAURINE SYNTHASE FROM THALICTRUM FLAVUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-NORCOCLAURINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THALICTRUM FLAVUM SUBSP. GLAUCUM; SOURCE 3 ORGANISM_COMMON: YELLOW MEADOW RUE; SOURCE 4 ORGANISM_TAXID: 150095; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PD451 - SR KEYWDS PICTET SPENGLER CONDENSATION, DOPAMINE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SULA,B.R.LICHMAN,T.PESNOT,J.M.WARD,H.C.HAILES,N.H.KEEP REVDAT 3 17-JAN-24 5N8Q 1 REMARK REVDAT 2 18-OCT-17 5N8Q 1 JRNL REVDAT 1 27-SEP-17 5N8Q 0 JRNL AUTH B.R.LICHMAN,A.SULA,T.PESNOT,H.C.HAILES,J.M.WARD,N.H.KEEP JRNL TITL STRUCTURAL EVIDENCE FOR THE DOPAMINE-FIRST MECHANISM OF JRNL TITL 2 NORCOCLAURINE SYNTHASE. JRNL REF BIOCHEMISTRY V. 56 5274 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28915025 JRNL DOI 10.1021/ACS.BIOCHEM.7B00769 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 37264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3810 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3600 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5191 ; 2.078 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8378 ; 1.058 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.049 ;25.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;13.754 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 2.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 1.662 ; 1.752 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1906 ; 1.652 ; 1.751 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2379 ; 2.643 ; 2.611 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2380 ; 2.644 ; 2.613 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 2.058 ; 1.998 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1904 ; 2.057 ; 1.999 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2812 ; 3.238 ; 2.905 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4293 ; 6.824 ;22.942 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4163 ; 6.686 ;21.783 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 194 B 38 194 9488 0.08 0.05 REMARK 3 2 A 38 194 C 38 194 9408 0.10 0.05 REMARK 3 3 B 38 194 C 38 194 9430 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5970 -11.4870 19.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.1096 REMARK 3 T33: 0.0674 T12: -0.0395 REMARK 3 T13: -0.0340 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.7311 L22: 1.7522 REMARK 3 L33: 2.4392 L12: 0.1094 REMARK 3 L13: 1.9378 L23: 0.7924 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: -0.0117 S13: 0.0682 REMARK 3 S21: -0.1056 S22: -0.2489 S23: 0.0971 REMARK 3 S31: 0.0474 S32: -0.0858 S33: 0.1346 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9190 6.2150 48.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.0982 REMARK 3 T33: 0.0029 T12: -0.0390 REMARK 3 T13: -0.0228 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3918 L22: 2.0373 REMARK 3 L33: 2.6799 L12: 0.1179 REMARK 3 L13: 0.8822 L23: -0.9003 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.0194 S13: -0.0210 REMARK 3 S21: 0.3150 S22: 0.0691 S23: -0.0166 REMARK 3 S31: -0.2033 S32: -0.0303 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 38 C 196 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1830 23.2210 14.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.0847 REMARK 3 T33: 0.0861 T12: -0.0209 REMARK 3 T13: -0.0108 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1021 L22: 1.2454 REMARK 3 L33: 2.7914 L12: -0.1911 REMARK 3 L13: -0.3366 L23: -0.0296 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.0025 S13: -0.0390 REMARK 3 S21: -0.0320 S22: -0.0898 S23: -0.0968 REMARK 3 S31: -0.3254 S32: 0.0404 S33: 0.0432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.0-0-G66AC5D4 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39359 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 109.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VQ5 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V POLYETHYLENE GLYCOL 1000, 10% REMARK 280 W/V POLYETHYLENE GLYCOL 8000 20 MM TRIS, 50 MM NACL, PH 7.5, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.81600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.36950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.81600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.36950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 325 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ILE A 35 REMARK 465 SER A 196 REMARK 465 SER B 32 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 ILE B 35 REMARK 465 ILE B 36 REMARK 465 ASN B 37 REMARK 465 SER B 196 REMARK 465 SER C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 ILE C 35 REMARK 465 ILE C 36 REMARK 465 ASN C 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 SER C 196 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 223 O HOH B 271 2.08 REMARK 500 O HOH C 240 O HOH C 272 2.19 REMARK 500 OE1 GLU B 107 O HOH B 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 116 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 88 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 120 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 MET B 183 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP C 88 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG C 120 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LYS C 123 CD - CE - NZ ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 48.99 -84.78 REMARK 500 GLU B 103 135.81 -175.69 REMARK 500 LEU C 76 72.85 -119.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 5N8Q A 34 196 UNP Q67A25 NCS_THLFG 34 196 DBREF 5N8Q B 34 196 UNP Q67A25 NCS_THLFG 34 196 DBREF 5N8Q C 34 196 UNP Q67A25 NCS_THLFG 34 196 SEQADV 5N8Q SER A 32 UNP Q67A25 EXPRESSION TAG SEQADV 5N8Q MET A 33 UNP Q67A25 EXPRESSION TAG SEQADV 5N8Q SER B 32 UNP Q67A25 EXPRESSION TAG SEQADV 5N8Q MET B 33 UNP Q67A25 EXPRESSION TAG SEQADV 5N8Q SER C 32 UNP Q67A25 EXPRESSION TAG SEQADV 5N8Q MET C 33 UNP Q67A25 EXPRESSION TAG SEQRES 1 A 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 A 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 A 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 A 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 A 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 A 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 A 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 A 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 A 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 A 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 A 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 A 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 A 165 SER LYS LEU VAL LEU GLU HIS LYS SER SEQRES 1 B 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 B 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 B 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 B 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 B 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 B 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 B 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 B 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 B 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 B 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 B 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 B 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 B 165 SER LYS LEU VAL LEU GLU HIS LYS SER SEQRES 1 C 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 C 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 C 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 C 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 C 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 C 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 C 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 C 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 C 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 C 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 C 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 C 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 C 165 SER LYS LEU VAL LEU GLU HIS LYS SER FORMUL 4 HOH *432(H2 O) HELIX 1 AA1 SER A 55 TRP A 65 1 11 HELIX 2 AA2 PRO A 66 ALA A 69 5 4 HELIX 3 AA3 HIS A 71 LEU A 76 1 6 HELIX 4 AA4 TYR A 131 LEU A 134 5 4 HELIX 5 AA5 PHE A 167 GLU A 172 1 6 HELIX 6 AA6 THR A 177 GLU A 193 1 17 HELIX 7 AA7 SER B 55 SER B 64 1 10 HELIX 8 AA8 TRP B 65 ALA B 69 5 5 HELIX 9 AA9 HIS B 71 LEU B 76 1 6 HELIX 10 AB1 TYR B 131 LEU B 134 5 4 HELIX 11 AB2 PHE B 167 GLU B 172 1 6 HELIX 12 AB3 PRO B 173 ILE B 175 5 3 HELIX 13 AB4 THR B 177 GLU B 193 1 17 HELIX 14 AB5 SER C 55 TRP C 65 1 11 HELIX 15 AB6 PRO C 66 LYS C 70 5 5 HELIX 16 AB7 HIS C 71 LEU C 76 1 6 HELIX 17 AB8 TYR C 131 LEU C 134 5 4 HELIX 18 AB9 PHE C 167 GLU C 172 1 6 HELIX 19 AC1 THR C 177 HIS C 194 1 18 SHEET 1 AA1 7 VAL A 42 VAL A 52 0 SHEET 2 AA1 7 SER A 152 VAL A 163 -1 O SER A 157 N HIS A 48 SHEET 3 AA1 7 VAL A 136 GLY A 149 -1 N HIS A 144 O LYS A 156 SHEET 4 AA1 7 LEU A 121 GLY A 129 -1 N VAL A 124 O ASP A 141 SHEET 5 AA1 7 GLU A 107 ASP A 116 -1 N ASP A 116 O LEU A 121 SHEET 6 AA1 7 ILE A 94 PHE A 99 -1 N LEU A 95 O GLU A 110 SHEET 7 AA1 7 PHE A 80 ILE A 86 -1 N ILE A 86 O ILE A 94 SHEET 1 AA2 7 VAL B 42 VAL B 52 0 SHEET 2 AA2 7 SER B 152 VAL B 163 -1 O VAL B 163 N VAL B 42 SHEET 3 AA2 7 VAL B 136 GLY B 149 -1 N HIS B 144 O LYS B 156 SHEET 4 AA2 7 LEU B 121 GLY B 129 -1 N VAL B 124 O ASP B 141 SHEET 5 AA2 7 GLU B 107 ASP B 116 -1 N ASP B 116 O LEU B 121 SHEET 6 AA2 7 ILE B 94 THR B 98 -1 N LEU B 95 O GLU B 110 SHEET 7 AA2 7 LYS B 82 ILE B 86 -1 N ILE B 86 O ILE B 94 SHEET 1 AA3 7 VAL C 42 VAL C 52 0 SHEET 2 AA3 7 SER C 152 VAL C 163 -1 O SER C 157 N HIS C 48 SHEET 3 AA3 7 VAL C 136 GLY C 149 -1 N HIS C 144 O LYS C 156 SHEET 4 AA3 7 LEU C 121 GLY C 129 -1 N VAL C 124 O ASP C 141 SHEET 5 AA3 7 GLU C 107 ASP C 116 -1 N ASP C 116 O LEU C 121 SHEET 6 AA3 7 ILE C 94 PHE C 99 -1 N LEU C 95 O GLU C 110 SHEET 7 AA3 7 PHE C 80 ILE C 86 -1 N ILE C 86 O ILE C 94 CISPEP 1 PHE A 104 PRO A 105 0 2.37 CISPEP 2 PHE B 104 PRO B 105 0 -0.75 CISPEP 3 PHE C 104 PRO C 105 0 0.65 CRYST1 38.046 109.632 136.739 90.00 90.00 90.00 P 2 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007313 0.00000