HEADER BIOTIN BINDING PROTEIN 24-FEB-17 5N8W TITLE CRYSTAL STRUCTURE OF STREPTAVIDIN WITH D-AMINO ACID CONTAINING PEPTIDE TITLE 2 GGWHDEATWKPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLY-GLY-DTR-DHI-DAS-DGL-DAL-DTH-DTR-DLY; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS STREPTAVIDIN, BIOTIN BINDING, D-AMINO ACIDS, STREPTAVIDIN PEPTIDE KEYWDS 2 COMPLEX, STREPTAVIDIN PEPTIDE 11101 COMPLEX, BIOTIN BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.LYAMICHEV,L.GOODRICH,E.SULLIVAN,R.BANNEN,J.BENZ,T.ALBERT,J.PATEL REVDAT 1 04-OCT-17 5N8W 0 JRNL AUTH V.I.LYAMICHEV,L.E.GOODRICH,E.H.SULLIVAN,R.M.BANNEN,J.BENZ, JRNL AUTH 2 T.J.ALBERT,J.J.PATEL JRNL TITL STEPWISE EVOLUTION IMPROVES IDENTIFICATION OF DIVERSE JRNL TITL 2 PEPTIDES BINDING TO A PROTEIN TARGET. JRNL REF SCI REP V. 7 12116 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28935886 JRNL DOI 10.1038/S41598-017-12440-1 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 122566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 476 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2151 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1848 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2963 ; 1.403 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4294 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 7.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;26.825 ;23.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;10.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.931 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 495 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 0.484 ; 0.658 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1083 ; 0.481 ; 0.657 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1356 ; 0.687 ; 0.986 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1357 ; 0.687 ; 0.987 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 0.499 ; 0.722 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1068 ; 0.499 ; 0.722 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1592 ; 0.604 ; 1.046 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2556 ; 2.033 ; 9.579 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2556 ; 2.032 ; 9.576 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3999 ; 1.057 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 287 ;17.315 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4063 ; 3.643 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6142 26.8124 29.6079 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0088 REMARK 3 T33: 0.0246 T12: -0.0018 REMARK 3 T13: 0.0041 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4265 L22: 0.4768 REMARK 3 L33: 0.6841 L12: 0.0240 REMARK 3 L13: -0.0260 L23: 0.0480 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: -0.0505 S13: 0.0228 REMARK 3 S21: 0.0652 S22: -0.0156 S23: 0.0282 REMARK 3 S31: -0.0073 S32: -0.0331 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4882 21.0320 13.4816 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0088 REMARK 3 T33: 0.0259 T12: -0.0006 REMARK 3 T13: -0.0075 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4055 L22: 0.4817 REMARK 3 L33: 0.6657 L12: 0.0578 REMARK 3 L13: 0.0552 L23: 0.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.0442 S13: -0.0149 REMARK 3 S21: -0.0676 S22: -0.0092 S23: 0.0382 REMARK 3 S31: 0.0262 S32: -0.0371 S33: 0.0067 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3587 8.3033 13.9723 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0051 REMARK 3 T33: 0.0545 T12: -0.0004 REMARK 3 T13: 0.0014 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.0094 L22: 1.9007 REMARK 3 L33: 2.1790 L12: 0.7658 REMARK 3 L13: -0.4933 L23: -0.9188 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.0799 S13: -0.2022 REMARK 3 S21: -0.0872 S22: -0.0136 S23: -0.0723 REMARK 3 S31: 0.2428 S32: 0.0139 S33: 0.0620 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 12 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0592 40.6439 27.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0024 REMARK 3 T33: 0.0556 T12: -0.0000 REMARK 3 T13: -0.0016 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.1295 L22: 2.6195 REMARK 3 L33: 1.6304 L12: -0.3715 REMARK 3 L13: 0.3086 L23: -1.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0396 S13: 0.1649 REMARK 3 S21: 0.0662 S22: -0.0330 S23: -0.0364 REMARK 3 S31: -0.1871 S32: 0.0098 S33: 0.0521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 62.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.29 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM ACETATE 0.1M MOPS PH REMARK 280 7.5 12% PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.02950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.02950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.94100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.94100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.02950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.94100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.02950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.94100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.88200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.02950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ARG A -22 REMARK 465 LYS A -21 REMARK 465 ILE A -20 REMARK 465 VAL A -19 REMARK 465 VAL A -18 REMARK 465 ALA A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 SER A -12 REMARK 465 LEU A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 VAL A -8 REMARK 465 SER A -7 REMARK 465 ILE A -6 REMARK 465 THR A -5 REMARK 465 ALA A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 ILE A 140 REMARK 465 ASP A 141 REMARK 465 ALA A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 LYS A 145 REMARK 465 ALA A 146 REMARK 465 GLY A 147 REMARK 465 VAL A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 152 REMARK 465 PRO A 153 REMARK 465 LEU A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 156 REMARK 465 VAL A 157 REMARK 465 GLN A 158 REMARK 465 GLN A 159 REMARK 465 MET B -23 REMARK 465 ARG B -22 REMARK 465 LYS B -21 REMARK 465 ILE B -20 REMARK 465 VAL B -19 REMARK 465 VAL B -18 REMARK 465 ALA B -17 REMARK 465 ALA B -16 REMARK 465 ILE B -15 REMARK 465 ALA B -14 REMARK 465 VAL B -13 REMARK 465 SER B -12 REMARK 465 LEU B -11 REMARK 465 THR B -10 REMARK 465 THR B -9 REMARK 465 VAL B -8 REMARK 465 SER B -7 REMARK 465 ILE B -6 REMARK 465 THR B -5 REMARK 465 ALA B -4 REMARK 465 SER B -3 REMARK 465 ALA B -2 REMARK 465 SER B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 ALA B 8 REMARK 465 GLN B 9 REMARK 465 VAL B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 465 ILE B 140 REMARK 465 ASP B 141 REMARK 465 ALA B 142 REMARK 465 ALA B 143 REMARK 465 LYS B 144 REMARK 465 LYS B 145 REMARK 465 ALA B 146 REMARK 465 GLY B 147 REMARK 465 VAL B 148 REMARK 465 ASN B 149 REMARK 465 ASN B 150 REMARK 465 GLY B 151 REMARK 465 ASN B 152 REMARK 465 PRO B 153 REMARK 465 LEU B 154 REMARK 465 ASP B 155 REMARK 465 ALA B 156 REMARK 465 VAL B 157 REMARK 465 GLN B 158 REMARK 465 GLN B 159 REMARK 465 DPR C 11 REMARK 465 GLY C 12 REMARK 465 LEU C 13 REMARK 465 TYR C 14 REMARK 465 LEU D 13 REMARK 465 TYR D 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 370 O HOH B 370 3655 1.85 REMARK 500 O HOH A 389 O HOH A 389 3655 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 101 55.91 -111.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 393 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 394 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 395 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 396 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B 394 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 395 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B 396 DISTANCE = 9.15 ANGSTROMS DBREF 5N8W A -23 159 UNP P22629 SAV_STRAV 1 183 DBREF 5N8W B -23 159 UNP P22629 SAV_STRAV 1 183 DBREF 5N8W C 1 14 PDB 5N8W 5N8W 1 14 DBREF 5N8W D 1 14 PDB 5N8W 5N8W 1 14 SEQRES 1 A 183 MET ARG LYS ILE VAL VAL ALA ALA ILE ALA VAL SER LEU SEQRES 2 A 183 THR THR VAL SER ILE THR ALA SER ALA SER ALA ASP PRO SEQRES 3 A 183 SER LYS ASP SER LYS ALA GLN VAL SER ALA ALA GLU ALA SEQRES 4 A 183 GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SER THR SEQRES 5 A 183 PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR GLY SEQRES 6 A 183 THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER ARG TYR SEQRES 7 A 183 VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR ASP SEQRES 8 A 183 GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP LYS SEQRES 9 A 183 ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SER SEQRES 10 A 183 GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN THR SEQRES 11 A 183 GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN ALA SEQRES 12 A 183 TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR LYS SEQRES 13 A 183 VAL LYS PRO SER ALA ALA SER ILE ASP ALA ALA LYS LYS SEQRES 14 A 183 ALA GLY VAL ASN ASN GLY ASN PRO LEU ASP ALA VAL GLN SEQRES 15 A 183 GLN SEQRES 1 B 183 MET ARG LYS ILE VAL VAL ALA ALA ILE ALA VAL SER LEU SEQRES 2 B 183 THR THR VAL SER ILE THR ALA SER ALA SER ALA ASP PRO SEQRES 3 B 183 SER LYS ASP SER LYS ALA GLN VAL SER ALA ALA GLU ALA SEQRES 4 B 183 GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SER THR SEQRES 5 B 183 PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR GLY SEQRES 6 B 183 THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER ARG TYR SEQRES 7 B 183 VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR ASP SEQRES 8 B 183 GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP LYS SEQRES 9 B 183 ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SER SEQRES 10 B 183 GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN THR SEQRES 11 B 183 GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN ALA SEQRES 12 B 183 TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR LYS SEQRES 13 B 183 VAL LYS PRO SER ALA ALA SER ILE ASP ALA ALA LYS LYS SEQRES 14 B 183 ALA GLY VAL ASN ASN GLY ASN PRO LEU ASP ALA VAL GLN SEQRES 15 B 183 GLN SEQRES 1 C 14 GLY GLY DTR DHI DAS DGL DAL DTH DTR DLY DPR GLY LEU SEQRES 2 C 14 TYR SEQRES 1 D 14 GLY GLY DTR DHI DAS DGL DAL DTH DTR DLY DPR GLY LEU SEQRES 2 D 14 TYR HET DTR C 3 14 HET DHI C 4 10 HET DAS C 5 8 HET DGL C 6 9 HET DAL C 7 5 HET DTH C 8 7 HET DTR C 9 14 HET DLY C 10 9 HET DTR D 3 14 HET DHI D 4 10 HET DAS D 5 8 HET DGL D 6 9 HET DAL D 7 5 HET DTH D 8 7 HET DTR D 9 14 HET DLY D 10 9 HET DPR D 11 7 HETNAM DTR D-TRYPTOPHAN HETNAM DHI D-HISTIDINE HETNAM DAS D-ASPARTIC ACID HETNAM DGL D-GLUTAMIC ACID HETNAM DAL D-ALANINE HETNAM DTH D-THREONINE HETNAM DLY D-LYSINE HETNAM DPR D-PROLINE FORMUL 3 DTR 4(C11 H12 N2 O2) FORMUL 3 DHI 2(C6 H10 N3 O2 1+) FORMUL 3 DAS 2(C4 H7 N O4) FORMUL 3 DGL 2(C5 H9 N O4) FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 3 DTH 2(C4 H9 N O3) FORMUL 3 DLY 2(C6 H14 N2 O2) FORMUL 4 DPR C5 H9 N O2 FORMUL 5 HOH *413(H2 O) HELIX 1 AA1 ASN A 49 ARG A 53 5 5 HELIX 2 AA2 THR A 115 LYS A 121 5 7 HELIX 3 AA3 ASN B 49 ARG B 53 5 5 HELIX 4 AA4 THR B 115 LYS B 121 5 7 HELIX 5 AA5 GLY C 2 DTH C 8 1 7 HELIX 6 AA6 GLY D 2 DTH D 8 1 7 SHEET 1 AA1 9 GLY A 19 TYR A 22 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O THR A 40 N THR A 32 SHEET 4 AA1 9 TYR A 54 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O ALA A 86 N TRP A 79 SHEET 7 AA1 9 ARG A 103 SER A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 123 THR A 131 -1 O PHE A 130 N ILE A 104 SHEET 9 AA1 9 GLY A 19 TYR A 22 -1 N TYR A 22 O THR A 131 SHEET 1 AA2 9 GLY B 19 TYR B 22 0 SHEET 2 AA2 9 THR B 28 ALA B 33 -1 O PHE B 29 N TRP B 21 SHEET 3 AA2 9 ALA B 38 GLU B 44 -1 O THR B 42 N ILE B 30 SHEET 4 AA2 9 TYR B 54 TYR B 60 -1 O GLY B 58 N LEU B 39 SHEET 5 AA2 9 THR B 71 LYS B 80 -1 O THR B 76 N THR B 57 SHEET 6 AA2 9 ASN B 85 VAL B 97 -1 O ALA B 86 N TRP B 79 SHEET 7 AA2 9 ARG B 103 SER B 112 -1 O GLN B 107 N SER B 93 SHEET 8 AA2 9 THR B 123 THR B 131 -1 O PHE B 130 N ILE B 104 SHEET 9 AA2 9 GLY B 19 TYR B 22 -1 N TYR B 22 O THR B 131 LINK C GLY C 2 N DTR C 3 1555 1555 1.33 LINK C DTR C 3 N DHI C 4 1555 1555 1.33 LINK C DHI C 4 N DAS C 5 1555 1555 1.33 LINK C DAS C 5 N DGL C 6 1555 1555 1.33 LINK C DGL C 6 N DAL C 7 1555 1555 1.34 LINK C DAL C 7 N DTH C 8 1555 1555 1.33 LINK C DTH C 8 N DTR C 9 1555 1555 1.34 LINK C DTR C 9 N DLY C 10 1555 1555 1.33 LINK C GLY D 2 N DTR D 3 1555 1555 1.32 LINK C DTR D 3 N DHI D 4 1555 1555 1.33 LINK C DHI D 4 N DAS D 5 1555 1555 1.34 LINK C DAS D 5 N DGL D 6 1555 1555 1.33 LINK C DGL D 6 N DAL D 7 1555 1555 1.33 LINK C DAL D 7 N DTH D 8 1555 1555 1.34 LINK C DTH D 8 N DTR D 9 1555 1555 1.33 LINK C DTR D 9 N DLY D 10 1555 1555 1.33 LINK C DLY D 10 N DPR D 11 1555 1555 1.33 LINK C DPR D 11 N GLY D 12 1555 1555 1.33 CRYST1 81.882 95.720 82.059 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012186 0.00000