HEADER PROTEIN BINDING 26-FEB-17 5N9P TITLE ENAH EVH1 IN COMPLEX WITH AC-[2-CL-F]-PP-[PROM-1]-NH2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ENABLED HOMOLOG; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: ENAH EVH1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ONLY THE BACKBONE OF S2B WAS MODELLED AS SIDE CHAIN COMPND 7 WAS NOT VISIBLE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AC-[2-CL-F]-PP-[PROM-1]-NH2; COMPND 10 CHAIN: C, D, E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENAH, MENA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS PROLINE-RICH MOTIF, ENA/VASP INHIBITOR, ACTIN, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.BARONE,Y.ROSKE REVDAT 5 31-JAN-24 5N9P 1 REMARK REVDAT 4 15-NOV-23 5N9P 1 LINK ATOM REVDAT 3 26-OCT-22 5N9P 1 JRNL REVDAT 2 25-NOV-20 5N9P 1 JRNL REVDAT 1 14-JUN-17 5N9P 0 JRNL AUTH M.BARONE,M.MULLER,S.CHIHA,J.REN,D.ALBAT,A.SOICKE,S.DOHMEN, JRNL AUTH 2 M.KLEIN,J.BRUNS,M.VAN DINTHER,R.OPITZ,P.LINDEMANN, JRNL AUTH 3 M.BEERBAUM,K.MOTZNY,Y.ROSKE,P.SCHMIEDER,R.VOLKMER,M.NAZARE, JRNL AUTH 4 U.HEINEMANN,H.OSCHKINAT,P.TEN DIJKE,H.G.SCHMALZ,R.KUHNE JRNL TITL DESIGNED NANOMOLAR SMALL-MOLECULE INHIBITORS OF ENA/VASP JRNL TITL 2 EVH1 INTERACTION IMPAIR INVASION AND EXTRAVASATION OF BREAST JRNL TITL 3 CANCER CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 29684 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33184177 JRNL DOI 10.1073/PNAS.2007213117 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1337 - 3.7428 0.98 2842 149 0.1796 0.1901 REMARK 3 2 3.7428 - 2.9711 0.99 2707 143 0.2063 0.2178 REMARK 3 3 2.9711 - 2.5956 1.00 2687 141 0.2143 0.2641 REMARK 3 4 2.5956 - 2.3583 1.00 2658 140 0.2062 0.2625 REMARK 3 5 2.3583 - 2.1893 1.00 2656 140 0.1878 0.2291 REMARK 3 6 2.1893 - 2.0602 1.00 2621 138 0.2098 0.2441 REMARK 3 7 2.0602 - 1.9570 1.00 2650 139 0.2233 0.2592 REMARK 3 8 1.9570 - 1.8718 1.00 2622 138 0.2453 0.2506 REMARK 3 9 1.8718 - 1.7998 1.00 2627 138 0.2891 0.3008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1969 REMARK 3 ANGLE : 1.273 2687 REMARK 3 CHIRALITY : 0.061 279 REMARK 3 PLANARITY : 0.007 350 REMARK 3 DIHEDRAL : 11.220 1361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 111) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4434 52.3838 230.7101 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.2316 REMARK 3 T33: 0.2211 T12: -0.0058 REMARK 3 T13: 0.0227 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.9099 L22: 1.8523 REMARK 3 L33: 1.0171 L12: 0.0838 REMARK 3 L13: 0.6218 L23: 0.2869 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.2165 S13: 0.0299 REMARK 3 S21: -0.0602 S22: -0.0150 S23: -0.0608 REMARK 3 S31: 0.0073 S32: 0.0184 S33: 0.0031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 5 THROUGH 111) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6403 42.0842 209.8142 REMARK 3 T TENSOR REMARK 3 T11: 0.9199 T22: 0.3530 REMARK 3 T33: 0.4455 T12: -0.0214 REMARK 3 T13: -0.2253 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.5846 L22: 1.3652 REMARK 3 L33: 1.1134 L12: -0.4093 REMARK 3 L13: 0.4446 L23: -0.4592 REMARK 3 S TENSOR REMARK 3 S11: 0.6513 S12: 0.1456 S13: -0.5982 REMARK 3 S21: -0.3942 S22: -0.0524 S23: -0.2360 REMARK 3 S31: 1.4510 S32: -0.0701 S33: 0.3653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 500MM LITHIUM REMARK 280 CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.57400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.14800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.14800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.57400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 336 O HOH B 336 6767 1.30 REMARK 500 O HOH A 310 O HOH A 310 4467 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO D 4 CA PRO D 4 C -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 92B C 5 CA - C - N ANGL. DEV. = 21.8 DEGREES REMARK 500 92B D 5 CA - C - N ANGL. DEV. = -46.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 61 80.66 -158.58 REMARK 500 ASN B 61 85.73 -158.58 REMARK 500 ASN A 61 86.60 -156.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ACE C 1 and 2L5 C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2L5 C 2 and PRO C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 4 and 92B C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 92B C 5 and NH2 C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ACE D 1 and 2L5 D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2L5 D 2 and PRO D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO D 4 and 92B D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 92B D 5 and NH2 D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ACE E 1 and 2L5 E 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2L5 E 2 and PRO E 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO E 4 and 92B E 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 92B E 5 and NH2 E 6 DBREF 5N9P B 1 111 UNP Q8N8S7 ENAH_HUMAN 1 111 DBREF 5N9P A 1 111 UNP Q8N8S7 ENAH_HUMAN 1 111 DBREF 5N9P C 1 6 PDB 5N9P 5N9P 1 6 DBREF 5N9P D 1 6 PDB 5N9P 5N9P 1 6 DBREF 5N9P E 1 6 PDB 5N9P 5N9P 1 6 SEQADV 5N9P GLY B -1 UNP Q8N8S7 EXPRESSION TAG SEQADV 5N9P SER B 0 UNP Q8N8S7 EXPRESSION TAG SEQADV 5N9P GLY A -1 UNP Q8N8S7 EXPRESSION TAG SEQADV 5N9P SER A 0 UNP Q8N8S7 EXPRESSION TAG SEQRES 1 B 113 GLY SER MET SER GLU GLN SER ILE CYS GLN ALA ARG ALA SEQRES 2 B 113 ALA VAL MET VAL TYR ASP ASP ALA ASN LYS LYS TRP VAL SEQRES 3 B 113 PRO ALA GLY GLY SER THR GLY PHE SER ARG VAL HIS ILE SEQRES 4 B 113 TYR HIS HIS THR GLY ASN ASN THR PHE ARG VAL VAL GLY SEQRES 5 B 113 ARG LYS ILE GLN ASP HIS GLN VAL VAL ILE ASN CYS ALA SEQRES 6 B 113 ILE PRO LYS GLY LEU LYS TYR ASN GLN ALA THR GLN THR SEQRES 7 B 113 PHE HIS GLN TRP ARG ASP ALA ARG GLN VAL TYR GLY LEU SEQRES 8 B 113 ASN PHE GLY SER LYS GLU ASP ALA ASN VAL PHE ALA SER SEQRES 9 B 113 ALA MET MET HIS ALA LEU GLU VAL LEU SEQRES 1 A 113 GLY SER MET SER GLU GLN SER ILE CYS GLN ALA ARG ALA SEQRES 2 A 113 ALA VAL MET VAL TYR ASP ASP ALA ASN LYS LYS TRP VAL SEQRES 3 A 113 PRO ALA GLY GLY SER THR GLY PHE SER ARG VAL HIS ILE SEQRES 4 A 113 TYR HIS HIS THR GLY ASN ASN THR PHE ARG VAL VAL GLY SEQRES 5 A 113 ARG LYS ILE GLN ASP HIS GLN VAL VAL ILE ASN CYS ALA SEQRES 6 A 113 ILE PRO LYS GLY LEU LYS TYR ASN GLN ALA THR GLN THR SEQRES 7 A 113 PHE HIS GLN TRP ARG ASP ALA ARG GLN VAL TYR GLY LEU SEQRES 8 A 113 ASN PHE GLY SER LYS GLU ASP ALA ASN VAL PHE ALA SER SEQRES 9 A 113 ALA MET MET HIS ALA LEU GLU VAL LEU SEQRES 1 C 6 ACE 2L5 PRO PRO 92B NH2 SEQRES 1 D 6 ACE 2L5 PRO PRO 92B NH2 SEQRES 1 E 6 ACE 2L5 PRO PRO 92B NH2 HET ACE C 1 6 HET 2L5 C 2 20 HET 92B C 5 30 HET NH2 C 6 3 HET ACE D 1 6 HET 2L5 D 2 20 HET 92B D 5 30 HET NH2 D 6 3 HET ACE E 1 6 HET 2L5 E 2 20 HET 92B E 5 30 HET NH2 E 6 3 HET CL B 201 1 HETNAM ACE ACETYL GROUP HETNAM 2L5 2-CHLORO-L-PHENYLALANINE HETNAM 92B (3~{S},7~{R},10~{R},13~{S})-2-OXIDANYLIDENE-1,4- HETNAM 2 92B DIAZATRICYCLO[8.3.0.0^{3,7}]TRIDEC-8-ENE-13-CARBOXYLIC HETNAM 3 92B ACID HETNAM NH2 AMINO GROUP HETNAM CL CHLORIDE ION FORMUL 3 ACE 3(C2 H4 O) FORMUL 3 2L5 3(C9 H10 CL N O2) FORMUL 3 92B 3(C12 H16 N2 O3) FORMUL 3 NH2 3(H2 N) FORMUL 6 CL CL 1- FORMUL 7 HOH *65(H2 O) HELIX 1 AA1 SER B 93 LEU B 111 1 19 HELIX 2 AA2 GLY A 27 SER A 29 5 3 HELIX 3 AA3 SER A 93 LEU A 111 1 19 SHEET 1 AA1 5 LYS B 22 PRO B 25 0 SHEET 2 AA1 5 GLU B 3 ASP B 17 -1 N ASP B 17 O LYS B 22 SHEET 3 AA1 5 SER B 33 HIS B 40 -1 O VAL B 35 N ALA B 9 SHEET 4 AA1 5 THR B 45 LYS B 52 -1 O VAL B 49 N HIS B 36 SHEET 5 AA1 5 VAL B 58 ALA B 63 -1 O CYS B 62 N VAL B 48 SHEET 1 AA2 5 LYS B 22 PRO B 25 0 SHEET 2 AA2 5 GLU B 3 ASP B 17 -1 N ASP B 17 O LYS B 22 SHEET 3 AA2 5 VAL B 86 PHE B 91 -1 O GLY B 88 N MET B 14 SHEET 4 AA2 5 PHE B 77 ARG B 81 -1 N HIS B 78 O LEU B 89 SHEET 5 AA2 5 ASN B 71 THR B 74 -1 N ASN B 71 O GLN B 79 SHEET 1 AA3 5 LYS A 22 PRO A 25 0 SHEET 2 AA3 5 CYS A 7 ASP A 17 -1 N ASP A 17 O LYS A 22 SHEET 3 AA3 5 SER A 33 HIS A 40 -1 O VAL A 35 N ALA A 9 SHEET 4 AA3 5 THR A 45 LYS A 52 -1 O VAL A 49 N HIS A 36 SHEET 5 AA3 5 VAL A 58 ALA A 63 -1 O CYS A 62 N VAL A 48 SHEET 1 AA4 5 LYS A 22 PRO A 25 0 SHEET 2 AA4 5 CYS A 7 ASP A 17 -1 N ASP A 17 O LYS A 22 SHEET 3 AA4 5 VAL A 86 PHE A 91 -1 O GLY A 88 N MET A 14 SHEET 4 AA4 5 PHE A 77 ARG A 81 -1 N HIS A 78 O LEU A 89 SHEET 5 AA4 5 TYR A 70 GLN A 72 -1 N ASN A 71 O GLN A 79 LINK C ACE C 1 N 2L5 C 2 1555 1555 1.32 LINK C 2L5 C 2 N PRO C 3 1555 1555 1.32 LINK C PRO C 4 N 92B C 5 1555 1555 1.32 LINK C 92B C 5 N NH2 C 6 1555 1555 1.32 LINK C ACE D 1 N 2L5 D 2 1555 1555 1.34 LINK C 2L5 D 2 N PRO D 3 1555 1555 1.34 LINK C PRO D 4 N 92B D 5 1555 1555 1.35 LINK C 92B D 5 N NH2 D 6 1555 1555 1.33 LINK C ACE E 1 N 2L5 E 2 1555 1555 1.34 LINK C 2L5 E 2 N PRO E 3 1555 1555 1.33 LINK C PRO E 4 N 92B E 5 1555 1555 1.34 LINK C 92B E 5 N NH2 E 6 1555 1555 1.33 CISPEP 1 MET B 1 SER B 2 0 0.40 SITE 1 AC1 2 TRP B 23 NH2 C 6 SITE 1 AC2 7 TYR A 16 ASP A 18 GLN B 79 ARG B 81 SITE 2 AC2 7 VAL B 86 PRO C 3 HOH C 102 SITE 1 AC3 7 ASP A 18 GLN B 79 ARG B 81 VAL B 86 SITE 2 AC3 7 ACE C 1 PRO C 4 HOH C 102 SITE 1 AC4 8 TRP B 23 ASP B 55 GLN B 57 PHE B 77 SITE 2 AC4 8 PRO C 3 NH2 C 6 HOH C 101 HOH C 103 SITE 1 AC5 8 TRP B 23 GLN B 57 VAL B 58 PHE B 77 SITE 2 AC5 8 CL B 201 PRO C 4 HOH C 101 HOH C 103 SITE 1 AC6 7 MET B 1 HIS B 36 TYR B 38 VAL B 49 SITE 2 AC6 7 ARG B 51 HOH B 303 PRO D 3 SITE 1 AC7 8 HIS B 36 TYR B 38 ARG B 47 VAL B 49 SITE 2 AC7 8 ARG B 51 HOH B 303 ACE D 1 PRO D 4 SITE 1 AC8 4 ARG B 47 ASN B 61 PRO D 3 NH2 D 6 SITE 1 AC9 3 ARG B 47 ASN B 61 PRO D 4 SITE 1 AD1 8 ASN A 71 GLN A 79 ARG A 81 VAL A 86 SITE 2 AD1 8 TYR B 16 ASP B 18 PRO E 3 PRO E 4 SITE 1 AD2 9 TYR A 16 TRP A 23 ASN A 71 GLN A 79 SITE 2 AD2 9 ARG A 81 VAL A 86 ASP B 18 ACE E 1 SITE 3 AD2 9 PRO E 4 SITE 1 AD3 6 TRP A 23 GLN A 54 PHE A 77 2L5 E 2 SITE 2 AD3 6 PRO E 3 NH2 E 6 SITE 1 AD4 5 TRP A 23 GLN A 54 ASP A 55 PHE A 77 SITE 2 AD4 5 PRO E 4 CRYST1 47.266 47.266 202.722 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021157 0.012215 0.000000 0.00000 SCALE2 0.000000 0.024430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004933 0.00000