HEADER TRANSFERASE 27-FEB-17 5N9V TITLE NMR SOLUTION STRUCTURE OF UBL5 DOMAIN FROM POLYUBIQUITIN LOCUS OF TITLE 2 T.THERMOPHILA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)(+)--ARGININE ADP-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MONO(ADP-RIBOSYL)TRANSFERASE; COMPND 5 EC: 2.4.2.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 312017; SOURCE 4 STRAIN: SB210; SOURCE 5 GENE: TTHERM_00085190; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-GRASP, ULD, POLYUBIQUITIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.CHIARINI,H.TOSSAVAINEN REVDAT 4 14-JUN-23 5N9V 1 REMARK REVDAT 3 25-SEP-19 5N9V 1 JRNL REMARK REVDAT 2 08-MAY-19 5N9V 1 REMARK REVDAT 1 21-MAR-18 5N9V 0 JRNL AUTH V.CHIARINI,H.TOSSAVAINEN,V.SHARMA,G.COLOTTI JRNL TITL NMR STRUCTURE OF A NON-CONJUGATABLE, ADP-RIBOSYLATION JRNL TITL 2 ASSOCIATED, UBIQUITIN-LIKE DOMAIN FROM TETRAHYMENA JRNL TITL 3 THERMOPHILA POLYUBIQUITIN LOCUS. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1863 749 2019 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 30690122 JRNL DOI 10.1016/J.BBAGEN.2019.01.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003740. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 4 MM [U-13C; U-15N] REMARK 210 T.THERMOPHILA BUBL1-UBL5, 20 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HN(CA)CO; 3D HCC(CO)NH; REMARK 210 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 35 -62.95 -95.82 REMARK 500 2 ASN A 37 9.23 58.81 REMARK 500 3 LYS A 34 21.10 -70.01 REMARK 500 3 LYS A 35 -51.23 -141.64 REMARK 500 3 ILE A 63 49.81 -83.84 REMARK 500 3 ILE A 64 -65.28 -127.58 REMARK 500 4 LEU A 78 105.61 -53.44 REMARK 500 4 LEU A 80 42.13 -144.68 REMARK 500 5 HIS A 2 -97.04 -137.40 REMARK 500 5 ILE A 63 49.91 -95.82 REMARK 500 6 THR A 36 -20.13 -141.85 REMARK 500 6 ALA A 48 18.22 53.38 REMARK 500 7 ILE A 64 -84.31 -124.71 REMARK 500 8 ALA A 48 14.34 55.73 REMARK 500 8 ILE A 64 -53.20 -138.33 REMARK 500 8 LEU A 80 -30.47 -152.23 REMARK 500 9 ASN A 37 -3.13 65.36 REMARK 500 12 PRO A 21 -9.39 -56.52 REMARK 500 12 THR A 36 -21.04 -142.79 REMARK 500 13 ASN A 11 7.86 -69.02 REMARK 500 13 PRO A 21 -9.47 -59.18 REMARK 500 13 ASN A 37 14.22 59.48 REMARK 500 13 ASP A 65 93.63 -69.23 REMARK 500 13 LEU A 80 30.46 -82.34 REMARK 500 14 ASP A 65 39.98 -76.57 REMARK 500 15 HIS A 2 -16.08 -145.01 REMARK 500 15 PRO A 21 -6.08 -58.76 REMARK 500 15 ASP A 65 84.38 -64.67 REMARK 500 18 ASN A 11 8.21 -69.81 REMARK 500 18 THR A 36 -22.47 -140.44 REMARK 500 18 ASN A 37 14.56 58.05 REMARK 500 18 ILE A 64 -36.36 -139.29 REMARK 500 19 ASP A 65 21.32 -68.53 REMARK 500 20 ALA A 48 17.73 52.63 REMARK 500 20 LYS A 77 16.37 58.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34106 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF UBL5 DOMAIN FROM POLYUBIQUITIN LOCUS OF REMARK 900 T.THERMOPHILA. DBREF 5N9V A 4 81 UNP Q236S9 Q236S9_TETTS 630 707 SEQADV 5N9V SER A 1 UNP Q236S9 EXPRESSION TAG SEQADV 5N9V HIS A 2 UNP Q236S9 EXPRESSION TAG SEQADV 5N9V MET A 3 UNP Q236S9 EXPRESSION TAG SEQRES 1 A 81 SER HIS MET GLN VAL SER ILE GLU PHE GLN ASN GLY GLU SEQRES 2 A 81 LYS LEU LYS PHE ASN VAL GLN PRO SER HIS LYS ILE LEU SEQRES 3 A 81 ASP ILE LYS GLU MET ILE PHE LYS LYS THR ASN ILE ASN SEQRES 4 A 81 VAL LYS ASP GLN SER LEU LYS PHE ALA GLY ASN GLU MET SEQRES 5 A 81 ILE ASN GLN LYS THR LEU SER ASP TYR SER ILE ILE ASP SEQRES 6 A 81 SER THR GLU GLU PHE THR LEU HIS LEU GLU THR LYS LEU SEQRES 7 A 81 ASP LEU MET HELIX 1 AA1 LYS A 24 ASN A 37 1 14 HELIX 2 AA2 THR A 57 SER A 62 1 6 SHEET 1 AA1 5 LYS A 14 VAL A 19 0 SHEET 2 AA1 5 MET A 3 GLU A 8 -1 N VAL A 5 O PHE A 17 SHEET 3 AA1 5 THR A 71 LEU A 74 1 O LEU A 72 N GLU A 8 SHEET 4 AA1 5 LEU A 45 PHE A 47 -1 N LYS A 46 O HIS A 73 SHEET 5 AA1 5 ASN A 50 GLU A 51 -1 O ASN A 50 N PHE A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1