HEADER HYDROLASE 27-FEB-17 5NA7 TITLE STRUCTURE OF DPP III FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIPEPTIDYL-PEPTIDASE III; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.14.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 GENE: BT_1846; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: B834; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAZMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS BACTEROIDES THETAIOTAOMICRON, METALLOPEPTIDASE, DIPEPTIDYL PEPTIDASE KEYWDS 2 III, ZINC-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.SABLJIC,M.LUIC REVDAT 2 17-JAN-24 5NA7 1 ATOM REVDAT 1 15-NOV-17 5NA7 0 JRNL AUTH I.SABLJIC,N.MESTROVIC,B.VUKELIC,P.MACHEROUX,K.GRUBER,M.LUIC, JRNL AUTH 2 M.ABRAMIC JRNL TITL CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE III FROM THE HUMAN JRNL TITL 2 GUT SYMBIONT BACTEROIDES THETAIOTAOMICRON. JRNL REF PLOS ONE V. 12 87295 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 29095893 JRNL DOI 10.1371/JOURNAL.PONE.0187295 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5969 - 5.4946 1.00 2939 130 0.1777 0.2173 REMARK 3 2 5.4946 - 4.3621 1.00 2804 141 0.1562 0.1763 REMARK 3 3 4.3621 - 3.8109 0.99 2696 169 0.1609 0.2049 REMARK 3 4 3.8109 - 3.4626 0.99 2739 138 0.2521 0.3147 REMARK 3 5 3.4626 - 3.2145 1.00 2735 146 0.2116 0.2155 REMARK 3 6 3.2145 - 3.0250 1.00 2732 156 0.2287 0.3262 REMARK 3 7 3.0250 - 2.8735 1.00 2710 127 0.2285 0.2797 REMARK 3 8 2.8735 - 2.7484 1.00 2744 132 0.2146 0.2356 REMARK 3 9 2.7484 - 2.6426 1.00 2713 141 0.2094 0.2614 REMARK 3 10 2.6426 - 2.5515 1.00 2702 160 0.2143 0.2618 REMARK 3 11 2.5515 - 2.4717 1.00 2711 124 0.2186 0.2575 REMARK 3 12 2.4717 - 2.4010 0.99 2713 116 0.2139 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5302 REMARK 3 ANGLE : 0.807 7189 REMARK 3 CHIRALITY : 0.051 784 REMARK 3 PLANARITY : 0.005 935 REMARK 3 DIHEDRAL : 17.307 3156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 414) REMARK 3 ORIGIN FOR THE GROUP (A): 82.7191 95.3411 10.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.2625 REMARK 3 T33: 0.2853 T12: -0.0256 REMARK 3 T13: -0.0590 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.3432 L22: 0.0447 REMARK 3 L33: 0.4321 L12: 0.0202 REMARK 3 L13: -0.3779 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.0166 S13: 0.1395 REMARK 3 S21: -0.0913 S22: 0.0042 S23: 0.1590 REMARK 3 S31: -0.1101 S32: -0.1799 S33: 0.0377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 623) REMARK 3 ORIGIN FOR THE GROUP (A): 81.8290 99.0555 30.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2297 REMARK 3 T33: 0.1888 T12: -0.0106 REMARK 3 T13: 0.0098 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.2394 L22: 1.1067 REMARK 3 L33: 1.1215 L12: -0.3753 REMARK 3 L13: 0.1368 L23: 0.1747 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.0446 S13: -0.0047 REMARK 3 S21: -0.0304 S22: 0.0051 S23: 0.0278 REMARK 3 S31: -0.0448 S32: 0.0106 S33: -0.0460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.0136 104.1227 2.8926 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.1676 REMARK 3 T33: 0.2501 T12: -0.0517 REMARK 3 T13: -0.0567 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.8651 L22: 0.6187 REMARK 3 L33: 0.8140 L12: 0.3934 REMARK 3 L13: 0.5026 L23: 0.4682 REMARK 3 S TENSOR REMARK 3 S11: -0.1853 S12: 0.0712 S13: 0.2407 REMARK 3 S21: -0.2154 S22: 0.0403 S23: 0.1322 REMARK 3 S31: -0.1346 S32: 0.0302 S33: 0.0845 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 624 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.7377 89.4965 4.4072 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.1858 REMARK 3 T33: 0.2153 T12: -0.0534 REMARK 3 T13: 0.0004 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.6462 L22: 1.5773 REMARK 3 L33: 0.7084 L12: 0.4133 REMARK 3 L13: -0.1894 L23: 0.5618 REMARK 3 S TENSOR REMARK 3 S11: -0.1495 S12: 0.0727 S13: -0.1415 REMARK 3 S21: -0.1789 S22: 0.0389 S23: 0.0652 REMARK 3 S31: 0.0026 S32: 0.0832 S33: 0.0927 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97600 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5NA6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M SODIUM COCODYLATE PH REMARK 280 6.5, 2.0 M NH4SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.01633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.03267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.03267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.01633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1017 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 CYS A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 LYS A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ASP A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 GLY A 361 REMARK 465 VAL A 362 REMARK 465 SER A 363 REMARK 465 LEU A 676 REMARK 465 GLU A 677 REMARK 465 HIS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 CD CE NZ REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 282 CD CE NZ REMARK 470 LYS A 358 CD CE NZ REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 HIS A 395 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 LYS A 641 CG CD CE NZ REMARK 470 ASP A 642 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 28 -66.63 -108.31 REMARK 500 ALA A 32 -130.95 52.27 REMARK 500 VAL A 41 78.00 -115.85 REMARK 500 MET A 122 -12.36 79.48 REMARK 500 THR A 306 -71.29 -112.17 REMARK 500 LYS A 468 -131.65 55.26 REMARK 500 MET A 517 -70.82 -149.64 REMARK 500 ASN A 653 57.95 -96.69 REMARK 500 ASP A 655 -166.80 -100.05 REMARK 500 ASN A 674 71.42 -116.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1179 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1181 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 7.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 448 NE2 REMARK 620 2 HIS A 453 NE2 89.8 REMARK 620 3 GLU A 476 OE2 87.3 81.1 REMARK 620 4 HOH A 960 O 173.1 89.7 85.9 REMARK 620 5 HOH A1050 O 89.9 175.8 94.7 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 705 DBREF 5NA7 A 1 675 UNP Q8A6N1 Q8A6N1_BACTN 1 675 SEQADV 5NA7 LEU A 676 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 GLU A 677 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 678 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 679 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 680 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 681 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 682 UNP Q8A6N1 EXPRESSION TAG SEQADV 5NA7 HIS A 683 UNP Q8A6N1 EXPRESSION TAG SEQRES 1 A 683 MET ALA VAL THR ALA THR ILE LEU ALA SER CYS GLY GLY SEQRES 2 A 683 ALA LYS THR THR THR ALA GLU ALA ASP LYS PHE ASP TYR SEQRES 3 A 683 THR VAL GLU GLN PHE ALA ASP LEU GLN ILE LEU ARG TYR SEQRES 4 A 683 LYS VAL PRO GLU PHE GLU THR LEU THR LEU LYS GLN LYS SEQRES 5 A 683 GLU LEU VAL TYR TYR LEU THR GLN ALA ALA LEU GLU GLY SEQRES 6 A 683 ARG ASP ILE LEU PHE ASP GLN ASN GLY LYS TYR ASN LEU SEQRES 7 A 683 ARG ILE ARG ARG MET LEU GLU ALA VAL TYR THR ASN TYR SEQRES 8 A 683 LYS GLY ASP LYS SER ALA PRO ASP PHE LYS ASN MET GLU SEQRES 9 A 683 VAL TYR LEU LYS ARG VAL TRP PHE SER ASN GLY ILE HIS SEQRES 10 A 683 HIS HIS TYR GLY MET GLU LYS PHE VAL PRO GLY PHE SER SEQRES 11 A 683 GLN ASP PHE LEU LYS GLN ALA VAL LEU GLY THR ASP ALA SEQRES 12 A 683 GLN LEU LEU PRO LEU SER GLU GLY GLN THR ALA GLU GLN SEQRES 13 A 683 LEU CYS ASP GLU LEU PHE PRO VAL MET PHE ASP PRO ALA SEQRES 14 A 683 ILE LEU ALA LYS ARG VAL ASN GLN ALA ASP GLY GLU ASP SEQRES 15 A 683 LEU VAL LEU THR SER ALA CYS ASN TYR TYR ASP GLY VAL SEQRES 16 A 683 THR GLN GLN GLU ALA GLU SER PHE TYR GLY ALA MET LYS SEQRES 17 A 683 ASP PRO LYS ASP GLU THR PRO VAL SER TYR GLY LEU ASN SEQRES 18 A 683 SER ARG LEU VAL LYS GLU ASP GLY LYS ILE GLN GLU LYS SEQRES 19 A 683 VAL TRP LYS VAL GLY GLY LEU TYR THR GLN ALA ILE GLU SEQRES 20 A 683 LYS ILE VAL TYR TRP LEU LYS LYS ALA GLU THR VAL ALA SEQRES 21 A 683 GLU ASN ASP ALA GLN LYS ALA VAL ILE SER LYS LEU ILE SEQRES 22 A 683 GLN PHE TYR GLU THR GLY SER LEU LYS ASP PHE ASP GLU SEQRES 23 A 683 TYR ALA ILE LEU TRP VAL LYS ASP LEU ASP SER ARG ILE SEQRES 24 A 683 ASP PHE VAL ASN GLY PHE THR GLU SER TYR GLY ASP PRO SEQRES 25 A 683 LEU GLY VAL LYS ALA SER TRP GLU SER LEU VAL ASN PHE SEQRES 26 A 683 LYS ASP LEU ASP ALA THR HIS ARG THR GLU ILE ILE SER SEQRES 27 A 683 SER ASN ALA GLN TRP PHE GLU ASP HIS SER PRO VAL ASP SEQRES 28 A 683 LYS SER PHE LYS LYS GLU LYS VAL LYS GLY VAL SER ALA SEQRES 29 A 683 LYS VAL ILE THR ALA ALA ILE LEU ALA GLY ASP LEU TYR SEQRES 30 A 683 PRO ALA THR ALA ILE GLY ILE ASN LEU PRO ASN ALA ASN SEQRES 31 A 683 TRP ILE ARG ALA HIS HIS GLY SER LYS SER VAL THR ILE SEQRES 32 A 683 GLY ASN ILE THR ASP ALA TYR ASN LYS ALA ALA HIS GLY SEQRES 33 A 683 ASN GLY PHE ASN GLU GLU PHE VAL CYS ASN ASP GLU GLU SEQRES 34 A 683 ARG GLN ARG ILE ASP GLN TYR GLY ASP LEU THR GLY GLU SEQRES 35 A 683 LEU HIS THR ASP LEU HIS GLU CYS LEU GLY HIS GLY SER SEQRES 36 A 683 GLY LYS LEU LEU PRO GLY VAL ASP PRO ASP ALA LEU LYS SEQRES 37 A 683 ALA TYR GLY SER THR ILE GLU GLU ALA ARG ALA ASP LEU SEQRES 38 A 683 PHE GLY LEU TYR TYR VAL ALA ASP PRO LYS LEU VAL GLU SEQRES 39 A 683 LEU LYS LEU VAL PRO ASP ALA GLU ALA TYR LYS ALA GLU SEQRES 40 A 683 TYR TYR THR PHE LEU MET ASN GLY LEU MET THR GLN LEU SEQRES 41 A 683 VAL ARG ILE GLU PRO GLY ASN ASN ILE GLU GLU ALA HIS SEQRES 42 A 683 MET ARG ASN ARG GLN LEU ILE ALA ARG TRP VAL PHE GLU SEQRES 43 A 683 LYS GLY ALA PRO ASP LYS VAL VAL GLU MET VAL LYS LYS SEQRES 44 A 683 ASP GLY LYS THR TYR VAL VAL VAL ASN ASP TYR GLU LYS SEQRES 45 A 683 VAL ARG GLN LEU PHE GLY GLU LEU LEU ALA GLU ILE GLN SEQRES 46 A 683 ARG ILE LYS SER THR GLY ASP PHE GLU GLY ALA ARG THR SEQRES 47 A 683 LEU VAL GLU ASN TYR ALA VAL LYS VAL ASP PRO ALA LEU SEQRES 48 A 683 HIS ALA GLU VAL LEU ALA ARG TYR LYS LYS LEU ASN LEU SEQRES 49 A 683 ALA PRO TYR LYS GLY PHE ILE ASN PRO VAL TYR GLU LEU SEQRES 50 A 683 VAL THR ASP LYS ASP GLY ASN ILE THR ASP VAL THR VAL SEQRES 51 A 683 SER TYR ASN GLU ASP TYR VAL GLU GLN MET LEU ARG TYR SEQRES 52 A 683 SER LYS ASP TYR SER PRO LEU PRO SER VAL ASN ASN LEU SEQRES 53 A 683 GLU HIS HIS HIS HIS HIS HIS HET ZN A 701 1 HET SO4 A 702 5 HET SO4 A 703 5 HET CL A 704 1 HET CL A 705 1 HET CL A 706 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *382(H2 O) HELIX 1 AA1 GLU A 43 LEU A 47 5 5 HELIX 2 AA2 THR A 48 GLU A 64 1 17 HELIX 3 AA3 GLY A 65 ASN A 73 1 9 HELIX 4 AA4 TYR A 76 TYR A 91 1 16 HELIX 5 AA5 ALA A 97 ASN A 114 1 18 HELIX 6 AA6 SER A 130 GLY A 140 1 11 HELIX 7 AA7 ASP A 142 LEU A 146 5 5 HELIX 8 AA8 THR A 153 ASP A 167 1 15 HELIX 9 AA9 THR A 196 LYS A 208 1 13 HELIX 10 AB1 TYR A 242 THR A 258 1 17 HELIX 11 AB2 ASN A 262 GLY A 279 1 18 HELIX 12 AB3 SER A 280 ASP A 294 1 15 HELIX 13 AB4 ASP A 327 ASN A 340 1 14 HELIX 14 AB5 ASN A 340 SER A 348 1 9 HELIX 15 AB6 ASP A 351 LYS A 355 5 5 HELIX 16 AB7 ALA A 389 HIS A 396 1 8 HELIX 17 AB8 GLY A 404 HIS A 415 1 12 HELIX 18 AB9 GLY A 418 VAL A 424 1 7 HELIX 19 AC1 ASN A 426 LEU A 451 1 26 HELIX 20 AC2 LEU A 467 ALA A 469 5 3 HELIX 21 AC3 TYR A 470 ALA A 488 1 19 HELIX 22 AC4 PRO A 490 LEU A 495 1 6 HELIX 23 AC5 ALA A 503 MET A 517 1 15 HELIX 24 AC6 THR A 518 ILE A 523 5 6 HELIX 25 AC7 GLU A 531 ALA A 549 1 19 HELIX 26 AC8 PRO A 550 LYS A 552 5 3 HELIX 27 AC9 ASP A 569 GLY A 591 1 23 HELIX 28 AD1 ASP A 592 ALA A 604 1 13 HELIX 29 AD2 ASP A 608 LYS A 621 1 14 HELIX 30 AD3 ASP A 655 TYR A 667 1 13 SHEET 1 AA1 3 THR A 27 PHE A 31 0 SHEET 2 AA1 3 LEU A 34 ARG A 38 -1 O ILE A 36 N VAL A 28 SHEET 3 AA1 3 TYR A 627 ILE A 631 1 O GLY A 629 N LEU A 37 SHEET 1 AA2 3 TYR A 192 ASP A 193 0 SHEET 2 AA2 3 SER A 222 VAL A 225 1 O LEU A 224 N ASP A 193 SHEET 3 AA2 3 GLN A 232 VAL A 235 -1 O LYS A 234 N ARG A 223 SHEET 1 AA3 5 ILE A 299 PHE A 305 0 SHEET 2 AA3 5 TRP A 319 LYS A 326 -1 O LEU A 322 N VAL A 302 SHEET 3 AA3 5 LYS A 365 GLY A 374 -1 O ALA A 370 N VAL A 323 SHEET 4 AA3 5 LYS A 399 ILE A 403 1 O THR A 402 N ILE A 367 SHEET 5 AA3 5 GLY A 383 LEU A 386 -1 N LEU A 386 O LYS A 399 SHEET 1 AA4 2 VAL A 554 LYS A 559 0 SHEET 2 AA4 2 LYS A 562 VAL A 567 -1 O VAL A 566 N GLU A 555 SHEET 1 AA5 2 VAL A 634 THR A 639 0 SHEET 2 AA5 2 ILE A 645 SER A 651 -1 O THR A 646 N VAL A 638 LINK NE2 HIS A 448 ZN ZN A 701 1555 1555 2.05 LINK NE2 HIS A 453 ZN ZN A 701 1555 1555 2.04 LINK OE2 GLU A 476 ZN ZN A 701 1555 1555 1.95 LINK ZN ZN A 701 O HOH A 960 1555 1555 2.11 LINK ZN ZN A 701 O HOH A1050 1555 1555 2.13 CISPEP 1 TYR A 377 PRO A 378 0 -7.00 CISPEP 2 LEU A 386 PRO A 387 0 -2.94 SITE 1 AC1 5 HIS A 448 HIS A 453 GLU A 476 HOH A 960 SITE 2 AC1 5 HOH A1050 SITE 1 AC2 4 LYS A 356 GLU A 357 LYS A 358 LYS A 457 SITE 1 AC3 6 ARG A 432 GLU A 502 LYS A 505 LYS A 552 SITE 2 AC3 6 TYR A 570 HOH A 813 SITE 1 AC4 1 GLY A 418 CRYST1 103.509 103.509 141.049 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009661 0.005578 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007090 0.00000