HEADER SIGNALING PROTEIN 01-MAR-17 5NB8 TITLE STRUCTURE OF VWC DOMAIN FROM CCN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NOV HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 100-195; COMPND 5 SYNONYM: NOVH,CCN FAMILY MEMBER 3,NEPHROBLASTOMA-OVEREXPRESSED GENE COMPND 6 PROTEIN HOMOLOG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NOV, CCN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAT4 KEYWDS CCN3, VWC, DOMAINS, SIGNALLING, BMP, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.-R.XU,M.HYVONEN REVDAT 2 09-AUG-17 5NB8 1 JRNL REVDAT 1 14-JUN-17 5NB8 0 JRNL AUTH E.R.XU,E.E.BLYTHE,G.FISCHER,M.HYVONEN JRNL TITL STRUCTURAL ANALYSES OF VON WILLEBRAND FACTOR C DOMAINS OF JRNL TITL 2 COLLAGEN 2A AND CCN3 REVEAL AN ALTERNATIVE MODE OF BINDING JRNL TITL 3 TO BONE MORPHOGENETIC PROTEIN-2. JRNL REF J. BIOL. CHEM. V. 292 12516 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28584056 JRNL DOI 10.1074/JBC.M117.788992 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 25446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5831 - 4.3636 0.98 2678 148 0.1709 0.1912 REMARK 3 2 4.3636 - 3.4654 0.99 2694 156 0.1646 0.1946 REMARK 3 3 3.4654 - 3.0279 0.99 2691 144 0.1865 0.2115 REMARK 3 4 3.0279 - 2.7513 0.99 2696 138 0.2064 0.2335 REMARK 3 5 2.7513 - 2.5543 0.99 2703 143 0.2117 0.2444 REMARK 3 6 2.5543 - 2.4038 0.98 2661 140 0.2179 0.2753 REMARK 3 7 2.4038 - 2.2834 0.99 2744 147 0.2243 0.2257 REMARK 3 8 2.2834 - 2.1841 0.97 2667 137 0.2407 0.2827 REMARK 3 9 2.1841 - 2.1000 0.95 2614 145 0.2530 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2255 REMARK 3 ANGLE : 0.872 3063 REMARK 3 CHIRALITY : 0.055 303 REMARK 3 PLANARITY : 0.007 418 REMARK 3 DIHEDRAL : 17.184 1403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 1.6965 -4.3400 6.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.3223 REMARK 3 T33: 0.3248 T12: 0.0224 REMARK 3 T13: -0.0393 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.4505 L22: 1.8572 REMARK 3 L33: 2.4872 L12: 0.8293 REMARK 3 L13: -0.9646 L23: -1.4495 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.1593 S13: -0.0561 REMARK 3 S21: 0.0651 S22: -0.0015 S23: -0.0251 REMARK 3 S31: -0.0483 S32: 0.0377 S33: -0.0493 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -1.8853 5.0488 -7.2081 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.3368 REMARK 3 T33: 0.2647 T12: 0.0344 REMARK 3 T13: -0.0290 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.3541 L22: 3.0654 REMARK 3 L33: 3.8229 L12: 2.4487 REMARK 3 L13: -2.0060 L23: -1.8552 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.3583 S13: 0.0749 REMARK 3 S21: -0.0654 S22: 0.0057 S23: 0.0532 REMARK 3 S31: -0.1142 S32: 0.1547 S33: -0.0388 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -8.2503 17.3388 15.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2538 REMARK 3 T33: 0.3005 T12: -0.0170 REMARK 3 T13: -0.0358 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.8627 L22: 2.1797 REMARK 3 L33: 3.0677 L12: -1.7187 REMARK 3 L13: -1.5096 L23: 2.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0814 S13: 0.0166 REMARK 3 S21: -0.0300 S22: 0.0006 S23: -0.0336 REMARK 3 S31: -0.0620 S32: -0.0571 S33: -0.0543 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -4.6063 26.6756 29.9002 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.3291 REMARK 3 T33: 0.2709 T12: -0.0083 REMARK 3 T13: -0.0247 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.3500 L22: 2.0638 REMARK 3 L33: 4.2563 L12: -1.3416 REMARK 3 L13: -1.7496 L23: 1.7242 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.3208 S13: -0.0008 REMARK 3 S21: 0.0634 S22: 0.0104 S23: 0.0700 REMARK 3 S31: -0.2251 S32: -0.0227 S33: -0.1066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA/K TARTRATE, 0.4M NACL, 0.1 M REMARK 280 IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 169 REMARK 465 GLU A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 172 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 LEU A 175 REMARK 465 GLY A 176 REMARK 465 GLY A 177 REMARK 465 LEU A 178 REMARK 465 ALA A 179 REMARK 465 LEU A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 TYR A 183 REMARK 465 ARG A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 ALA A 187 REMARK 465 THR A 188 REMARK 465 VAL A 189 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 GLU A 192 REMARK 465 LEU A 193 REMARK 465 SER A 194 REMARK 465 ASP A 195 REMARK 465 SER B 169 REMARK 465 GLU B 170 REMARK 465 GLU B 171 REMARK 465 LYS B 172 REMARK 465 GLY B 173 REMARK 465 THR B 174 REMARK 465 LEU B 175 REMARK 465 GLY B 176 REMARK 465 GLY B 177 REMARK 465 LEU B 178 REMARK 465 ALA B 179 REMARK 465 LEU B 180 REMARK 465 PRO B 181 REMARK 465 ALA B 182 REMARK 465 TYR B 183 REMARK 465 ARG B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 ALA B 187 REMARK 465 THR B 188 REMARK 465 VAL B 189 REMARK 465 GLY B 190 REMARK 465 VAL B 191 REMARK 465 GLU B 192 REMARK 465 LEU B 193 REMARK 465 SER B 194 REMARK 465 ASP B 195 REMARK 465 SER C 169 REMARK 465 GLU C 170 REMARK 465 GLU C 171 REMARK 465 LYS C 172 REMARK 465 GLY C 173 REMARK 465 THR C 174 REMARK 465 LEU C 175 REMARK 465 GLY C 176 REMARK 465 GLY C 177 REMARK 465 LEU C 178 REMARK 465 ALA C 179 REMARK 465 LEU C 180 REMARK 465 PRO C 181 REMARK 465 ALA C 182 REMARK 465 TYR C 183 REMARK 465 ARG C 184 REMARK 465 PRO C 185 REMARK 465 GLU C 186 REMARK 465 ALA C 187 REMARK 465 THR C 188 REMARK 465 VAL C 189 REMARK 465 GLY C 190 REMARK 465 VAL C 191 REMARK 465 GLU C 192 REMARK 465 LEU C 193 REMARK 465 SER C 194 REMARK 465 ASP C 195 REMARK 465 SER D 169 REMARK 465 GLU D 170 REMARK 465 GLU D 171 REMARK 465 LYS D 172 REMARK 465 GLY D 173 REMARK 465 THR D 174 REMARK 465 LEU D 175 REMARK 465 GLY D 176 REMARK 465 GLY D 177 REMARK 465 LEU D 178 REMARK 465 ALA D 179 REMARK 465 LEU D 180 REMARK 465 PRO D 181 REMARK 465 ALA D 182 REMARK 465 TYR D 183 REMARK 465 ARG D 184 REMARK 465 PRO D 185 REMARK 465 GLU D 186 REMARK 465 ALA D 187 REMARK 465 THR D 188 REMARK 465 VAL D 189 REMARK 465 GLY D 190 REMARK 465 VAL D 191 REMARK 465 GLU D 192 REMARK 465 LEU D 193 REMARK 465 SER D 194 REMARK 465 ASP D 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET D 99 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 335 O HOH B 337 1.82 REMARK 500 O PRO D 147 O HOH D 301 1.92 REMARK 500 O GLY D 168 O HOH D 302 2.04 REMARK 500 O HOH B 320 O HOH B 332 2.07 REMARK 500 O HOH D 336 O HOH D 337 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 140 50.13 -103.61 REMARK 500 LEU D 140 52.76 -105.46 REMARK 500 ASP D 148 5.90 82.28 REMARK 500 CYS D 149 70.82 -153.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD D 201 DBREF 5NB8 A 100 195 UNP Q9QZQ5 NOV_RAT 100 195 DBREF 5NB8 B 100 195 UNP Q9QZQ5 NOV_RAT 100 195 DBREF 5NB8 C 100 195 UNP Q9QZQ5 NOV_RAT 100 195 DBREF 5NB8 D 100 195 UNP Q9QZQ5 NOV_RAT 100 195 SEQADV 5NB8 MET A 99 UNP Q9QZQ5 INITIATING METHIONINE SEQADV 5NB8 MET B 99 UNP Q9QZQ5 INITIATING METHIONINE SEQADV 5NB8 MET C 99 UNP Q9QZQ5 INITIATING METHIONINE SEQADV 5NB8 MET D 99 UNP Q9QZQ5 INITIATING METHIONINE SEQRES 1 A 97 MET GLU GLY ASP ASN CYS VAL PHE ASP GLY VAL ILE TYR SEQRES 2 A 97 ARG ASN GLY GLU LYS PHE GLU PRO ASN CYS GLN TYR HIS SEQRES 3 A 97 CYS THR CYS ARG ASP GLY GLN ILE GLY CYS VAL PRO ARG SEQRES 4 A 97 CYS GLN LEU ASP VAL LEU LEU PRO GLY PRO ASP CYS PRO SEQRES 5 A 97 ALA PRO LYS LYS VAL ALA VAL PRO GLY GLU CYS CYS GLU SEQRES 6 A 97 LYS TRP THR CYS GLY SER GLU GLU LYS GLY THR LEU GLY SEQRES 7 A 97 GLY LEU ALA LEU PRO ALA TYR ARG PRO GLU ALA THR VAL SEQRES 8 A 97 GLY VAL GLU LEU SER ASP SEQRES 1 B 97 MET GLU GLY ASP ASN CYS VAL PHE ASP GLY VAL ILE TYR SEQRES 2 B 97 ARG ASN GLY GLU LYS PHE GLU PRO ASN CYS GLN TYR HIS SEQRES 3 B 97 CYS THR CYS ARG ASP GLY GLN ILE GLY CYS VAL PRO ARG SEQRES 4 B 97 CYS GLN LEU ASP VAL LEU LEU PRO GLY PRO ASP CYS PRO SEQRES 5 B 97 ALA PRO LYS LYS VAL ALA VAL PRO GLY GLU CYS CYS GLU SEQRES 6 B 97 LYS TRP THR CYS GLY SER GLU GLU LYS GLY THR LEU GLY SEQRES 7 B 97 GLY LEU ALA LEU PRO ALA TYR ARG PRO GLU ALA THR VAL SEQRES 8 B 97 GLY VAL GLU LEU SER ASP SEQRES 1 C 97 MET GLU GLY ASP ASN CYS VAL PHE ASP GLY VAL ILE TYR SEQRES 2 C 97 ARG ASN GLY GLU LYS PHE GLU PRO ASN CYS GLN TYR HIS SEQRES 3 C 97 CYS THR CYS ARG ASP GLY GLN ILE GLY CYS VAL PRO ARG SEQRES 4 C 97 CYS GLN LEU ASP VAL LEU LEU PRO GLY PRO ASP CYS PRO SEQRES 5 C 97 ALA PRO LYS LYS VAL ALA VAL PRO GLY GLU CYS CYS GLU SEQRES 6 C 97 LYS TRP THR CYS GLY SER GLU GLU LYS GLY THR LEU GLY SEQRES 7 C 97 GLY LEU ALA LEU PRO ALA TYR ARG PRO GLU ALA THR VAL SEQRES 8 C 97 GLY VAL GLU LEU SER ASP SEQRES 1 D 97 MET GLU GLY ASP ASN CYS VAL PHE ASP GLY VAL ILE TYR SEQRES 2 D 97 ARG ASN GLY GLU LYS PHE GLU PRO ASN CYS GLN TYR HIS SEQRES 3 D 97 CYS THR CYS ARG ASP GLY GLN ILE GLY CYS VAL PRO ARG SEQRES 4 D 97 CYS GLN LEU ASP VAL LEU LEU PRO GLY PRO ASP CYS PRO SEQRES 5 D 97 ALA PRO LYS LYS VAL ALA VAL PRO GLY GLU CYS CYS GLU SEQRES 6 D 97 LYS TRP THR CYS GLY SER GLU GLU LYS GLY THR LEU GLY SEQRES 7 D 97 GLY LEU ALA LEU PRO ALA TYR ARG PRO GLU ALA THR VAL SEQRES 8 D 97 GLY VAL GLU LEU SER ASP HET IMD A 201 5 HET IMD A 202 5 HET GOL B 201 6 HET IMD B 202 5 HET IMD C 201 5 HET IMD D 201 5 HETNAM IMD IMIDAZOLE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 IMD 5(C3 H5 N2 1+) FORMUL 7 GOL C3 H8 O3 FORMUL 11 HOH *155(H2 O) SHEET 1 AA1 2 CYS A 104 PHE A 106 0 SHEET 2 AA1 2 VAL A 109 TYR A 111 -1 O TYR A 111 N CYS A 104 SHEET 1 AA2 4 LYS A 116 PHE A 117 0 SHEET 2 AA2 4 TYR A 123 ARG A 128 -1 O CYS A 125 N PHE A 117 SHEET 3 AA2 4 GLN A 131 PRO A 136 -1 O GLY A 133 N THR A 126 SHEET 4 AA2 4 VAL B 142 LEU B 143 -1 O VAL B 142 N CYS A 134 SHEET 1 AA3 4 VAL A 142 LEU A 143 0 SHEET 2 AA3 4 GLN B 131 PRO B 136 -1 O CYS B 134 N VAL A 142 SHEET 3 AA3 4 TYR B 123 ARG B 128 -1 N HIS B 124 O VAL B 135 SHEET 4 AA3 4 LYS B 116 ASN B 120 -1 N PHE B 117 O CYS B 125 SHEET 1 AA4 2 PRO A 152 VAL A 155 0 SHEET 2 AA4 2 LYS A 164 CYS A 167 -1 O LYS A 164 N VAL A 155 SHEET 1 AA5 2 CYS B 104 PHE B 106 0 SHEET 2 AA5 2 VAL B 109 TYR B 111 -1 O TYR B 111 N CYS B 104 SHEET 1 AA6 2 PRO B 152 VAL B 155 0 SHEET 2 AA6 2 LYS B 164 CYS B 167 -1 O LYS B 164 N VAL B 155 SHEET 1 AA7 2 CYS C 104 PHE C 106 0 SHEET 2 AA7 2 VAL C 109 TYR C 111 -1 O TYR C 111 N CYS C 104 SHEET 1 AA8 4 LYS C 116 ASN C 120 0 SHEET 2 AA8 4 TYR C 123 ARG C 128 -1 O CYS C 125 N PHE C 117 SHEET 3 AA8 4 GLN C 131 PRO C 136 -1 O GLY C 133 N THR C 126 SHEET 4 AA8 4 VAL D 142 LEU D 143 -1 O VAL D 142 N CYS C 134 SHEET 1 AA9 4 VAL C 142 LEU C 143 0 SHEET 2 AA9 4 GLN D 131 PRO D 136 -1 O CYS D 134 N VAL C 142 SHEET 3 AA9 4 TYR D 123 ARG D 128 -1 N ARG D 128 O GLN D 131 SHEET 4 AA9 4 LYS D 116 ASN D 120 -1 N PHE D 117 O CYS D 125 SHEET 1 AB1 2 ALA C 151 VAL C 155 0 SHEET 2 AB1 2 LYS C 164 GLY C 168 -1 O LYS C 164 N VAL C 155 SHEET 1 AB2 2 CYS D 104 PHE D 106 0 SHEET 2 AB2 2 VAL D 109 TYR D 111 -1 O TYR D 111 N CYS D 104 SHEET 1 AB3 2 PRO D 152 VAL D 155 0 SHEET 2 AB3 2 LYS D 164 CYS D 167 -1 O LYS D 164 N VAL D 155 SSBOND 1 CYS A 104 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 121 CYS A 161 1555 1555 2.06 SSBOND 3 CYS A 125 CYS A 134 1555 1555 2.05 SSBOND 4 CYS A 138 CYS A 162 1555 1555 2.03 SSBOND 5 CYS A 149 CYS A 167 1555 1555 2.08 SSBOND 6 CYS B 104 CYS B 127 1555 1555 2.04 SSBOND 7 CYS B 121 CYS B 161 1555 1555 2.05 SSBOND 8 CYS B 125 CYS B 134 1555 1555 2.04 SSBOND 9 CYS B 138 CYS B 162 1555 1555 2.03 SSBOND 10 CYS B 149 CYS B 167 1555 1555 2.08 SSBOND 11 CYS C 104 CYS C 127 1555 1555 2.04 SSBOND 12 CYS C 121 CYS C 161 1555 1555 2.04 SSBOND 13 CYS C 125 CYS C 134 1555 1555 2.05 SSBOND 14 CYS C 138 CYS C 162 1555 1555 2.03 SSBOND 15 CYS C 149 CYS C 167 1555 1555 2.07 SSBOND 16 CYS D 104 CYS D 127 1555 1555 2.03 SSBOND 17 CYS D 121 CYS D 161 1555 1555 2.05 SSBOND 18 CYS D 125 CYS D 134 1555 1555 2.04 SSBOND 19 CYS D 138 CYS D 162 1555 1555 2.03 SSBOND 20 CYS D 149 CYS D 167 1555 1555 2.09 SITE 1 AC1 5 VAL A 157 LYS A 164 TRP A 165 VAL B 157 SITE 2 AC1 5 LYS B 164 SITE 1 AC2 6 ASP A 141 LYS A 154 GLU A 163 LYS A 164 SITE 2 AC2 6 TRP A 165 HOH A 322 SITE 1 AC3 8 HIS B 124 CYS B 125 THR B 126 ARG B 128 SITE 2 AC3 8 GLY B 133 CYS B 134 HOH B 304 ASN C 103 SITE 1 AC4 4 ARG B 137 VAL C 109 ILE C 110 GLU C 115 SITE 1 AC5 3 ASP C 141 LYS C 154 HOH C 302 SITE 1 AC6 5 VAL C 157 LYS C 164 TRP C 165 VAL D 157 SITE 2 AC6 5 LYS D 164 CRYST1 38.400 43.100 72.300 75.30 82.00 89.90 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026042 -0.000045 -0.003774 0.00000 SCALE2 0.000000 0.023202 -0.006145 0.00000 SCALE3 0.000000 0.000000 0.014449 0.00000