HEADER CHAPERONE 01-MAR-17 5NBB TITLE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE ESCHERICHIA COLI PROQ RNA TITLE 2 BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA CHAPERONE PROQ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 180-232; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: PROQ, YEBJ, YOBE, YOEC, B1831, JW5300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PROQ-PET-DUET KEYWDS FINO, PROQ, RNA CHAPERONE, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.GONZALES,S.HARDWICK,S.MASLEN,M.SKEHEL,E.HOLMQVIST,J.VOGEL, AUTHOR 2 A.BATEMAN,B.LUISI,R.BROADHURST REVDAT 5 19-JUN-24 5NBB 1 REMARK REVDAT 4 08-MAY-19 5NBB 1 REMARK REVDAT 3 30-AUG-17 5NBB 1 REMARK REVDAT 2 31-MAY-17 5NBB 1 TITLE REVDAT 1 03-MAY-17 5NBB 0 JRNL AUTH G.M.GONZALEZ,S.W.HARDWICK,S.L.MASLEN,J.M.SKEHEL,E.HOLMQVIST, JRNL AUTH 2 J.VOGEL,A.BATEMAN,B.F.LUISI,R.W.BROADHURST JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI PROQ RNA-BINDING PROTEIN. JRNL REF RNA V. 23 696 2017 JRNL REFN ESSN 1469-9001 JRNL PMID 28193673 JRNL DOI 10.1261/RNA.060343.116 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003822. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM TCEP, REMARK 210 0.0025 % 3,3,3- REMARK 210 TRIMETHYLSILYLPROPIONATE, 90% REMARK 210 H2O/10% D2O; 20 MM SODIUM REMARK 210 CHLORIDE, 100 MM SODIUM REMARK 210 PHOSPHATE, 1 MM TCEP, 0.0025 % 3, REMARK 210 3,3-TRIMETHYLSILYLPROPIONATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D CBCA(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 PHE A 232 CE1 PHE A 232 CZ 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 182 147.71 69.25 REMARK 500 1 SER A 184 -72.35 -108.17 REMARK 500 1 LEU A 186 -179.18 -171.21 REMARK 500 1 ALA A 191 126.11 75.30 REMARK 500 1 LEU A 192 -149.02 -159.33 REMARK 500 1 LYS A 195 99.21 60.37 REMARK 500 1 GLN A 198 -27.88 73.76 REMARK 500 1 MET A 201 -57.79 -146.91 REMARK 500 1 ASP A 202 136.22 108.39 REMARK 500 1 THR A 209 -160.78 -108.14 REMARK 500 1 ASP A 211 -19.75 -161.17 REMARK 500 1 MET A 221 -163.12 -115.12 REMARK 500 1 LEU A 223 -44.99 176.20 REMARK 500 1 ILE A 224 -97.89 34.28 REMARK 500 1 VAL A 225 -158.01 160.42 REMARK 500 2 ASP A 182 142.83 72.58 REMARK 500 2 SER A 184 -78.23 -125.44 REMARK 500 2 ALA A 191 128.71 75.47 REMARK 500 2 LEU A 192 -151.03 -150.42 REMARK 500 2 GLN A 198 -23.92 77.89 REMARK 500 2 MET A 201 -85.16 -91.67 REMARK 500 2 ASP A 202 110.21 146.75 REMARK 500 2 THR A 209 -160.78 -111.86 REMARK 500 2 ASP A 211 -25.84 -163.57 REMARK 500 2 SER A 222 117.75 70.89 REMARK 500 2 LEU A 223 -40.32 162.77 REMARK 500 2 ILE A 224 -92.51 32.99 REMARK 500 2 VAL A 225 -158.86 160.71 REMARK 500 2 HIS A 229 -25.02 -140.59 REMARK 500 3 ASP A 182 143.70 73.10 REMARK 500 3 SER A 184 -74.44 -124.36 REMARK 500 3 ALA A 191 124.94 71.99 REMARK 500 3 LEU A 192 -149.99 -145.86 REMARK 500 3 GLN A 198 -18.30 73.82 REMARK 500 3 MET A 201 -76.99 -107.02 REMARK 500 3 ASP A 202 149.71 162.04 REMARK 500 3 THR A 209 -160.86 -115.39 REMARK 500 3 ASP A 211 -22.04 -164.61 REMARK 500 3 MET A 221 -159.25 -111.39 REMARK 500 3 LEU A 223 -38.66 162.97 REMARK 500 3 ILE A 224 -91.35 34.22 REMARK 500 3 VAL A 225 -156.41 160.09 REMARK 500 3 HIS A 229 -22.24 -140.02 REMARK 500 4 ASP A 182 157.47 69.43 REMARK 500 4 SER A 184 -79.48 -94.94 REMARK 500 4 ALA A 191 128.46 77.68 REMARK 500 4 LEU A 192 -150.02 -156.22 REMARK 500 4 LYS A 195 97.45 62.20 REMARK 500 4 GLN A 198 -31.58 73.88 REMARK 500 4 MET A 201 -66.12 -154.03 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34111 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE ESCHERICHIA COLI PROQ RNA REMARK 900 BINDING PROTEIN DBREF 5NBB A 180 232 UNP P45577 PROQ_ECOLI 180 232 SEQRES 1 A 53 VAL SER ASP ILE SER ALA LEU THR VAL GLY GLN ALA LEU SEQRES 2 A 53 LYS VAL LYS ALA GLY GLN ASN ALA MET ASP ALA THR VAL SEQRES 3 A 53 LEU GLU ILE THR LYS ASP GLY VAL ARG VAL GLN LEU ASN SEQRES 4 A 53 SER GLY MET SER LEU ILE VAL ARG ALA GLU HIS LEU VAL SEQRES 5 A 53 PHE SHEET 1 AA1 2 ALA A 203 ILE A 208 0 SHEET 2 AA1 2 VAL A 213 LEU A 217 -1 O ARG A 214 N GLU A 207 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1