HEADER HYDROLASE 02-MAR-17 5NBO TITLE BACTEROIDES OVATUS MIXED LINKAGE GLUCAN PUL (MLGUL) GH16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 16; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 28116; SOURCE 4 GENE: BACOVA_02741; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, GH16, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.R.HEMSWORTH,K.TAMURA,G.DEJEAN,T.E.ROGERS,N.A.PUDLO,K.URS,N.JAIN, AUTHOR 2 E.C.MARTENS,H.BRUMER,G.J.DAVIES REVDAT 2 17-JAN-24 5NBO 1 REMARK REVDAT 1 25-OCT-17 5NBO 0 JRNL AUTH K.TAMURA,G.R.HEMSWORTH,G.DEJEAN,T.E.ROGERS,N.A.PUDLO,K.URS, JRNL AUTH 2 N.JAIN,G.J.DAVIES,E.C.MARTENS,H.BRUMER JRNL TITL MOLECULAR MECHANISM BY WHICH PROMINENT HUMAN GUT JRNL TITL 2 BACTEROIDETES UTILIZE MIXED-LINKAGE BETA-GLUCANS, MAJOR JRNL TITL 3 HEALTH-PROMOTING CEREAL POLYSACCHARIDES. JRNL REF CELL REP V. 21 417 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 29020628 JRNL DOI 10.1016/J.CELREP.2017.09.049 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 43072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3868 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3382 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5229 ; 1.830 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7880 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 7.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;39.716 ;25.567 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;12.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.787 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4368 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1894 ; 1.565 ; 1.675 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1893 ; 1.547 ; 1.673 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 2.194 ; 2.498 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2365 ; 2.203 ; 2.499 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 2.675 ; 1.952 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1974 ; 2.675 ; 1.952 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2866 ; 4.171 ; 2.810 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4350 ; 5.226 ;20.184 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4351 ; 5.225 ;20.189 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45483 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6 200 MM LICL2 15-25% REMARK 280 PEG-6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.73300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.40050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.73300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.40050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 GLU A 29 REMARK 465 GLU A 30 REMARK 465 ASN A 31 REMARK 465 PRO A 32 REMARK 465 GLN A 33 REMARK 465 ASP A 34 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 HIS B 19 REMARK 465 MET B 20 REMARK 465 SER B 21 REMARK 465 ASP B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 GLY B 25 REMARK 465 THR B 26 REMARK 465 GLU B 27 REMARK 465 PRO B 28 REMARK 465 GLU B 29 REMARK 465 GLU B 30 REMARK 465 ASN B 31 REMARK 465 PRO B 32 REMARK 465 GLN B 33 REMARK 465 ASP B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LEU B 36 CG CD1 CD2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 427 O HOH A 427 2555 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 203 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 133 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 257 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -50.44 -132.03 REMARK 500 ASP A 159 42.06 -141.97 REMARK 500 GLN B 191 58.33 -115.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 DBREF 5NBO A 21 271 UNP A7LY25 A7LY25_BACO1 21 271 DBREF 5NBO B 21 271 UNP A7LY25 A7LY25_BACO1 21 271 SEQADV 5NBO MET A 0 UNP A7LY25 INITIATING METHIONINE SEQADV 5NBO GLY A 1 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER A 2 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER A 3 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 4 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 5 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 6 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 7 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 8 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 9 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER A 10 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER A 11 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO GLY A 12 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO LEU A 13 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO VAL A 14 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO PRO A 15 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO ARG A 16 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO GLY A 17 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER A 18 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS A 19 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO MET A 20 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO MET B 0 UNP A7LY25 INITIATING METHIONINE SEQADV 5NBO GLY B 1 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER B 2 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER B 3 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 4 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 5 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 6 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 7 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 8 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 9 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER B 10 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER B 11 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO GLY B 12 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO LEU B 13 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO VAL B 14 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO PRO B 15 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO ARG B 16 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO GLY B 17 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO SER B 18 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO HIS B 19 UNP A7LY25 EXPRESSION TAG SEQADV 5NBO MET B 20 UNP A7LY25 EXPRESSION TAG SEQRES 1 A 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 272 LEU VAL PRO ARG GLY SER HIS MET SER ASP SER VAL GLY SEQRES 3 A 272 THR GLU PRO GLU GLU ASN PRO GLN ASP ILE LEU PHE LYS SEQRES 4 A 272 ASP ASP PHE ASN PHE PHE ASP GLU LYS VAL TRP THR LYS SEQRES 5 A 272 GLU THR HIS GLU PRO GLY TRP THR ASN GLN GLU LEU GLN SEQRES 6 A 272 ALA TYR ASP ALA ALA HIS VAL SER VAL GLY LYS ASP GLY SEQRES 7 A 272 ASP LYS SER VAL LEU ILE LEU THR ALA GLU ARG LYS GLY SEQRES 8 A 272 ASN LYS ILE TYR SER GLY ARG ILE ASN SER LYS GLY LYS SEQRES 9 A 272 LYS SER PHE LYS TYR ARG LYS ILE GLU ALA SER ILE LYS SEQRES 10 A 272 LEU PRO LYS THR ASN GLY GLY LEU TRP PRO ALA PHE TRP SEQRES 11 A 272 MET MET GLY ASP ASN ASP LYS GLN TRP PRO ALA CYS GLY SEQRES 12 A 272 GLU ILE ASP ILE MET GLU MET GLY GLU GLN SER GLY MET SEQRES 13 A 272 ALA ALA GLY ASP SER GLU LYS GLN VAL ASN THR ALA ILE SEQRES 14 A 272 HIS TYR GLY PRO SER ALA ALA ALA HIS GLU GLN GLN TYR SEQRES 15 A 272 TYR LYS ALA ASN VAL ALA ASN SER LEU GLN ASP GLY ASN SEQRES 16 A 272 TYR HIS THR TYR SER LEU ASP TRP ASP GLU ASN ASN LEU SEQRES 17 A 272 THR ILE SER ILE ASP ASN VAL LYS PHE HIS THR PHE ASP SEQRES 18 A 272 ILE SER SER ASN THR TYR PHE HIS ASP ASN PHE TYR ILE SEQRES 19 A 272 LEU PHE ASN LEU ALA VAL GLY GLY ALA PHE THR GLY ILE SEQRES 20 A 272 THR ASP ILE ASN LYS LEU THR GLY LEU LYS ASP GLY GLN SEQRES 21 A 272 LYS VAL ASN MET TYR ILE ASP TRP VAL LYS ILE LEU SEQRES 1 B 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 272 LEU VAL PRO ARG GLY SER HIS MET SER ASP SER VAL GLY SEQRES 3 B 272 THR GLU PRO GLU GLU ASN PRO GLN ASP ILE LEU PHE LYS SEQRES 4 B 272 ASP ASP PHE ASN PHE PHE ASP GLU LYS VAL TRP THR LYS SEQRES 5 B 272 GLU THR HIS GLU PRO GLY TRP THR ASN GLN GLU LEU GLN SEQRES 6 B 272 ALA TYR ASP ALA ALA HIS VAL SER VAL GLY LYS ASP GLY SEQRES 7 B 272 ASP LYS SER VAL LEU ILE LEU THR ALA GLU ARG LYS GLY SEQRES 8 B 272 ASN LYS ILE TYR SER GLY ARG ILE ASN SER LYS GLY LYS SEQRES 9 B 272 LYS SER PHE LYS TYR ARG LYS ILE GLU ALA SER ILE LYS SEQRES 10 B 272 LEU PRO LYS THR ASN GLY GLY LEU TRP PRO ALA PHE TRP SEQRES 11 B 272 MET MET GLY ASP ASN ASP LYS GLN TRP PRO ALA CYS GLY SEQRES 12 B 272 GLU ILE ASP ILE MET GLU MET GLY GLU GLN SER GLY MET SEQRES 13 B 272 ALA ALA GLY ASP SER GLU LYS GLN VAL ASN THR ALA ILE SEQRES 14 B 272 HIS TYR GLY PRO SER ALA ALA ALA HIS GLU GLN GLN TYR SEQRES 15 B 272 TYR LYS ALA ASN VAL ALA ASN SER LEU GLN ASP GLY ASN SEQRES 16 B 272 TYR HIS THR TYR SER LEU ASP TRP ASP GLU ASN ASN LEU SEQRES 17 B 272 THR ILE SER ILE ASP ASN VAL LYS PHE HIS THR PHE ASP SEQRES 18 B 272 ILE SER SER ASN THR TYR PHE HIS ASP ASN PHE TYR ILE SEQRES 19 B 272 LEU PHE ASN LEU ALA VAL GLY GLY ALA PHE THR GLY ILE SEQRES 20 B 272 THR ASP ILE ASN LYS LEU THR GLY LEU LYS ASP GLY GLN SEQRES 21 B 272 LYS VAL ASN MET TYR ILE ASP TRP VAL LYS ILE LEU HET EDO B 301 4 HET EDO B 302 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *353(H2 O) HELIX 1 AA1 GLU A 151 ALA A 157 1 7 HELIX 2 AA2 SER A 173 ALA A 176 5 4 HELIX 3 AA3 GLY A 241 GLY A 245 5 5 HELIX 4 AA4 ASP A 248 LEU A 252 5 5 HELIX 5 AA5 GLU B 151 ALA B 157 1 7 HELIX 6 AA6 ASN B 224 HIS B 228 5 5 HELIX 7 AA7 GLY B 241 GLY B 245 5 5 HELIX 8 AA8 ASP B 248 LEU B 252 5 5 SHEET 1 AA1 4 PHE A 37 ASP A 39 0 SHEET 2 AA1 4 LYS A 260 LEU A 271 -1 O ILE A 270 N PHE A 37 SHEET 3 AA1 4 LYS A 79 LYS A 89 -1 N ALA A 86 O VAL A 261 SHEET 4 AA1 4 VAL A 71 ASP A 76 -1 N SER A 72 O ILE A 83 SHEET 1 AA2 8 ALA A 65 TYR A 66 0 SHEET 2 AA2 8 LYS A 92 SER A 95 1 O SER A 95 N ALA A 65 SHEET 3 AA2 8 LYS A 79 LYS A 89 -1 N LYS A 89 O LYS A 92 SHEET 4 AA2 8 LYS A 260 LEU A 271 -1 O VAL A 261 N ALA A 86 SHEET 5 AA2 8 LYS A 110 LYS A 116 -1 N LYS A 116 O TYR A 264 SHEET 6 AA2 8 HIS A 196 TRP A 202 -1 O LEU A 200 N ILE A 111 SHEET 7 AA2 8 ASN A 206 ILE A 211 -1 O THR A 208 N ASP A 201 SHEET 8 AA2 8 VAL A 214 ASP A 220 -1 O PHE A 216 N ILE A 209 SHEET 1 AA314 THR A 50 LYS A 51 0 SHEET 2 AA314 ARG A 97 ASN A 99 -1 O ASN A 99 N THR A 50 SHEET 3 AA314 PHE A 231 VAL A 239 -1 O PHE A 235 N ILE A 98 SHEET 4 AA314 LEU A 124 GLY A 132 -1 N TRP A 129 O LEU A 234 SHEET 5 AA314 GLU A 143 GLU A 148 -1 O ILE A 144 N MET A 130 SHEET 6 AA314 GLN A 163 TYR A 170 -1 O ALA A 167 N ASP A 145 SHEET 7 AA314 GLU A 178 ASN A 185 -1 O GLU A 178 N TYR A 170 SHEET 8 AA314 GLU B 178 ASN B 185 -1 O TYR B 181 N TYR A 181 SHEET 9 AA314 GLN B 163 TYR B 170 -1 N TYR B 170 O GLU B 178 SHEET 10 AA314 GLU B 143 GLU B 148 -1 N ASP B 145 O ALA B 167 SHEET 11 AA314 LEU B 124 GLY B 132 -1 N MET B 130 O ILE B 144 SHEET 12 AA314 PHE B 231 VAL B 239 -1 O LEU B 234 N TRP B 129 SHEET 13 AA314 ARG B 97 ASN B 99 -1 N ILE B 98 O PHE B 235 SHEET 14 AA314 THR B 50 LYS B 51 -1 N THR B 50 O ASN B 99 SHEET 1 AA412 SER A 105 PHE A 106 0 SHEET 2 AA412 PHE A 231 VAL A 239 -1 O PHE A 231 N PHE A 106 SHEET 3 AA412 LEU A 124 GLY A 132 -1 N TRP A 129 O LEU A 234 SHEET 4 AA412 GLU A 143 GLU A 148 -1 O ILE A 144 N MET A 130 SHEET 5 AA412 GLN A 163 TYR A 170 -1 O ALA A 167 N ASP A 145 SHEET 6 AA412 GLU A 178 ASN A 185 -1 O GLU A 178 N TYR A 170 SHEET 7 AA412 GLU B 178 ASN B 185 -1 O TYR B 181 N TYR A 181 SHEET 8 AA412 GLN B 163 TYR B 170 -1 N TYR B 170 O GLU B 178 SHEET 9 AA412 GLU B 143 GLU B 148 -1 N ASP B 145 O ALA B 167 SHEET 10 AA412 LEU B 124 GLY B 132 -1 N MET B 130 O ILE B 144 SHEET 11 AA412 PHE B 231 VAL B 239 -1 O LEU B 234 N TRP B 129 SHEET 12 AA412 SER B 105 PHE B 106 -1 N PHE B 106 O PHE B 231 SHEET 1 AA5 4 PHE B 37 ASP B 39 0 SHEET 2 AA5 4 LYS B 260 LEU B 271 -1 O VAL B 268 N ASP B 39 SHEET 3 AA5 4 LYS B 79 LYS B 89 -1 N ALA B 86 O VAL B 261 SHEET 4 AA5 4 VAL B 71 ASP B 76 -1 N SER B 72 O ILE B 83 SHEET 1 AA6 8 ALA B 65 TYR B 66 0 SHEET 2 AA6 8 LYS B 92 SER B 95 1 O ILE B 93 N ALA B 65 SHEET 3 AA6 8 LYS B 79 LYS B 89 -1 N LYS B 89 O LYS B 92 SHEET 4 AA6 8 LYS B 260 LEU B 271 -1 O VAL B 261 N ALA B 86 SHEET 5 AA6 8 LYS B 110 LYS B 116 -1 N GLU B 112 O LYS B 269 SHEET 6 AA6 8 HIS B 196 TRP B 202 -1 O LEU B 200 N ILE B 111 SHEET 7 AA6 8 ASN B 206 ILE B 211 -1 O THR B 208 N ASP B 201 SHEET 8 AA6 8 VAL B 214 ASP B 220 -1 O PHE B 216 N ILE B 209 CISPEP 1 TRP A 138 PRO A 139 0 4.19 CISPEP 2 TRP B 138 PRO B 139 0 8.92 SITE 1 AC1 10 GLN A 180 HIS A 217 PHE A 219 HOH A 398 SITE 2 AC1 10 GLN B 180 HIS B 217 THR B 218 PHE B 219 SITE 3 AC1 10 HOH B 459 HOH B 488 SITE 1 AC2 8 TRP B 125 ALA B 127 TRP B 129 GLU B 143 SITE 2 AC2 8 GLU B 148 HOH B 402 HOH B 467 HOH B 477 CRYST1 167.466 60.801 49.385 90.00 94.49 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005971 0.000000 0.000469 0.00000 SCALE2 0.000000 0.016447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020312 0.00000