HEADER TRANSFERASE 02-MAR-17 5NBR OBSLTE 26-DEC-18 5NBR 6QAI TITLE 2-DESOXIRIBOSYLTRANSFERASE FROM LEISHMANIA MEXICANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEOXYRIBOSYLTRANSFERASE, ENZYMATIC SYNTHESIS, OLIGOMERIC ASSEMBLY, KEYWDS 2 PURINE NUCLEOSIDE ANALOGUES, PROTEIN CRYSTALLOGRAPHY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CRESPO,J.M.MANCHENO REVDAT 3 26-DEC-18 5NBR 1 OBSLTE REVDAT 2 29-NOV-17 5NBR 1 JRNL REVDAT 1 27-SEP-17 5NBR 0 JRNL AUTH N.CRESPO,P.A.SANCHEZ-MURCIA,F.GAGO,J.CEJUDO-SANCHES, JRNL AUTH 2 M.A.GALMES,J.FERNANDEZ-LUCAS,J.M.MANCHENO JRNL TITL 2'-DEOXYRIBOSYLTRANSFERASE FROM LEISHMANIA MEXICANA, AN JRNL TITL 2 EFFICIENT BIOCATALYST FOR ONE-POT, ONE-STEP SYNTHESIS OF JRNL TITL 3 NUCLEOSIDES FROM POORLY SOLUBLE PURINE BASES. JRNL REF APPL. MICROBIOL. BIOTECHNOL. V. 101 7187 2017 JRNL REFN ESSN 1432-0614 JRNL PMID 28785897 JRNL DOI 10.1007/S00253-017-8450-Y REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 33853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8636 - 3.9996 0.99 2406 147 0.1414 0.1672 REMARK 3 2 3.9996 - 3.1750 0.99 2340 142 0.1529 0.2116 REMARK 3 3 3.1750 - 2.7738 0.99 2308 147 0.1826 0.2253 REMARK 3 4 2.7738 - 2.5202 0.98 2305 150 0.1844 0.1977 REMARK 3 5 2.5202 - 2.3396 0.98 2288 144 0.1717 0.1886 REMARK 3 6 2.3396 - 2.2017 0.98 2247 140 0.1748 0.2178 REMARK 3 7 2.2017 - 2.0914 0.98 2292 142 0.1748 0.2276 REMARK 3 8 2.0914 - 2.0004 0.97 2245 150 0.1909 0.2321 REMARK 3 9 2.0004 - 1.9234 0.97 2249 134 0.1979 0.2480 REMARK 3 10 1.9234 - 1.8570 0.97 2252 143 0.1903 0.2080 REMARK 3 11 1.8570 - 1.7989 0.96 2248 146 0.2011 0.2393 REMARK 3 12 1.7989 - 1.7475 0.96 2244 135 0.2159 0.2631 REMARK 3 13 1.7475 - 1.7015 0.96 2223 143 0.2186 0.2425 REMARK 3 14 1.7015 - 1.6600 0.96 2206 137 0.2416 0.2910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2447 REMARK 3 ANGLE : 0.788 3324 REMARK 3 CHIRALITY : 0.055 367 REMARK 3 PLANARITY : 0.005 437 REMARK 3 DIHEDRAL : 14.559 1458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5041 -0.8205 79.1143 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1276 REMARK 3 T33: 0.1890 T12: 0.0099 REMARK 3 T13: -0.0257 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.3953 L22: 7.1202 REMARK 3 L33: 3.3685 L12: 0.7784 REMARK 3 L13: -0.8366 L23: -0.5128 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: 0.1962 S13: 0.2324 REMARK 3 S21: -0.1981 S22: -0.0408 S23: 0.1180 REMARK 3 S31: -0.2501 S32: -0.0896 S33: -0.0323 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7864 0.1146 85.0640 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.2340 REMARK 3 T33: 0.2500 T12: 0.1071 REMARK 3 T13: -0.0297 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 5.3947 L22: 2.5742 REMARK 3 L33: 3.5474 L12: -1.6676 REMARK 3 L13: -1.2953 L23: 1.8291 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.0252 S13: 0.3449 REMARK 3 S21: -0.1632 S22: -0.0484 S23: 0.2701 REMARK 3 S31: -0.6862 S32: -0.8446 S33: -0.0549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4508 -4.7564 96.7752 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.3241 REMARK 3 T33: 0.2224 T12: -0.0085 REMARK 3 T13: -0.0241 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 1.2306 L22: 1.6238 REMARK 3 L33: 3.8239 L12: -0.1117 REMARK 3 L13: -0.3896 L23: 0.5549 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: -0.5490 S13: 0.0392 REMARK 3 S21: 0.1935 S22: 0.1492 S23: -0.2204 REMARK 3 S31: -0.1154 S32: 0.6354 S33: -0.1295 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6550 -18.1573 81.4639 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.1096 REMARK 3 T33: 0.3146 T12: 0.0154 REMARK 3 T13: -0.0351 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 3.1847 L22: 5.2287 REMARK 3 L33: 8.7910 L12: -0.3392 REMARK 3 L13: -4.4777 L23: -3.0913 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.0284 S13: -0.4664 REMARK 3 S21: -0.3235 S22: 0.0473 S23: 0.4268 REMARK 3 S31: 0.6595 S32: 0.2635 S33: 0.0231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0533 -0.9485 118.2407 REMARK 3 T TENSOR REMARK 3 T11: 0.5210 T22: 0.8602 REMARK 3 T33: 0.2974 T12: -0.0528 REMARK 3 T13: 0.0926 T23: -0.0905 REMARK 3 L TENSOR REMARK 3 L11: 1.4435 L22: 3.1008 REMARK 3 L33: 1.8081 L12: -0.0613 REMARK 3 L13: -1.3099 L23: -1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.1397 S12: -0.9418 S13: -0.0538 REMARK 3 S21: 0.8141 S22: -0.0163 S23: 0.2287 REMARK 3 S31: 0.2481 S32: -0.2755 S33: 0.0585 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4035 -11.6477 111.8739 REMARK 3 T TENSOR REMARK 3 T11: 0.7575 T22: 0.6253 REMARK 3 T33: 0.2548 T12: -0.1148 REMARK 3 T13: 0.0225 T23: 0.0974 REMARK 3 L TENSOR REMARK 3 L11: 3.9129 L22: 1.8620 REMARK 3 L33: 4.8330 L12: -0.6620 REMARK 3 L13: -3.1686 L23: 2.5684 REMARK 3 S TENSOR REMARK 3 S11: 0.2625 S12: -1.3430 S13: -0.6835 REMARK 3 S21: 1.5564 S22: -0.0304 S23: -0.0484 REMARK 3 S31: 1.1255 S32: 0.4704 S33: 0.1818 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7345 4.9789 103.1521 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.4305 REMARK 3 T33: 0.2607 T12: 0.0578 REMARK 3 T13: 0.0628 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 1.9381 L22: 2.9423 REMARK 3 L33: 4.5824 L12: 0.0392 REMARK 3 L13: 0.7161 L23: 1.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: -0.6023 S13: 0.3089 REMARK 3 S21: 0.0704 S22: -0.2872 S23: 0.2664 REMARK 3 S31: -0.8364 S32: -0.6805 S33: -0.1598 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 39.852 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : 0.64500 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2A0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.10450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.10450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 155 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 3 REMARK 465 THR B 154 REMARK 465 PRO B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 116 O HOH B 301 1.98 REMARK 500 OD2 ASP B 136 O HOH B 302 2.04 REMARK 500 OE2 GLU B 21 O HOH B 303 2.05 REMARK 500 OG SER B 112 O HOH B 304 2.12 REMARK 500 OE2 GLU A 108 O HOH A 301 2.16 REMARK 500 OD2 ASP A 43 O HOH A 302 2.17 REMARK 500 NZ LYS B 5 O HIS B 152 2.18 REMARK 500 O TYR A 110 O HOH A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 376 O HOH A 376 2557 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 80 CB CYS B 80 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 75.63 -152.52 REMARK 500 ALA A 3 58.90 -153.12 REMARK 500 ASP A 43 -53.41 -2.78 REMARK 500 ILE A 45 -74.96 -101.35 REMARK 500 SER A 75 -162.57 -168.52 REMARK 500 LYS B 34 30.14 -141.32 REMARK 500 ARG B 74 -14.77 69.36 REMARK 500 SER B 75 -155.98 -148.87 REMARK 500 HIS B 152 35.33 -144.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 DBREF 5NBR A 1 155 UNP E9AWJ0 E9AWJ0_LEIMU 1 155 DBREF 5NBR B 1 155 UNP E9AWJ0 E9AWJ0_LEIMU 1 155 SEQADV 5NBR HIS A 0 UNP E9AWJ0 EXPRESSION TAG SEQADV 5NBR HIS B 0 UNP E9AWJ0 EXPRESSION TAG SEQRES 1 A 156 HIS MET PRO ALA PRO LYS THR ILE TYR ILE ALA GLY PRO SEQRES 2 A 156 ALA VAL PHE HIS PRO ASP ASN GLY GLU ALA TYR TYR ASN SEQRES 3 A 156 ASN VAL ARG ALA LEU MET LYS GLY LYS ASP VAL VAL PRO SEQRES 4 A 156 LEU ILE PRO THR ASP ASN ILE ALA THR GLY ALA VAL ASN SEQRES 5 A 156 ILE ARG ASN LYS ASN ILE ASP MET ILE ARG ALA CYS ASP SEQRES 6 A 156 ALA ILE ILE ALA ASP LEU SER PRO PHE ARG SER LYS GLU SEQRES 7 A 156 PRO ASP CYS GLY THR ALA PHE GLU LEU GLY TYR ALA ALA SEQRES 8 A 156 ALA LEU GLY LYS VAL LEU LEU THR PHE SER THR ASP THR SEQRES 9 A 156 ARG PRO MET VAL GLU LYS TYR GLY SER GLU MET ALA ASP SEQRES 10 A 156 GLY LEU SER VAL GLU ASN PHE GLY LEU PRO PHE ASN LEU SEQRES 11 A 156 MET LEU HIS ASP GLY THR ASP VAL PHE ASP SER PHE GLU SEQRES 12 A 156 ALA ALA PHE ALA TYR PHE VAL GLU HIS HIS LEU THR PRO SEQRES 1 B 156 HIS MET PRO ALA PRO LYS THR ILE TYR ILE ALA GLY PRO SEQRES 2 B 156 ALA VAL PHE HIS PRO ASP ASN GLY GLU ALA TYR TYR ASN SEQRES 3 B 156 ASN VAL ARG ALA LEU MET LYS GLY LYS ASP VAL VAL PRO SEQRES 4 B 156 LEU ILE PRO THR ASP ASN ILE ALA THR GLY ALA VAL ASN SEQRES 5 B 156 ILE ARG ASN LYS ASN ILE ASP MET ILE ARG ALA CYS ASP SEQRES 6 B 156 ALA ILE ILE ALA ASP LEU SER PRO PHE ARG SER LYS GLU SEQRES 7 B 156 PRO ASP CYS GLY THR ALA PHE GLU LEU GLY TYR ALA ALA SEQRES 8 B 156 ALA LEU GLY LYS VAL LEU LEU THR PHE SER THR ASP THR SEQRES 9 B 156 ARG PRO MET VAL GLU LYS TYR GLY SER GLU MET ALA ASP SEQRES 10 B 156 GLY LEU SER VAL GLU ASN PHE GLY LEU PRO PHE ASN LEU SEQRES 11 B 156 MET LEU HIS ASP GLY THR ASP VAL PHE ASP SER PHE GLU SEQRES 12 B 156 ALA ALA PHE ALA TYR PHE VAL GLU HIS HIS LEU THR PRO HET GOL A 201 6 HET GOL A 202 6 HET GOL B 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *250(H2 O) HELIX 1 AA1 GLY A 11 HIS A 16 5 6 HELIX 2 AA2 GLY A 20 LYS A 32 1 13 HELIX 3 AA3 GLY A 48 CYS A 63 1 16 HELIX 4 AA4 ASP A 79 GLY A 93 1 15 HELIX 5 AA5 PRO A 105 GLY A 111 1 7 HELIX 6 AA6 ASN A 128 HIS A 132 5 5 HELIX 7 AA7 SER A 140 LEU A 153 1 14 HELIX 8 AA8 GLY B 11 HIS B 16 5 6 HELIX 9 AA9 GLY B 20 LEU B 30 1 11 HELIX 10 AB1 GLY B 48 CYS B 63 1 16 HELIX 11 AB2 ASP B 79 LEU B 92 1 14 HELIX 12 AB3 PRO B 105 GLY B 111 1 7 HELIX 13 AB4 ASN B 128 HIS B 132 5 5 HELIX 14 AB5 SER B 140 HIS B 152 1 13 SHEET 1 AA1 4 VAL A 36 LEU A 39 0 SHEET 2 AA1 4 LYS A 5 ALA A 10 1 N ILE A 7 O LEU A 39 SHEET 3 AA1 4 ALA A 65 ASP A 69 1 O ALA A 65 N TYR A 8 SHEET 4 AA1 4 VAL A 95 PHE A 99 1 O LEU A 97 N ALA A 68 SHEET 1 AA2 2 MET A 114 ALA A 115 0 SHEET 2 AA2 2 LEU A 118 SER A 119 -1 O LEU A 118 N ALA A 115 SHEET 1 AA3 4 VAL B 36 LEU B 39 0 SHEET 2 AA3 4 LYS B 5 ALA B 10 1 N ILE B 9 O LEU B 39 SHEET 3 AA3 4 ALA B 65 ASP B 69 1 O ASP B 69 N ALA B 10 SHEET 4 AA3 4 VAL B 95 PHE B 99 1 O LEU B 97 N ALA B 68 SHEET 1 AA4 2 MET B 114 ALA B 115 0 SHEET 2 AA4 2 LEU B 118 SER B 119 -1 O LEU B 118 N ALA B 115 SITE 1 AC1 10 ALA A 10 GLY A 11 PHE A 15 ASP A 79 SITE 2 AC1 10 GLY A 81 THR A 82 GLU A 85 HOH A 315 SITE 3 AC1 10 ASN B 128 MET B 130 SITE 1 AC2 4 PRO A 4 ASP A 64 HOH A 322 HOH A 376 SITE 1 AC3 9 ASN A 128 ALA B 10 GLY B 11 PHE B 15 SITE 2 AC3 9 ASP B 79 GLY B 81 THR B 82 GLU B 85 SITE 3 AC3 9 HOH B 309 CRYST1 80.209 46.265 87.987 90.00 115.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012467 0.000000 0.005830 0.00000 SCALE2 0.000000 0.021615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012546 0.00000