HEADER TRANSFERASE 06-MAR-17 5NCZ TITLE MPI3KD IN COMPLEX WITH INH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT DELTA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PTDINS-3-KINASE SUBUNIT DELTA,PHOSPHATIDYLINOSITOL 4,5- COMPND 6 BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT DELTA,P110DELTA; COMPND 7 EC: 2.7.1.153; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3CD; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS MI3KD, INHIBITOR, COMPLEX PI3K, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PETERSEN REVDAT 2 05-JUL-17 5NCZ 1 JRNL REVDAT 1 21-JUN-17 5NCZ 0 JRNL AUTH M.W.D.PERRY,K.BJORHALL,B.BONN,J.CARLSSON,Y.CHEN,A.ERIKSSON, JRNL AUTH 2 L.FREDLUND,H.HAO,N.S.HOLDEN,K.KARABELAS,H.LINDMARK,F.LIU, JRNL AUTH 3 N.PEMBERTON,J.PETERSEN,S.RODRIGO BLOMQVIST,R.W.SMITH, JRNL AUTH 4 T.SVENSSON,I.TERSTIEGE,C.TYRCHAN,W.YANG,S.ZHAO,L.OSTER JRNL TITL DESIGN AND SYNTHESIS OF SOLUBLE AND CELL-PERMEABLE PI3K JRNL TITL 2 DELTA INHIBITORS FOR LONG-ACTING INHALED ADMINISTRATION. JRNL REF J. MED. CHEM. V. 60 5057 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28520415 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00401 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 73956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3715 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.08 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5328 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2420 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5073 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.79 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 255 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11250 REMARK 3 B22 (A**2) : 0.47110 REMARK 3 B33 (A**2) : -0.58350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.169 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.153 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.171 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.156 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6880 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9280 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2436 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 169 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 985 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6880 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 856 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7981 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 42.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: INTERNAL START MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% EDO_P8K, 100MM MORPHEUS BUFFER 2 REMARK 280 PH 7.5, 10% MORPHEUS CARBOXYLIC ACIDS, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.82500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.82500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 ARG A 108 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 TRP A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 PRO A 231 REMARK 465 LEU A 232 REMARK 465 VAL A 233 REMARK 465 GLU A 234 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 GLN A 295 REMARK 465 VAL A 296 REMARK 465 GLN A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 ASP A 336 REMARK 465 GLU A 337 REMARK 465 ARG A 338 REMARK 465 CYS A 366 REMARK 465 SER A 367 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ALA A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 LYS A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 PRO A 480 REMARK 465 HIS A 481 REMARK 465 GLY A 501 REMARK 465 GLU A 502 REMARK 465 ARG A 503 REMARK 465 GLY A 504 REMARK 465 ARG A 505 REMARK 465 ILE A 506 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 LYS A 922 REMARK 465 PHE A 923 REMARK 465 GLY A 924 REMARK 465 ILE A 925 REMARK 465 ASN A 926 REMARK 465 ARG A 927 REMARK 465 GLU A 928 REMARK 465 LYS A 1028 REMARK 465 THR A 1029 REMARK 465 LYS A 1030 REMARK 465 VAL A 1031 REMARK 465 ASN A 1032 REMARK 465 TRP A 1033 REMARK 465 LEU A 1034 REMARK 465 ALA A 1035 REMARK 465 HIS A 1036 REMARK 465 ASN A 1037 REMARK 465 VAL A 1038 REMARK 465 SER A 1039 REMARK 465 LYS A 1040 REMARK 465 ASP A 1041 REMARK 465 ASN A 1042 REMARK 465 ARG A 1043 REMARK 465 GLN A 1044 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 452 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 745 CA CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 289 30.03 -99.25 REMARK 500 LEU A 319 85.56 -63.36 REMARK 500 ILE A 328 -76.44 -72.19 REMARK 500 LYS A 332 168.46 59.35 REMARK 500 ASP A 430 -2.09 71.89 REMARK 500 GLU A 508 -21.08 65.51 REMARK 500 GLU A 516 52.53 -97.86 REMARK 500 ASP A 736 108.66 -164.09 REMARK 500 GLU A 742 -98.25 -85.84 REMARK 500 LYS A 755 -112.64 39.07 REMARK 500 ASN A 949 72.44 -154.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8TN A 1105 DBREF 5NCZ A 106 1044 UNP O35904 PK3CD_MOUSE 106 1043 SEQADV 5NCZ ILE A 497 UNP O35904 HIS 497 CONFLICT SEQADV 5NCZ A UNP O35904 LEU 508 DELETION SEQADV 5NCZ A UNP O35904 GLN 509 DELETION SEQRES 1 A 936 GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE SER SEQRES 2 A 936 LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER LEU SEQRES 3 A 936 ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET ARG SEQRES 4 A 936 GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN LEU SEQRES 5 A 936 GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU GLN SEQRES 6 A 936 LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU LEU SEQRES 7 A 936 ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS PHE SEQRES 8 A 936 GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER THR SEQRES 9 A 936 LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU ARG SEQRES 10 A 936 LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU GLN SEQRES 11 A 936 PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS GLU SEQRES 12 A 936 TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN TYR SEQRES 13 A 936 ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS LEU SEQRES 14 A 936 THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG ASP SEQRES 15 A 936 GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO ARG SEQRES 16 A 936 ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER SER SEQRES 17 A 936 VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE GLU SEQRES 18 A 936 LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG MET SEQRES 19 A 936 LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN GLU SEQRES 20 A 936 MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN VAL SEQRES 21 A 936 CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE ASP SEQRES 22 A 936 ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU CYS SEQRES 23 A 936 PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS ALA SEQRES 24 A 936 ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS PRO SEQRES 25 A 936 ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS ASP SEQRES 26 A 936 GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP PRO SEQRES 27 A 936 SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO ALA SEQRES 28 A 936 GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA ALA SEQRES 29 A 936 ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS PRO SEQRES 30 A 936 VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU GLY SEQRES 31 A 936 ARG ILE GLY GLU ARG GLY ARG ILE THR GLU GLU GLU LEU SEQRES 32 A 936 ARG GLU ILE LEU GLU ARG ARG GLY SER GLY GLU LEU TYR SEQRES 33 A 936 GLU HIS GLU LYS ASP LEU VAL TRP LYS MET ARG HIS GLU SEQRES 34 A 936 VAL GLN GLU HIS PHE PRO GLU ALA LEU ALA ARG LEU LEU SEQRES 35 A 936 LEU VAL THR LYS TRP ASN LYS HIS GLU ASP VAL ALA GLN SEQRES 36 A 936 MET LEU TYR LEU LEU CYS SER TRP PRO GLU LEU PRO VAL SEQRES 37 A 936 LEU SER ALA LEU GLU LEU LEU ASP PHE SER PHE PRO ASP SEQRES 38 A 936 CYS TYR VAL GLY SER PHE ALA ILE LYS SER LEU ARG LYS SEQRES 39 A 936 LEU THR ASP ASP GLU LEU PHE GLN TYR LEU LEU GLN LEU SEQRES 40 A 936 VAL GLN VAL LEU LYS TYR GLU SER TYR LEU ASP CYS GLU SEQRES 41 A 936 LEU THR LYS PHE LEU LEU GLY ARG ALA LEU ALA ASN ARG SEQRES 42 A 936 LYS ILE GLY HIS PHE LEU PHE TRP HIS LEU ARG SER GLU SEQRES 43 A 936 MET HIS VAL PRO SER VAL ALA LEU ARG PHE GLY LEU ILE SEQRES 44 A 936 MET GLU ALA TYR CYS ARG GLY SER THR HIS HIS MET LYS SEQRES 45 A 936 VAL LEU MET LYS GLN GLY GLU ALA LEU SER LYS LEU LYS SEQRES 46 A 936 ALA LEU ASN ASP PHE VAL LYS VAL SER SER GLN LYS THR SEQRES 47 A 936 THR LYS PRO GLN THR LYS GLU MET MET HIS MET CYS MET SEQRES 48 A 936 ARG GLN GLU THR TYR MET GLU ALA LEU SER HIS LEU GLN SEQRES 49 A 936 SER PRO LEU ASP PRO SER THR LEU LEU GLU GLU VAL CYS SEQRES 50 A 936 VAL GLU GLN CYS THR PHE MET ASP SER LYS MET LYS PRO SEQRES 51 A 936 LEU TRP ILE MET TYR SER SER GLU GLU ALA GLY SER ALA SEQRES 52 A 936 GLY ASN VAL GLY ILE ILE PHE LYS ASN GLY ASP ASP LEU SEQRES 53 A 936 ARG GLN ASP MET LEU THR LEU GLN MET ILE GLN LEU MET SEQRES 54 A 936 ASP VAL LEU TRP LYS GLN GLU GLY LEU ASP LEU ARG MET SEQRES 55 A 936 THR PRO TYR GLY CYS LEU PRO THR GLY ASP ARG THR GLY SEQRES 56 A 936 LEU ILE GLU VAL VAL LEU HIS SER ASP THR ILE ALA ASN SEQRES 57 A 936 ILE GLN LEU ASN LYS SER ASN MET ALA ALA THR ALA ALA SEQRES 58 A 936 PHE ASN LYS ASP ALA LEU LEU ASN TRP LEU LYS SER LYS SEQRES 59 A 936 ASN PRO GLY GLU ALA LEU ASP ARG ALA ILE GLU GLU PHE SEQRES 60 A 936 THR LEU SER CYS ALA GLY TYR CYS VAL ALA THR TYR VAL SEQRES 61 A 936 LEU GLY ILE GLY ASP ARG HIS SER ASP ASN ILE MET ILE SEQRES 62 A 936 ARG GLU SER GLY GLN LEU PHE HIS ILE ASP PHE GLY HIS SEQRES 63 A 936 PHE LEU GLY ASN PHE LYS THR LYS PHE GLY ILE ASN ARG SEQRES 64 A 936 GLU ARG VAL PRO PHE ILE LEU THR TYR ASP PHE VAL HIS SEQRES 65 A 936 VAL ILE GLN GLN GLY LYS THR ASN ASN SER GLU LYS PHE SEQRES 66 A 936 GLU ARG PHE ARG GLY TYR CYS GLU ARG ALA TYR THR ILE SEQRES 67 A 936 LEU ARG ARG HIS GLY LEU LEU PHE LEU HIS LEU PHE ALA SEQRES 68 A 936 LEU MET ARG ALA ALA GLY LEU PRO GLU LEU SER CYS SER SEQRES 69 A 936 LYS ASP ILE GLN TYR LEU LYS ASP SER LEU ALA LEU GLY SEQRES 70 A 936 LYS THR GLU GLU GLU ALA LEU LYS HIS PHE ARG VAL LYS SEQRES 71 A 936 PHE ASN GLU ALA LEU ARG GLU SER TRP LYS THR LYS VAL SEQRES 72 A 936 ASN TRP LEU ALA HIS ASN VAL SER LYS ASP ASN ARG GLN HET EDO A1101 4 HET EDO A1102 4 HET EDO A1103 4 HET EDO A1104 4 HET 8TN A1105 33 HETNAM EDO 1,2-ETHANEDIOL HETNAM 8TN 4-AZANYL-6-[[(1~{S})-1-[6-[3-[(DIMETHYLAMINO) HETNAM 2 8TN METHYL]PHENYL]-3-METHYL-5-OXIDANYLIDENE-[1, HETNAM 3 8TN 3]THIAZOLO[3,2-A]PYRIDIN-7-YL]ETHYL]AMINO]PYRIMIDINE- HETNAM 4 8TN 5-CARBONITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 8TN C24 H25 N7 O S FORMUL 7 HOH *257(H2 O) HELIX 1 AA1 VAL A 109 GLY A 122 1 14 HELIX 2 AA2 LEU A 125 SER A 130 1 6 HELIX 3 AA3 ASP A 133 GLN A 156 1 24 HELIX 4 AA4 GLY A 158 PHE A 167 1 10 HELIX 5 AA5 MET A 212 PHE A 228 1 17 HELIX 6 AA6 GLN A 235 GLU A 237 5 3 HELIX 7 AA7 PRO A 255 HIS A 258 5 4 HELIX 8 AA8 PHE A 259 GLY A 269 1 11 HELIX 9 AA9 SER A 279 GLN A 289 1 11 HELIX 10 AB1 CYS A 382 LEU A 384 5 3 HELIX 11 AB2 ALA A 487 ARG A 496 1 10 HELIX 12 AB3 GLU A 508 LEU A 515 1 8 HELIX 13 AB4 TYR A 524 MET A 534 1 11 HELIX 14 AB5 MET A 534 PHE A 542 1 9 HELIX 15 AB6 ALA A 545 THR A 553 1 9 HELIX 16 AB7 LYS A 557 CYS A 569 1 13 HELIX 17 AB8 PRO A 575 LEU A 583 1 9 HELIX 18 AB9 ASP A 589 ARG A 601 1 13 HELIX 19 AC1 THR A 604 LEU A 619 1 16 HELIX 20 AC2 LYS A 620 GLU A 622 5 3 HELIX 21 AC3 CYS A 627 ASN A 640 1 14 HELIX 22 AC4 ASN A 640 SER A 653 1 14 HELIX 23 AC5 VAL A 657 SER A 675 1 19 HELIX 24 AC6 SER A 675 SER A 703 1 29 HELIX 25 AC7 THR A 707 ARG A 720 1 14 HELIX 26 AC8 GLN A 721 SER A 729 1 9 HELIX 27 AC9 VAL A 746 CYS A 749 5 4 HELIX 28 AD1 LEU A 784 GLU A 804 1 21 HELIX 29 AD2 ILE A 834 LEU A 839 1 6 HELIX 30 AD3 PHE A 850 LYS A 852 5 3 HELIX 31 AD4 ASP A 853 ASN A 863 1 11 HELIX 32 AD5 GLU A 866 LEU A 889 1 24 HELIX 33 AD6 HIS A 895 ASP A 897 5 3 HELIX 34 AD7 THR A 935 GLN A 943 1 9 HELIX 35 AD8 ASN A 949 HIS A 970 1 22 HELIX 36 AD9 HIS A 970 ARG A 982 1 13 HELIX 37 AE1 ALA A 983 GLY A 985 5 3 HELIX 38 AE2 CYS A 991 ALA A 1003 1 13 HELIX 39 AE3 THR A 1007 SER A 1026 1 20 SHEET 1 AA1 5 SER A 202 SER A 208 0 SHEET 2 AA1 5 ALA A 189 PHE A 196 -1 N VAL A 192 O PHE A 205 SHEET 3 AA1 5 HIS A 273 HIS A 278 1 O LEU A 274 N ASN A 193 SHEET 4 AA1 5 TYR A 239 VAL A 243 -1 N GLN A 242 O THR A 275 SHEET 5 AA1 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241 SHEET 1 AA2 4 VAL A 370 SER A 380 0 SHEET 2 AA2 4 PRO A 322 GLU A 329 -1 N PHE A 323 O PHE A 377 SHEET 3 AA2 4 ALA A 470 LEU A 475 -1 O VAL A 472 N GLU A 329 SHEET 4 AA2 4 GLY A 435 TYR A 440 -1 N ARG A 437 O ILE A 473 SHEET 1 AA3 3 GLU A 352 MET A 353 0 SHEET 2 AA3 3 LYS A 340 HIS A 349 -1 N HIS A 349 O GLU A 352 SHEET 3 AA3 3 VAL A 363 ASN A 364 -1 O VAL A 363 N LEU A 341 SHEET 1 AA4 5 VAL A 358 SER A 359 0 SHEET 2 AA4 5 LYS A 340 HIS A 349 -1 N ALA A 345 O VAL A 358 SHEET 3 AA4 5 ARG A 389 VAL A 397 -1 O CYS A 391 N GLY A 346 SHEET 4 AA4 5 CYS A 416 MET A 424 -1 O LEU A 423 N LEU A 390 SHEET 5 AA4 5 TRP A 442 PRO A 443 -1 O TRP A 442 N TRP A 420 SHEET 1 AA5 2 LEU A 731 SER A 733 0 SHEET 2 AA5 2 ASP A 736 LEU A 741 -1 O LEU A 741 N LEU A 731 SHEET 1 AA6 3 GLU A 743 VAL A 744 0 SHEET 2 AA6 3 LEU A 759 SER A 765 -1 O SER A 764 N GLU A 743 SHEET 3 AA6 3 THR A 750 PHE A 751 -1 N THR A 750 O TRP A 760 SHEET 1 AA7 5 GLU A 743 VAL A 744 0 SHEET 2 AA7 5 LEU A 759 SER A 765 -1 O SER A 764 N GLU A 743 SHEET 3 AA7 5 GLY A 769 ASN A 780 -1 O ILE A 776 N ILE A 761 SHEET 4 AA7 5 THR A 822 GLU A 826 -1 O ILE A 825 N ILE A 777 SHEET 5 AA7 5 CYS A 815 GLY A 819 -1 N LEU A 816 O LEU A 824 SHEET 1 AA8 3 SER A 831 THR A 833 0 SHEET 2 AA8 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832 SHEET 3 AA8 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900 CISPEP 1 THR A 434 GLY A 435 0 -0.80 SITE 1 AC1 5 ASP A 787 TYR A 813 ASP A 911 PHE A 912 SITE 2 AC1 5 8TN A1105 SITE 1 AC2 3 LYS A 779 ASP A 911 8TN A1105 SITE 1 AC3 7 PRO A 168 GLN A 170 ASP A 605 PHE A 609 SITE 2 AC3 7 ASN A 640 LYS A 642 HOH A1223 SITE 1 AC4 7 LEU A 120 TRP A 649 ARG A 652 GLY A 686 SITE 2 AC4 7 HOH A1210 HOH A1251 HOH A1259 SITE 1 AC5 17 PHE A 751 MET A 752 PRO A 758 TRP A 760 SITE 2 AC5 17 ILE A 777 TYR A 813 ILE A 825 GLU A 826 SITE 3 AC5 17 VAL A 827 VAL A 828 SER A 831 ASP A 832 SITE 4 AC5 17 MET A 900 ILE A 910 EDO A1101 EDO A1102 SITE 5 AC5 17 HOH A1391 CRYST1 141.650 64.840 116.600 90.00 103.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007060 0.000000 0.001712 0.00000 SCALE2 0.000000 0.015423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008825 0.00000