HEADER HYDROLASE 08-MAR-17 5NDB TITLE CRYSTAL STRUCTURE OF METALLO-BETA-LACTAMASE SPM-1 COMPLEXED WITH TITLE 2 CYCLOBUTANONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE IMP-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LACTAMASE SPM-1,METALLO-B-LACTAMASE,METALLO-BETA- COMPND 5 LACTAMASE BLASPM-1,SPM-1; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: SPM-1, BLA SPM-1, BLASPM-1, CCBH4851_00081, ICEPAESP_00028; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS LACTAMASE, INHIBITOR, CYCLOBUTANONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 17-JAN-24 5NDB 1 LINK REVDAT 2 25-APR-18 5NDB 1 JRNL REVDAT 1 17-JAN-18 5NDB 0 JRNL AUTH M.I.ABBOUD,M.KOSMOPOULOU,A.P.KRISMANICH,J.W.JOHNSON, JRNL AUTH 2 P.HINCHLIFFE,J.BREM,T.D.W.CLARIDGE,J.SPENCER,C.J.SCHOFIELD, JRNL AUTH 3 G.I.DMITRIENKO JRNL TITL CYCLOBUTANONE MIMICS OF INTERMEDIATES IN JRNL TITL 2 METALLO-BETA-LACTAMASE CATALYSIS. JRNL REF CHEMISTRY V. 24 5734 2018 JRNL REFN ISSN 1521-3765 JRNL PMID 29250863 JRNL DOI 10.1002/CHEM.201705886 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 35920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6308 - 5.5850 1.00 2868 142 0.1734 0.2114 REMARK 3 2 5.5850 - 4.4378 1.00 2707 147 0.1409 0.1629 REMARK 3 3 4.4378 - 3.8782 1.00 2673 135 0.1513 0.1812 REMARK 3 4 3.8782 - 3.5242 1.00 2641 143 0.1637 0.2118 REMARK 3 5 3.5242 - 3.2720 1.00 2668 131 0.1844 0.2257 REMARK 3 6 3.2720 - 3.0793 1.00 2599 152 0.1981 0.2122 REMARK 3 7 3.0793 - 2.9252 1.00 2623 146 0.2099 0.2806 REMARK 3 8 2.9252 - 2.7980 1.00 2640 136 0.2124 0.2776 REMARK 3 9 2.7980 - 2.6903 1.00 2592 156 0.2200 0.2741 REMARK 3 10 2.6903 - 2.5975 1.00 2601 140 0.2241 0.2648 REMARK 3 11 2.5975 - 2.5164 1.00 2586 127 0.2273 0.2727 REMARK 3 12 2.5164 - 2.4445 1.00 2611 143 0.2333 0.3002 REMARK 3 13 2.4445 - 2.3802 0.89 2303 110 0.2582 0.2857 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4038 REMARK 3 ANGLE : 1.132 5456 REMARK 3 CHIRALITY : 0.046 593 REMARK 3 PLANARITY : 0.006 684 REMARK 3 DIHEDRAL : 13.706 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 29.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LITHIUM SULFATE, 1.6 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.37950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.37950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.37950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.37950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 LYS A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 LEU A 315 REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 LYS B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 537 O HOH B 594 2.08 REMARK 500 O HOH A 595 O HOH A 597 2.16 REMARK 500 OD1 ASN A 39 O HOH A 501 2.18 REMARK 500 NH1 ARG A 247 O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 46 174.90 179.10 REMARK 500 SER A 76 -162.66 71.13 REMARK 500 PHE A 149 32.04 -85.88 REMARK 500 LYS A 151 -27.05 71.23 REMARK 500 ALA A 194 -94.21 -158.80 REMARK 500 ASP A 254 88.99 -69.76 REMARK 500 ASP B 46 174.27 179.23 REMARK 500 SER B 76 -162.60 72.57 REMARK 500 ALA B 194 -98.27 -159.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 ASP A 35 OD1 94.7 REMARK 620 3 ASP A 35 OD2 105.3 54.4 REMARK 620 4 GLU B 116 OE2 96.4 94.5 142.7 REMARK 620 5 HIS B 163 ND1 98.6 94.7 141.7 2.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 HIS A 108 ND1 101.9 REMARK 620 3 HIS A 195 NE2 106.7 108.9 REMARK 620 4 HOH A 532 O 109.0 122.1 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 CYS A 220 SG 88.0 REMARK 620 3 HIS A 262 NE2 88.4 102.1 REMARK 620 4 8TW A 412 O01 169.5 100.5 83.9 REMARK 620 5 HOH A 532 O 98.9 110.7 146.5 83.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE2 REMARK 620 2 HIS A 163 ND1 131.7 REMARK 620 3 HIS B 33 NE2 125.7 17.5 REMARK 620 4 ASP B 35 OD1 125.1 14.6 3.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 106 NE2 REMARK 620 2 HIS B 108 ND1 100.9 REMARK 620 3 HIS B 195 NE2 110.3 105.8 REMARK 620 4 HOH B 506 O 110.4 110.1 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 110 OD2 REMARK 620 2 CYS B 220 SG 89.9 REMARK 620 3 HIS B 262 NE2 84.6 102.0 REMARK 620 4 8TW B 409 O14 165.7 101.8 84.9 REMARK 620 5 HOH B 506 O 88.8 124.4 133.1 91.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8TW A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8TW B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 411 DBREF 5NDB A 29 315 UNP Q8G9Q0 Q8G9Q0_PSEAI 29 276 DBREF 5NDB B 29 315 UNP Q8G9Q0 Q8G9Q0_PSEAI 29 276 SEQADV 5NDB GLY A 27 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5NDB PRO A 28 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5NDB GLY B 27 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5NDB PRO B 28 UNP Q8G9Q0 EXPRESSION TAG SEQRES 1 A 250 GLY PRO LYS SER SER ASP HIS VAL ASP LEU PRO TYR ASN SEQRES 2 A 250 LEU THR ALA THR LYS ILE ASP SER ASP VAL PHE VAL VAL SEQRES 3 A 250 THR ASP ARG ASP PHE TYR SER SER ASN VAL LEU VAL ALA SEQRES 4 A 250 LYS MET LEU ASP GLY THR VAL VAL ILE VAL SER SER PRO SEQRES 5 A 250 PHE GLU ASN LEU GLY THR GLN THR LEU MET ASP TRP VAL SEQRES 6 A 250 ALA LYS THR MET LYS PRO LYS LYS VAL VAL ALA ILE ASN SEQRES 7 A 250 THR HIS PHE HIS LEU ASP GLY THR GLY GLY ASN GLU ILE SEQRES 8 A 250 TYR LYS LYS MET GLY ALA GLU THR TRP SER SER ASP LEU SEQRES 9 A 250 THR LYS GLN LEU ARG LEU GLU GLU ASN LYS LYS ASP ARG SEQRES 10 A 250 ILE LYS ALA ALA GLU PHE TYR LYS ASN GLU ASP LEU LYS SEQRES 11 A 250 ARG ARG ILE LEU SER SER HIS PRO VAL PRO ALA ASP ASN SEQRES 12 A 250 VAL PHE ASP LEU LYS GLN GLY LYS VAL PHE SER PHE SER SEQRES 13 A 250 ASN GLU LEU VAL GLU VAL SER PHE PRO GLY PRO ALA HIS SEQRES 14 A 250 SER PRO ASP ASN VAL VAL VAL TYR PHE PRO LYS LYS LYS SEQRES 15 A 250 LEU LEU PHE GLY GLY CYS MET ILE LYS PRO LYS GLU LEU SEQRES 16 A 250 GLY TYR LEU GLY ASP ALA ASN VAL LYS ALA TRP PRO ASP SEQRES 17 A 250 SER ALA ARG ARG LEU LYS LYS PHE ASP ALA LYS ILE VAL SEQRES 18 A 250 ILE PRO GLY HIS GLY GLU TRP GLY GLY PRO GLU MET VAL SEQRES 19 A 250 ASN LYS THR ILE LYS VAL ALA GLU LYS ALA VAL GLY GLU SEQRES 20 A 250 MET ARG LEU SEQRES 1 B 250 GLY PRO LYS SER SER ASP HIS VAL ASP LEU PRO TYR ASN SEQRES 2 B 250 LEU THR ALA THR LYS ILE ASP SER ASP VAL PHE VAL VAL SEQRES 3 B 250 THR ASP ARG ASP PHE TYR SER SER ASN VAL LEU VAL ALA SEQRES 4 B 250 LYS MET LEU ASP GLY THR VAL VAL ILE VAL SER SER PRO SEQRES 5 B 250 PHE GLU ASN LEU GLY THR GLN THR LEU MET ASP TRP VAL SEQRES 6 B 250 ALA LYS THR MET LYS PRO LYS LYS VAL VAL ALA ILE ASN SEQRES 7 B 250 THR HIS PHE HIS LEU ASP GLY THR GLY GLY ASN GLU ILE SEQRES 8 B 250 TYR LYS LYS MET GLY ALA GLU THR TRP SER SER ASP LEU SEQRES 9 B 250 THR LYS GLN LEU ARG LEU GLU GLU ASN LYS LYS ASP ARG SEQRES 10 B 250 ILE LYS ALA ALA GLU PHE TYR LYS ASN GLU ASP LEU LYS SEQRES 11 B 250 ARG ARG ILE LEU SER SER HIS PRO VAL PRO ALA ASP ASN SEQRES 12 B 250 VAL PHE ASP LEU LYS GLN GLY LYS VAL PHE SER PHE SER SEQRES 13 B 250 ASN GLU LEU VAL GLU VAL SER PHE PRO GLY PRO ALA HIS SEQRES 14 B 250 SER PRO ASP ASN VAL VAL VAL TYR PHE PRO LYS LYS LYS SEQRES 15 B 250 LEU LEU PHE GLY GLY CYS MET ILE LYS PRO LYS GLU LEU SEQRES 16 B 250 GLY TYR LEU GLY ASP ALA ASN VAL LYS ALA TRP PRO ASP SEQRES 17 B 250 SER ALA ARG ARG LEU LYS LYS PHE ASP ALA LYS ILE VAL SEQRES 18 B 250 ILE PRO GLY HIS GLY GLU TRP GLY GLY PRO GLU MET VAL SEQRES 19 B 250 ASN LYS THR ILE LYS VAL ALA GLU LYS ALA VAL GLY GLU SEQRES 20 B 250 MET ARG LEU HET ZN A 401 1 HET ZN A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET ZN A 407 1 HET DMS A 408 4 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HET 8TW A 412 14 HET ZN B 401 1 HET ZN B 402 1 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET ZN B 406 1 HET CL B 407 1 HET CL B 408 1 HET 8TW B 409 14 HET SO4 B 410 5 HET TRS B 411 8 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETNAM 8TW (1~{S},4~{R},5~{S})-7,7-BIS(CHLORANYL)-6,6- HETNAM 2 8TW BIS(OXIDANYL)-2$L^{4}-THIABICYCLO[3.2.0]HEPT-2-ENE-4- HETNAM 3 8TW CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 ZN 6(ZN 2+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 10 DMS C2 H6 O S FORMUL 11 CL 5(CL 1-) FORMUL 14 8TW 2(C7 H8 CL2 O4 S) FORMUL 24 SO4 O4 S 2- FORMUL 25 TRS C4 H12 N O3 1+ FORMUL 26 HOH *216(H2 O) HELIX 1 AA1 GLU A 80 LYS A 96 1 17 HELIX 2 AA2 HIS A 108 GLY A 113 1 6 HELIX 3 AA3 GLY A 114 MET A 121 1 8 HELIX 4 AA4 ASP A 129 LYS A 141 1 13 HELIX 5 AA5 ASP A 142 ALA A 147 1 6 HELIX 6 AA6 GLU A 148 LYS A 151 5 4 HELIX 7 AA7 ASN A 152 SER A 161 1 10 HELIX 8 AA8 CYS A 220 ILE A 222 5 3 HELIX 9 AA9 ALA A 240 ARG A 247 1 8 HELIX 10 AB1 PRO A 296 ARG A 314 1 19 HELIX 11 AB2 GLU B 80 LYS B 96 1 17 HELIX 12 AB3 HIS B 108 GLY B 113 1 6 HELIX 13 AB4 GLY B 114 MET B 121 1 8 HELIX 14 AB5 ASP B 129 LYS B 141 1 13 HELIX 15 AB6 ASP B 142 ALA B 147 1 6 HELIX 16 AB7 GLU B 153 SER B 161 1 9 HELIX 17 AB8 CYS B 220 ILE B 222 5 3 HELIX 18 AB9 ALA B 240 ARG B 247 1 8 HELIX 19 AC1 LEU B 248 PHE B 251 5 4 HELIX 20 AC2 PRO B 296 ARG B 314 1 19 SHEET 1 AA1 8 HIS A 33 ASP A 35 0 SHEET 2 AA1 8 LEU A 40 ASP A 46 -1 O ALA A 42 N VAL A 34 SHEET 3 AA1 8 VAL A 49 ASP A 54 -1 O THR A 53 N THR A 41 SHEET 4 AA1 8 SER A 61 LYS A 66 -1 O VAL A 62 N VAL A 52 SHEET 5 AA1 8 VAL A 72 VAL A 75 -1 O VAL A 73 N ALA A 65 SHEET 6 AA1 8 VAL A 100 ILE A 103 1 O VAL A 101 N ILE A 74 SHEET 7 AA1 8 GLU A 124 SER A 128 1 O GLU A 124 N ALA A 102 SHEET 8 AA1 8 ASN A 169 PHE A 171 1 O ASN A 169 N THR A 125 SHEET 1 AA2 5 LYS A 177 PHE A 181 0 SHEET 2 AA2 5 GLU A 184 SER A 189 -1 O VAL A 188 N LYS A 177 SHEET 3 AA2 5 VAL A 201 PHE A 204 -1 O TYR A 203 N GLU A 187 SHEET 4 AA2 5 LEU A 215 GLY A 219 -1 O PHE A 217 N VAL A 202 SHEET 5 AA2 5 ILE A 257 PRO A 260 1 O ILE A 259 N LEU A 216 SHEET 1 AA3 8 VAL B 34 LEU B 36 0 SHEET 2 AA3 8 LEU B 40 ASP B 46 -1 O LEU B 40 N LEU B 36 SHEET 3 AA3 8 VAL B 49 ASP B 54 -1 O VAL B 51 N THR B 43 SHEET 4 AA3 8 SER B 61 LYS B 66 -1 O VAL B 62 N VAL B 52 SHEET 5 AA3 8 VAL B 72 VAL B 75 -1 O VAL B 73 N ALA B 65 SHEET 6 AA3 8 VAL B 100 ILE B 103 1 O ILE B 103 N ILE B 74 SHEET 7 AA3 8 GLU B 124 SER B 128 1 O GLU B 124 N ALA B 102 SHEET 8 AA3 8 ASN B 169 PHE B 171 1 O ASN B 169 N THR B 125 SHEET 1 AA4 5 LYS B 177 PHE B 181 0 SHEET 2 AA4 5 GLU B 184 SER B 189 -1 O VAL B 186 N PHE B 179 SHEET 3 AA4 5 VAL B 201 PHE B 204 -1 O TYR B 203 N GLU B 187 SHEET 4 AA4 5 LEU B 215 GLY B 219 -1 O PHE B 217 N VAL B 202 SHEET 5 AA4 5 ILE B 257 PRO B 260 1 O ILE B 257 N LEU B 216 LINK NE2 HIS A 33 ZN ZN A 407 1555 1555 2.34 LINK OD1 ASP A 35 ZN ZN A 407 1555 1555 2.66 LINK OD2 ASP A 35 ZN ZN A 407 1555 1555 1.90 LINK NE2 HIS A 106 ZN ZN A 402 1555 1555 2.16 LINK ND1 HIS A 108 ZN ZN A 402 1555 1555 1.96 LINK OD2 ASP A 110 ZN ZN A 401 1555 1555 2.36 LINK OE2 GLU A 116 ZN ZN B 406 1555 6555 1.78 LINK ND1 HIS A 163 ZN ZN B 406 1555 6555 2.00 LINK NE2 HIS A 195 ZN ZN A 402 1555 1555 2.16 LINK SG CYS A 220 ZN ZN A 401 1555 1555 2.46 LINK NE2 HIS A 262 ZN ZN A 401 1555 1555 2.08 LINK ZN ZN A 401 O01 8TW A 412 1555 1555 2.48 LINK ZN ZN A 401 O HOH A 532 1555 1555 1.97 LINK ZN ZN A 402 O HOH A 532 1555 1555 1.80 LINK ZN ZN A 407 OE2 GLU B 116 5455 1555 2.00 LINK ZN ZN A 407 ND1 HIS B 163 5455 1555 2.23 LINK NE2 HIS B 33 ZN ZN B 406 1555 1555 2.10 LINK OD1 ASP B 35 ZN ZN B 406 1555 1555 1.95 LINK NE2 HIS B 106 ZN ZN B 402 1555 1555 2.19 LINK ND1 HIS B 108 ZN ZN B 402 1555 1555 2.17 LINK OD2 ASP B 110 ZN ZN B 401 1555 1555 2.36 LINK NE2 HIS B 195 ZN ZN B 402 1555 1555 2.10 LINK SG CYS B 220 ZN ZN B 401 1555 1555 2.36 LINK NE2 HIS B 262 ZN ZN B 401 1555 1555 2.16 LINK ZN ZN B 401 O14 8TW B 409 1555 1555 2.49 LINK ZN ZN B 401 O HOH B 506 1555 1555 2.12 LINK ZN ZN B 402 O HOH B 506 1555 1555 2.10 SITE 1 AC1 6 ASP A 110 CYS A 220 HIS A 262 ZN A 402 SITE 2 AC1 6 8TW A 412 HOH A 532 SITE 1 AC2 6 HIS A 106 HIS A 108 HIS A 195 ZN A 401 SITE 2 AC2 6 8TW A 412 HOH A 532 SITE 1 AC3 1 LYS A 151 SITE 1 AC4 4 ARG A 135 GLU A 138 ARG A 143 ALA A 147 SITE 1 AC5 1 MET A 121 SITE 1 AC6 2 8TW A 412 HOH A 514 SITE 1 AC7 4 HIS A 33 ASP A 35 GLU B 116 HIS B 163 SITE 1 AC8 7 ASP A 35 LEU A 36 PRO A 37 ASN B 81 SITE 2 AC8 7 GLN B 85 LYS B 120 HOH B 562 SITE 1 AC9 3 VAL A 178 HOH A 562 HOH A 568 SITE 1 AD1 1 HOH A 591 SITE 1 AD2 13 TYR A 59 PHE A 79 ASP A 110 HIS A 195 SITE 2 AD2 13 CYS A 220 LYS A 223 TYR A 232 HIS A 262 SITE 3 AD2 13 ZN A 401 ZN A 402 GOL A 406 HOH A 532 SITE 4 AD2 13 HOH A 577 SITE 1 AD3 6 ASP B 110 CYS B 220 HIS B 262 ZN B 402 SITE 2 AD3 6 8TW B 409 HOH B 506 SITE 1 AD4 6 HIS B 106 HIS B 108 HIS B 195 ZN B 401 SITE 2 AD4 6 8TW B 409 HOH B 506 SITE 1 AD5 2 TYR B 59 8TW B 409 SITE 1 AD6 3 PRO B 97 LYS B 98 MET B 121 SITE 1 AD7 4 GLU A 116 HIS A 163 HIS B 33 ASP B 35 SITE 1 AD8 12 TYR B 59 PHE B 79 ASP B 110 HIS B 195 SITE 2 AD8 12 CYS B 220 LYS B 223 TYR B 232 HIS B 262 SITE 3 AD8 12 ZN B 401 ZN B 402 GOL B 403 HOH B 506 SITE 1 AD9 3 ARG B 157 SER B 161 HOH B 507 SITE 1 AE1 3 LEU A 230 GLU A 312 ASP B 235 CRYST1 130.758 130.758 102.759 90.00 90.00 90.00 P 42 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009732 0.00000