HEADER RNA 08-MAR-17 5NDI TITLE THE STRUCTURE OF THE E.COLI GUANIDINE II RIBOSWITCH P1 STEM-LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*UP*UP*UP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*CP*UP*GP*(CBV)P*AP*AP*A)- COMPND 4 3'); COMPND 5 CHAIN: A, B, C, D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562 KEYWDS GUANIDINE II RIBOSWITCH, STEM-LOOP, TETRA LOOP, DIMER, RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,J.WANG,D.M.J.LILLEY REVDAT 4 08-MAY-24 5NDI 1 REMARK REVDAT 3 30-AUG-17 5NDI 1 REMARK REVDAT 2 05-JUL-17 5NDI 1 JRNL REVDAT 1 31-MAY-17 5NDI 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL THE STRUCTURE OF THE GUANIDINE-II RIBOSWITCH. JRNL REF CELL CHEM BIOL V. 24 695 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28529131 JRNL DOI 10.1016/J.CHEMBIOL.2017.05.014 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 20792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3491 - 4.9135 0.99 2896 150 0.1276 0.1651 REMARK 3 2 4.9135 - 3.9011 0.98 2895 146 0.1482 0.1819 REMARK 3 3 3.9011 - 3.4082 0.97 2835 136 0.1794 0.2700 REMARK 3 4 3.4082 - 3.0967 0.97 2872 150 0.2158 0.3123 REMARK 3 5 3.0967 - 2.8748 0.97 2816 166 0.2939 0.3304 REMARK 3 6 2.8748 - 2.7054 0.96 2782 154 0.4127 0.4307 REMARK 3 7 2.7054 - 2.5699 0.89 2662 132 0.4640 0.4694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1916 REMARK 3 ANGLE : 1.244 2980 REMARK 3 CHIRALITY : 0.044 392 REMARK 3 PLANARITY : 0.007 84 REMARK 3 DIHEDRAL : 10.459 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7590 16.2206 48.6564 REMARK 3 T TENSOR REMARK 3 T11: 0.7336 T22: 0.5561 REMARK 3 T33: 0.5211 T12: -0.0085 REMARK 3 T13: -0.0885 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 1.6652 L22: 3.4965 REMARK 3 L33: 3.8987 L12: 0.5659 REMARK 3 L13: 1.7150 L23: 3.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.4842 S12: -0.1576 S13: -0.1556 REMARK 3 S21: 0.2167 S22: -0.5557 S23: 0.3505 REMARK 3 S31: 1.1403 S32: -0.3240 S33: 0.0396 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4941 20.8495 48.0448 REMARK 3 T TENSOR REMARK 3 T11: 0.8500 T22: 0.5724 REMARK 3 T33: 0.6231 T12: -0.0587 REMARK 3 T13: -0.0636 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 2.7830 L22: 6.7420 REMARK 3 L33: 2.2777 L12: -2.3741 REMARK 3 L13: -0.3902 L23: 1.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.2285 S12: -0.2474 S13: 0.0364 REMARK 3 S21: -0.7059 S22: -0.0692 S23: 0.1731 REMARK 3 S31: 0.1306 S32: -0.0501 S33: -0.0883 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3794 -3.7099 47.5839 REMARK 3 T TENSOR REMARK 3 T11: 0.8000 T22: 0.6205 REMARK 3 T33: 0.5988 T12: 0.0201 REMARK 3 T13: -0.1500 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.9672 L22: 2.8796 REMARK 3 L33: 2.3089 L12: -0.8476 REMARK 3 L13: 0.3177 L23: -0.5698 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.1494 S13: 0.1501 REMARK 3 S21: -0.1951 S22: 0.1713 S23: -0.1107 REMARK 3 S31: -0.1501 S32: 0.2244 S33: -0.2252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3597 -8.2776 48.2317 REMARK 3 T TENSOR REMARK 3 T11: 0.8824 T22: 0.5924 REMARK 3 T33: 0.6178 T12: -0.0140 REMARK 3 T13: -0.0839 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.7725 L22: 7.7067 REMARK 3 L33: 1.5836 L12: -3.1050 REMARK 3 L13: 2.1483 L23: -1.6550 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: -0.1535 S13: 0.0367 REMARK 3 S21: -0.5774 S22: 0.2529 S23: 0.4843 REMARK 3 S31: -0.2753 S32: 0.1103 S33: -0.0755 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7263 19.3356 69.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.8922 T22: 0.6966 REMARK 3 T33: 0.5877 T12: -0.0048 REMARK 3 T13: 0.0868 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0871 L22: 1.9065 REMARK 3 L33: 1.0351 L12: 0.3446 REMARK 3 L13: 0.5763 L23: -0.9663 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: 0.0929 S13: -0.2198 REMARK 3 S21: -0.0664 S22: 0.1210 S23: 0.3940 REMARK 3 S31: 0.2740 S32: 0.0323 S33: -0.1935 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9510 26.0396 78.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.6547 T22: 1.0577 REMARK 3 T33: 0.6893 T12: 0.0472 REMARK 3 T13: 0.1095 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.2004 L22: 1.9843 REMARK 3 L33: 3.9588 L12: 1.5454 REMARK 3 L13: 0.5856 L23: 0.8227 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.4464 S13: 0.0077 REMARK 3 S21: 0.2586 S22: -0.3934 S23: 0.4360 REMARK 3 S31: 0.5703 S32: 0.2020 S33: 0.3343 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0872 27.4171 69.3864 REMARK 3 T TENSOR REMARK 3 T11: 0.6515 T22: 0.8438 REMARK 3 T33: 0.6283 T12: 0.0535 REMARK 3 T13: 0.0593 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 7.6646 L22: 4.3694 REMARK 3 L33: 5.7430 L12: -0.9084 REMARK 3 L13: -2.1748 L23: -4.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0266 S13: -0.0138 REMARK 3 S21: -0.6717 S22: -0.1462 S23: -0.1892 REMARK 3 S31: 0.5805 S32: 0.5606 S33: 0.0119 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4773 23.3284 74.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.7292 T22: 0.9813 REMARK 3 T33: 0.6533 T12: 0.1301 REMARK 3 T13: 0.0759 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 1.9310 L22: 3.4930 REMARK 3 L33: 3.1792 L12: -0.0449 REMARK 3 L13: -0.2260 L23: 3.1039 REMARK 3 S TENSOR REMARK 3 S11: 0.3301 S12: -0.3377 S13: 0.5669 REMARK 3 S21: -0.1386 S22: -0.3611 S23: -0.6486 REMARK 3 S31: 0.9747 S32: 0.1786 S33: 0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0088 29.4583 61.6777 REMARK 3 T TENSOR REMARK 3 T11: 0.5165 T22: 0.8710 REMARK 3 T33: 0.4946 T12: 0.1230 REMARK 3 T13: -0.0161 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 5.8066 L22: 7.1318 REMARK 3 L33: 5.4963 L12: 3.9510 REMARK 3 L13: -1.4576 L23: -0.5402 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.6875 S13: -0.0891 REMARK 3 S21: 0.4965 S22: -0.4288 S23: -0.7456 REMARK 3 S31: 0.4829 S32: 1.3097 S33: 0.6648 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0787 33.2525 69.0415 REMARK 3 T TENSOR REMARK 3 T11: 0.5850 T22: 0.9759 REMARK 3 T33: 0.6253 T12: -0.0351 REMARK 3 T13: -0.0822 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 7.2306 L22: 4.0433 REMARK 3 L33: 3.1719 L12: 1.3113 REMARK 3 L13: 0.7685 L23: -2.5660 REMARK 3 S TENSOR REMARK 3 S11: -0.1756 S12: 0.1643 S13: 0.1219 REMARK 3 S21: -0.3913 S22: 0.2641 S23: 0.3167 REMARK 3 S31: 0.1802 S32: 0.2759 S33: -0.1537 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4088 34.1039 66.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.5239 T22: 0.8428 REMARK 3 T33: 0.5981 T12: -0.0602 REMARK 3 T13: 0.0369 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 4.2255 L22: 3.4406 REMARK 3 L33: 6.4561 L12: 1.0843 REMARK 3 L13: 5.0533 L23: 0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -1.1937 S13: 0.3627 REMARK 3 S21: -0.1308 S22: -0.7007 S23: 0.1221 REMARK 3 S31: -0.2359 S32: -0.3973 S33: 0.7394 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 51.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.380 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM CHLORIDE, 0.05 M MES REMARK 280 PH 5.6, 2.0 M LITHIUM SULFATE MONOHYDRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.53300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.09250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.53300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.09250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' G A 16 O2P CBV A 17 0.47 REMARK 500 O3' G C 16 O3P CBV C 17 0.51 REMARK 500 O3' G D 16 O3P CBV D 17 0.68 REMARK 500 O3' G B 16 O2P CBV B 17 0.69 REMARK 500 HO3' CBV A 17 P A A 18 0.77 REMARK 500 HO3' CBV B 17 P A B 18 0.78 REMARK 500 HO3' CBV C 17 P A C 18 0.78 REMARK 500 HO3' CBV D 17 P A D 18 0.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G B 16 and CBV B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV B 17 and A B REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G C 16 and CBV C REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV C 17 and A C REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G D 16 and CBV D REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV D 17 and A D REMARK 800 18 DBREF 5NDI A 1 20 PDB 5NDI 5NDI 1 20 DBREF 5NDI B 1 20 PDB 5NDI 5NDI 1 20 DBREF 5NDI C 1 20 PDB 5NDI 5NDI 1 20 DBREF 5NDI D 1 20 PDB 5NDI 5NDI 1 20 SEQRES 1 A 20 U U U G C A G G A C G A C SEQRES 2 A 20 C U G CBV A A A SEQRES 1 B 20 U U U G C A G G A C G A C SEQRES 2 B 20 C U G CBV A A A SEQRES 1 C 20 U U U G C A G G A C G A C SEQRES 2 C 20 C U G CBV A A A SEQRES 1 D 20 U U U G C A G G A C G A C SEQRES 2 D 20 C U G CBV A A A HET CBV A 17 33 HET CBV B 17 33 HET CBV C 17 33 HET CBV D 17 33 HET GAI A 101 9 HET GAI B 101 9 HET NA B 102 1 HET GAI C 101 9 HET GAI D 101 9 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM GAI GUANIDINE HETNAM NA SODIUM ION FORMUL 1 CBV 4(C9 H13 BR N3 O8 P) FORMUL 5 GAI 4(C H5 N3) FORMUL 7 NA NA 1+ FORMUL 10 HOH *4(H2 O) LINK O3' G A 16 P CBV A 17 1555 1555 1.60 LINK O3' CBV A 17 P A A 18 1555 1555 1.59 LINK O3' G B 16 P CBV B 17 1555 1555 1.61 LINK O3' CBV B 17 P A B 18 1555 1555 1.60 LINK O3' G C 16 P CBV C 17 1555 1555 1.61 LINK O3' CBV C 17 P A C 18 1555 1555 1.60 LINK O3' G D 16 P CBV D 17 1555 1555 1.61 LINK O3' CBV D 17 P A D 18 1555 1555 1.60 SITE 1 AC1 4 G A 8 A A 9 C A 10 G A 11 SITE 1 AC2 4 G B 8 A B 9 C B 10 G B 11 SITE 1 AC3 1 G B 8 SITE 1 AC4 4 G C 8 A C 9 C C 10 G C 11 SITE 1 AC5 4 G D 8 A D 9 C D 10 G D 11 SITE 1 AC6 9 G A 7 G A 8 G B 4 C B 5 SITE 2 AC6 9 A B 6 U B 15 A B 18 HOH B 202 SITE 3 AC6 9 HOH B 203 SITE 1 AC7 7 G A 8 U B 3 G B 4 G B 16 SITE 2 AC7 7 A B 19 HOH B 202 HOH B 203 SITE 1 AC8 7 G C 4 C C 5 A C 6 U C 15 SITE 2 AC8 7 A C 18 G D 7 G D 8 SITE 1 AC9 6 U C 3 G C 4 C C 5 G C 16 SITE 2 AC9 6 A C 19 G D 8 SITE 1 AD1 6 G C 8 G D 4 C D 5 A D 6 SITE 2 AD1 6 U D 15 A D 18 SITE 1 AD2 7 U B 2 G C 8 U D 3 G D 4 SITE 2 AD2 7 C D 5 G D 16 A D 19 CRYST1 47.476 48.185 153.066 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006533 0.00000