HEADER HYDROLASE 08-MAR-17 5NDL OBSLTE 27-FEB-19 5NDL 6IBW TITLE CRH5 TRANSGLYCOSYLASE COMPLEXED WITH NAG4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRH-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 GENE: Y699_09027; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CROSS-LINK, TRANSGLYCOSYLASE, GH16, CELL WALL ASSEMBLY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.FANG,D.M.F.VAN AALTEN REVDAT 2 27-FEB-19 5NDL 1 OBSLTE REVDAT 1 16-MAY-18 5NDL 0 JRNL AUTH W.FANG,D.M.F.VAN AALTEN JRNL TITL CRH5 TRANSGLYCOSYLASE COMPLEXED WITH NAG4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 13767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : 2.09000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3998 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3512 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5482 ; 1.441 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8162 ; 1.054 ; 3.025 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 6.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.243 ;24.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;19.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4454 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 1.334 ; 3.883 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1941 ; 1.334 ; 3.882 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 2.398 ; 5.818 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2425 ; 2.398 ; 5.819 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2056 ; 1.253 ; 4.153 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2057 ; 1.252 ; 4.155 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3059 ; 2.230 ; 6.172 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4259 ; 4.536 ;31.906 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4256 ; 4.533 ;31.920 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13767 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 63.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.0, 1.6 M AMMONIUM SULFATE AND 21 MM ZNCL2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.80850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.81950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.81950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.80850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 TRP A 22 REMARK 465 SER A 23 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 VAL A 269 REMARK 465 ASP A 270 REMARK 465 ILE A 271 REMARK 465 SER A 272 REMARK 465 SER A 273 REMARK 465 SER A 274 REMARK 465 SER A 275 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 TRP B 22 REMARK 465 SER B 23 REMARK 465 GLY B 267 REMARK 465 SER B 268 REMARK 465 VAL B 269 REMARK 465 ASP B 270 REMARK 465 ILE B 271 REMARK 465 SER B 272 REMARK 465 SER B 273 REMARK 465 SER B 274 REMARK 465 SER B 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 190 OG1 THR B 193 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 91 154.01 63.66 REMARK 500 THR A 142 59.21 -100.46 REMARK 500 THR A 144 -166.30 -127.24 REMARK 500 GLN A 197 30.70 -151.39 REMARK 500 SER B 51 -66.63 -160.25 REMARK 500 ALA B 80 55.18 -141.63 REMARK 500 PHE B 91 155.26 57.82 REMARK 500 TYR B 145 58.55 -93.54 REMARK 500 ASP B 146 -81.31 -41.40 REMARK 500 ARG B 147 -43.82 157.41 REMARK 500 THR B 155 68.40 29.44 REMARK 500 LYS B 190 67.29 26.19 REMARK 500 GLN B 197 26.48 -150.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 52 LEU B 53 149.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 301 through NAG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 305 through NAG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 301 through NAG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 305 through NAG B 306 DBREF1 5NDL A 22 275 UNP A0A0J5PGY1_ASPFM DBREF2 5NDL A A0A0J5PGY1 22 275 DBREF1 5NDL B 22 275 UNP A0A0J5PGY1_ASPFM DBREF2 5NDL B A0A0J5PGY1 22 275 SEQADV 5NDL HIS A 16 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS A 17 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS A 18 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS A 19 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS A 20 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS A 21 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 16 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 17 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 18 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 19 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 20 UNP A0A0J5PGY EXPRESSION TAG SEQADV 5NDL HIS B 21 UNP A0A0J5PGY EXPRESSION TAG SEQRES 1 A 260 HIS HIS HIS HIS HIS HIS TRP SER LYS CYS ASN PRO LEU SEQRES 2 A 260 GLU LYS THR CYS PRO PRO ASN LYS GLY LEU ALA ALA SER SEQRES 3 A 260 THR TYR THR ALA ASP PHE THR SER ALA SER ALA LEU ASP SEQRES 4 A 260 GLN TRP GLU VAL THR ALA GLY LYS VAL PRO VAL GLY PRO SEQRES 5 A 260 GLN GLY ALA GLU PHE THR VAL ALA LYS GLN GLY ASP ALA SEQRES 6 A 260 PRO THR ILE ASP THR ASP PHE TYR PHE PHE PHE GLY LYS SEQRES 7 A 260 ALA GLU VAL VAL MET LYS ALA ALA PRO GLY THR GLY VAL SEQRES 8 A 260 VAL SER SER ILE VAL LEU GLU SER ASP ASP LEU ASP GLU SEQRES 9 A 260 VAL ASP TRP GLU VAL LEU GLY GLY ASP THR THR GLN VAL SEQRES 10 A 260 GLN THR ASN TYR PHE GLY LYS GLY ASP THR THR THR TYR SEQRES 11 A 260 ASP ARG GLY THR TYR VAL PRO VAL ALA THR PRO GLN GLU SEQRES 12 A 260 THR PHE HIS THR TYR THR ILE ASP TRP THR LYS ASP ALA SEQRES 13 A 260 VAL THR TRP SER ILE ASP GLY ALA VAL VAL ARG THR LEU SEQRES 14 A 260 THR TYR ASN ASP ALA LYS GLY GLY THR ARG PHE PRO GLN SEQRES 15 A 260 THR PRO MET ARG LEU ARG LEU GLY SER TRP ALA GLY GLY SEQRES 16 A 260 ASP PRO SER ASN PRO LYS GLY THR ILE GLU TRP ALA GLY SEQRES 17 A 260 GLY LEU THR ASP TYR SER ALA GLY PRO TYR THR MET TYR SEQRES 18 A 260 VAL LYS SER VAL ARG ILE GLU ASN ALA ASN PRO ALA GLU SEQRES 19 A 260 SER TYR THR TYR SER ASP ASN SER GLY SER TRP GLN SER SEQRES 20 A 260 ILE LYS PHE ASP GLY SER VAL ASP ILE SER SER SER SER SEQRES 1 B 260 HIS HIS HIS HIS HIS HIS TRP SER LYS CYS ASN PRO LEU SEQRES 2 B 260 GLU LYS THR CYS PRO PRO ASN LYS GLY LEU ALA ALA SER SEQRES 3 B 260 THR TYR THR ALA ASP PHE THR SER ALA SER ALA LEU ASP SEQRES 4 B 260 GLN TRP GLU VAL THR ALA GLY LYS VAL PRO VAL GLY PRO SEQRES 5 B 260 GLN GLY ALA GLU PHE THR VAL ALA LYS GLN GLY ASP ALA SEQRES 6 B 260 PRO THR ILE ASP THR ASP PHE TYR PHE PHE PHE GLY LYS SEQRES 7 B 260 ALA GLU VAL VAL MET LYS ALA ALA PRO GLY THR GLY VAL SEQRES 8 B 260 VAL SER SER ILE VAL LEU GLU SER ASP ASP LEU ASP GLU SEQRES 9 B 260 VAL ASP TRP GLU VAL LEU GLY GLY ASP THR THR GLN VAL SEQRES 10 B 260 GLN THR ASN TYR PHE GLY LYS GLY ASP THR THR THR TYR SEQRES 11 B 260 ASP ARG GLY THR TYR VAL PRO VAL ALA THR PRO GLN GLU SEQRES 12 B 260 THR PHE HIS THR TYR THR ILE ASP TRP THR LYS ASP ALA SEQRES 13 B 260 VAL THR TRP SER ILE ASP GLY ALA VAL VAL ARG THR LEU SEQRES 14 B 260 THR TYR ASN ASP ALA LYS GLY GLY THR ARG PHE PRO GLN SEQRES 15 B 260 THR PRO MET ARG LEU ARG LEU GLY SER TRP ALA GLY GLY SEQRES 16 B 260 ASP PRO SER ASN PRO LYS GLY THR ILE GLU TRP ALA GLY SEQRES 17 B 260 GLY LEU THR ASP TYR SER ALA GLY PRO TYR THR MET TYR SEQRES 18 B 260 VAL LYS SER VAL ARG ILE GLU ASN ALA ASN PRO ALA GLU SEQRES 19 B 260 SER TYR THR TYR SER ASP ASN SER GLY SER TRP GLN SER SEQRES 20 B 260 ILE LYS PHE ASP GLY SER VAL ASP ILE SER SER SER SER HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG A 304 15 HET NAG A 305 14 HET NAG A 306 15 HET NAG B 301 14 HET NAG B 302 14 HET NAG B 303 14 HET NAG B 304 15 HET NAG B 305 14 HET NAG B 306 15 HETNAM NAG N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 PRO A 215 ALA A 222 1 8 HELIX 2 AA2 ASP A 227 GLY A 231 5 5 HELIX 3 AA3 SER A 259 GLN A 261 5 3 HELIX 4 AA4 ASN B 187 ALA B 189 5 3 HELIX 5 AA5 PRO B 215 GLY B 223 1 9 HELIX 6 AA6 ASP B 227 GLY B 231 5 5 HELIX 7 AA7 SER B 259 GLN B 261 5 3 SHEET 1 AA1 3 ASN A 35 LYS A 36 0 SHEET 2 AA1 3 SER A 250 TYR A 253 -1 O TYR A 251 N ASN A 35 SHEET 3 AA1 3 ILE A 263 LYS A 264 -1 O LYS A 264 N THR A 252 SHEET 1 AA2 3 THR A 42 ASP A 46 0 SHEET 2 AA2 3 TYR A 233 ASN A 244 -1 O ILE A 242 N TYR A 43 SHEET 3 AA2 3 ALA A 70 VAL A 74 -1 N VAL A 74 O TYR A 233 SHEET 1 AA3 6 THR A 42 ASP A 46 0 SHEET 2 AA3 6 TYR A 233 ASN A 244 -1 O ILE A 242 N TYR A 43 SHEET 3 AA3 6 GLY A 92 LYS A 99 -1 N GLU A 95 O ARG A 241 SHEET 4 AA3 6 HIS A 161 TRP A 167 -1 O TYR A 163 N VAL A 96 SHEET 5 AA3 6 ALA A 171 ILE A 176 -1 O SER A 175 N THR A 164 SHEET 6 AA3 6 ALA A 179 THR A 185 -1 O ARG A 182 N TRP A 174 SHEET 1 AA4 7 TRP A 56 ALA A 60 0 SHEET 2 AA4 7 THR A 82 THR A 85 -1 O ASP A 84 N GLU A 57 SHEET 3 AA4 7 MET A 200 ALA A 208 -1 O LEU A 204 N ILE A 83 SHEET 4 AA4 7 GLY A 103 SER A 114 -1 N SER A 109 O GLY A 205 SHEET 5 AA4 7 GLU A 119 GLY A 126 -1 O VAL A 120 N LEU A 112 SHEET 6 AA4 7 GLN A 131 PHE A 137 -1 O GLN A 133 N GLU A 123 SHEET 7 AA4 7 THR A 149 PRO A 152 -1 O VAL A 151 N VAL A 132 SHEET 1 AA5 3 ASN B 35 LYS B 36 0 SHEET 2 AA5 3 SER B 250 TYR B 253 -1 O TYR B 251 N ASN B 35 SHEET 3 AA5 3 ILE B 263 LYS B 264 -1 O LYS B 264 N THR B 252 SHEET 1 AA6 4 THR B 42 ASP B 46 0 SHEET 2 AA6 4 TYR B 233 ASN B 244 -1 O ILE B 242 N TYR B 43 SHEET 3 AA6 4 GLY B 69 VAL B 74 -1 N PHE B 72 O MET B 235 SHEET 4 AA6 4 VAL B 65 GLY B 66 -1 N GLY B 66 O GLY B 69 SHEET 1 AA7 6 THR B 42 ASP B 46 0 SHEET 2 AA7 6 TYR B 233 ASN B 244 -1 O ILE B 242 N TYR B 43 SHEET 3 AA7 6 GLY B 92 LYS B 99 -1 N GLU B 95 O ARG B 241 SHEET 4 AA7 6 HIS B 161 TRP B 167 -1 O TYR B 163 N VAL B 96 SHEET 5 AA7 6 ALA B 171 ILE B 176 -1 O THR B 173 N ASP B 166 SHEET 6 AA7 6 ALA B 179 THR B 185 -1 O LEU B 184 N VAL B 172 SHEET 1 AA8 7 TRP B 56 ALA B 60 0 SHEET 2 AA8 7 THR B 82 THR B 85 -1 O ASP B 84 N GLU B 57 SHEET 3 AA8 7 MET B 200 ALA B 208 -1 O LEU B 204 N ILE B 83 SHEET 4 AA8 7 VAL B 106 SER B 114 -1 N VAL B 111 O ARG B 203 SHEET 5 AA8 7 GLU B 119 LEU B 125 -1 O VAL B 120 N LEU B 112 SHEET 6 AA8 7 GLN B 131 PHE B 137 -1 O GLN B 133 N GLU B 123 SHEET 7 AA8 7 THR B 149 PRO B 152 -1 O VAL B 151 N VAL B 132 SSBOND 1 CYS A 25 CYS A 32 1555 1555 1.99 SSBOND 2 CYS B 25 CYS B 32 1555 1555 2.03 LINK C1 NAG A 301 O4 NAG A 302 1555 1555 1.45 LINK C1 NAG A 302 O4 NAG A 303 1555 1555 1.44 LINK C1 NAG A 303 O4 NAG A 304 1555 1555 1.42 LINK C1 NAG A 305 O4 NAG A 306 1555 1555 1.43 LINK C1 NAG B 301 O4 NAG B 302 1555 1555 1.44 LINK C1 NAG B 302 O4 NAG B 303 1555 1555 1.42 LINK C1 NAG B 303 O4 NAG B 304 1555 1555 1.42 LINK C1 NAG B 305 O4 NAG B 306 1555 1555 1.44 CISPEP 1 GLY A 191 GLY A 192 0 -16.71 CISPEP 2 GLY A 231 PRO A 232 0 -0.24 CISPEP 3 THR B 143 THR B 144 0 -6.59 CISPEP 4 ASP B 146 ARG B 147 0 0.26 CISPEP 5 LYS B 190 GLY B 191 0 -11.42 CISPEP 6 GLY B 231 PRO B 232 0 -0.13 SITE 1 AC1 15 ALA A 60 SER A 109 VAL A 111 GLU A 119 SITE 2 AC1 15 ASP A 121 GLU A 123 PHE A 137 THR A 142 SITE 3 AC1 15 ARG A 203 TRP A 207 ALA A 208 ASN A 214 SITE 4 AC1 15 NAG A 305 HOH A 405 HOH A 410 SITE 1 AC2 19 ALA A 60 SER A 109 VAL A 111 GLU A 119 SITE 2 AC2 19 ASP A 121 GLU A 123 ASN A 135 PHE A 137 SITE 3 AC2 19 THR A 142 TYR A 145 ARG A 203 TRP A 207 SITE 4 AC2 19 ALA A 208 ASN A 214 THR A 218 TRP A 221 SITE 5 AC2 19 NAG A 301 HOH A 405 HOH A 410 SITE 1 AC3 17 ALA B 60 THR B 82 SER B 109 VAL B 111 SITE 2 AC3 17 GLU B 119 ASP B 121 GLU B 123 PHE B 137 SITE 3 AC3 17 THR B 142 ARG B 203 GLY B 205 TRP B 207 SITE 4 AC3 17 ALA B 208 ASN B 214 NAG B 305 HOH B 406 SITE 5 AC3 17 HOH B 408 SITE 1 AC4 23 ALA B 60 THR B 82 SER B 109 VAL B 111 SITE 2 AC4 23 GLU B 119 ASP B 121 GLU B 123 GLN B 133 SITE 3 AC4 23 ASN B 135 PHE B 137 THR B 142 TYR B 145 SITE 4 AC4 23 ARG B 203 GLY B 205 TRP B 207 ALA B 208 SITE 5 AC4 23 ASN B 214 PRO B 215 THR B 218 TRP B 221 SITE 6 AC4 23 NAG B 301 HOH B 406 HOH B 408 CRYST1 55.617 75.529 117.639 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008501 0.00000