HEADER HYDROLASE 09-MAR-17 5NE1 TITLE L2 CLASS A SERINE-BETA-LACTAMASE IN COMPLEX WITH CYCLIC BORONATE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 GENE: BLAL2, L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SOLUBL21 KEYWDS BETA-LACTAMASE, CARBAPENEMASE, CYCLIC BORONATE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,K.CALVOPINA,J.SPENCER REVDAT 5 17-JAN-24 5NE1 1 REMARK REVDAT 4 30-OCT-19 5NE1 1 COMPND HETNAM FORMUL REVDAT 3 01-NOV-17 5NE1 1 JRNL REVDAT 2 20-SEP-17 5NE1 1 JRNL REVDAT 1 13-SEP-17 5NE1 0 JRNL AUTH K.CALVOPINA,P.HINCHLIFFE,J.BREM,K.J.HEESOM,S.JOHNSON,R.CAIN, JRNL AUTH 2 C.T.LOHANS,C.W.G.FISHWICK,C.J.SCHOFIELD,J.SPENCER,M.B.AVISON JRNL TITL STRUCTURAL/MECHANISTIC INSIGHTS INTO THE EFFICACY OF JRNL TITL 2 NONCLASSICAL BETA-LACTAMASE INHIBITORS AGAINST EXTENSIVELY JRNL TITL 3 DRUG RESISTANT STENOTROPHOMONAS MALTOPHILIA CLINICAL JRNL TITL 4 ISOLATES. JRNL REF MOL. MICROBIOL. V. 106 492 2017 JRNL REFN ESSN 1365-2958 JRNL PMID 28876489 JRNL DOI 10.1111/MMI.13831 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8540 - 5.1516 0.99 2741 156 0.1766 0.1881 REMARK 3 2 5.1516 - 4.0900 0.99 2658 141 0.1449 0.1584 REMARK 3 3 4.0900 - 3.5733 1.00 2622 146 0.1421 0.2063 REMARK 3 4 3.5733 - 3.2467 1.00 2632 125 0.1563 0.1933 REMARK 3 5 3.2467 - 3.0141 0.98 2557 140 0.1718 0.2086 REMARK 3 6 3.0141 - 2.8364 1.00 2573 135 0.1692 0.2075 REMARK 3 7 2.8364 - 2.6944 1.00 2600 134 0.1780 0.2541 REMARK 3 8 2.6944 - 2.5771 1.00 2580 143 0.1809 0.2050 REMARK 3 9 2.5771 - 2.4779 0.99 2593 121 0.1919 0.2156 REMARK 3 10 2.4779 - 2.3924 1.00 2578 128 0.1961 0.2544 REMARK 3 11 2.3924 - 2.3176 0.99 2564 126 0.2059 0.2858 REMARK 3 12 2.3176 - 2.2514 0.99 2542 142 0.2311 0.2715 REMARK 3 13 2.2514 - 2.1921 0.98 2495 139 0.2456 0.3181 REMARK 3 14 2.1921 - 2.1386 0.99 2556 122 0.2507 0.3280 REMARK 3 15 2.1386 - 2.0900 0.99 2536 136 0.2439 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4135 REMARK 3 ANGLE : 1.249 5622 REMARK 3 CHIRALITY : 0.059 652 REMARK 3 PLANARITY : 0.005 745 REMARK 3 DIHEDRAL : 14.330 1519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 137.3457 91.4552 231.7934 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1901 REMARK 3 T33: 0.2189 T12: 0.0228 REMARK 3 T13: 0.0201 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.6457 L22: 1.1592 REMARK 3 L33: 1.2575 L12: 0.3096 REMARK 3 L13: 0.5482 L23: 0.1879 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.0468 S13: 0.0602 REMARK 3 S21: 0.0158 S22: -0.0767 S23: 0.2955 REMARK 3 S31: 0.0171 S32: -0.1462 S33: 0.0229 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 166.7415 88.0840 242.0439 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.3077 REMARK 3 T33: 0.2054 T12: 0.0357 REMARK 3 T13: -0.0088 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.5126 L22: 1.6987 REMARK 3 L33: 0.8890 L12: -0.9675 REMARK 3 L13: -0.5598 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.5856 S13: 0.2225 REMARK 3 S21: 0.2101 S22: 0.1546 S23: -0.1271 REMARK 3 S31: -0.1124 S32: 0.0682 S33: -0.0547 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 167.1083 71.7612 233.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.1847 REMARK 3 T33: 0.1831 T12: -0.0050 REMARK 3 T13: -0.0077 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 6.9560 L22: 1.3316 REMARK 3 L33: 0.3928 L12: -0.3384 REMARK 3 L13: -0.8535 L23: -0.2190 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: 0.0765 S13: -0.3404 REMARK 3 S21: 0.1090 S22: 0.0417 S23: 0.0616 REMARK 3 S31: 0.0758 S32: 0.1142 S33: 0.1038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 160.5577 84.2241 242.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.1886 REMARK 3 T33: 0.1317 T12: 0.0184 REMARK 3 T13: 0.0094 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.9997 L22: 0.8768 REMARK 3 L33: 0.1915 L12: -0.0476 REMARK 3 L13: -0.3078 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.0727 S13: 0.0212 REMARK 3 S21: 0.0497 S22: -0.0040 S23: -0.0647 REMARK 3 S31: -0.0476 S32: -0.0201 S33: -0.0504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 148.0215 87.3959 242.8384 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2485 REMARK 3 T33: 0.2030 T12: 0.0308 REMARK 3 T13: 0.0179 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.2630 L22: 3.5849 REMARK 3 L33: 2.2343 L12: 0.0252 REMARK 3 L13: -0.6772 L23: -0.9276 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.1579 S13: -0.0277 REMARK 3 S21: 0.1188 S22: -0.0993 S23: 0.4753 REMARK 3 S31: 0.1350 S32: -0.0034 S33: 0.0624 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 152.7108 92.5023 229.6758 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1673 REMARK 3 T33: 0.1551 T12: -0.0085 REMARK 3 T13: 0.0212 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.6374 L22: 1.1898 REMARK 3 L33: 0.8144 L12: 0.0267 REMARK 3 L13: 0.1006 L23: 0.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: 0.1184 S13: 0.0445 REMARK 3 S21: 0.0120 S22: -0.0544 S23: 0.0266 REMARK 3 S31: 0.0622 S32: -0.0192 S33: -0.0213 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 141.0663 89.9240 223.7835 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.3007 REMARK 3 T33: 0.2447 T12: 0.0074 REMARK 3 T13: -0.0131 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.9182 L22: 2.0223 REMARK 3 L33: 3.6198 L12: 1.2650 REMARK 3 L13: -0.1378 L23: -0.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.3216 S13: -0.0934 REMARK 3 S21: -0.3845 S22: -0.0922 S23: 0.1108 REMARK 3 S31: 0.0147 S32: -0.2454 S33: -0.0155 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 182.8616 69.4369 205.9578 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2157 REMARK 3 T33: 0.1807 T12: -0.0062 REMARK 3 T13: -0.0054 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.4871 L22: 2.5835 REMARK 3 L33: 1.3406 L12: -0.0571 REMARK 3 L13: 0.0740 L23: 0.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.0311 S13: -0.0305 REMARK 3 S21: -0.3382 S22: -0.0253 S23: 0.0655 REMARK 3 S31: 0.1548 S32: 0.0074 S33: 0.0257 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 179.9457 95.0479 223.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1488 REMARK 3 T33: 0.2252 T12: -0.0217 REMARK 3 T13: -0.0015 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.4078 L22: 3.2009 REMARK 3 L33: 3.2723 L12: -0.9869 REMARK 3 L13: -0.4128 L23: 0.0885 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.1130 S13: 0.0478 REMARK 3 S21: -0.0067 S22: 0.0242 S23: -0.1300 REMARK 3 S31: -0.0559 S32: 0.2713 S33: -0.0495 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 164.9174 94.5919 216.3986 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.2242 REMARK 3 T33: 0.2526 T12: -0.0110 REMARK 3 T13: -0.0501 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.8726 L22: 2.9376 REMARK 3 L33: 6.2236 L12: -2.8103 REMARK 3 L13: -3.6793 L23: 3.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.1474 S13: -0.1173 REMARK 3 S21: 0.1154 S22: -0.0030 S23: 0.1860 REMARK 3 S31: 0.4824 S32: -0.3548 S33: -0.0518 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.3209 87.0483 217.0952 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1586 REMARK 3 T33: 0.1786 T12: -0.0091 REMARK 3 T13: -0.0143 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.3227 L22: 0.8677 REMARK 3 L33: 0.9484 L12: 0.0503 REMARK 3 L13: -0.0317 L23: -0.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.0418 S13: 0.0349 REMARK 3 S21: 0.0154 S22: 0.0087 S23: -0.0691 REMARK 3 S31: -0.0333 S32: 0.1268 S33: 0.0166 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 213 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 177.2082 72.3696 215.0389 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1496 REMARK 3 T33: 0.1494 T12: -0.0146 REMARK 3 T13: 0.0025 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.3643 L22: 1.3771 REMARK 3 L33: 1.0971 L12: -0.1249 REMARK 3 L13: 0.2333 L23: 0.6644 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.0070 S13: -0.0028 REMARK 3 S21: -0.0187 S22: 0.0446 S23: 0.1356 REMARK 3 S31: 0.0184 S32: -0.0706 S33: -0.0402 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 175.9136 65.6210 209.4127 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.1814 REMARK 3 T33: 0.1791 T12: -0.0334 REMARK 3 T13: -0.0010 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 4.7955 L22: 4.7435 REMARK 3 L33: 5.2504 L12: -1.8606 REMARK 3 L13: 2.5409 L23: -2.3343 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: -0.0037 S13: -0.3517 REMARK 3 S21: -0.0956 S22: 0.0493 S23: 0.2545 REMARK 3 S31: 0.1791 S32: 0.0713 S33: -0.2742 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 44.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL REAGENT (1.5 UL): 10% W/V PEG REMARK 280 20000, 20% V/V PEG MME 550, 0.02 M DL-GLUTAMIC ACID; 0.02 M DL- REMARK 280 ALANINE; 0.02 M GLYCINE; 0.02 M DL-LYSINE; 0.02 M DL-SERINE, 0.1 REMARK 280 M BICINE/TRIZMA BASE PH 8.5 PROTEIN (1 UL): 42 MG/ML, 50 MM TRIS REMARK 280 PH 7.5, 150 MM NACL, 5 MM IMIDAZOLE, 1 MM TCEP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLY B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 LYS B 16 REMARK 465 ALA B 17 REMARK 465 THR B 18 REMARK 465 ALA B 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH B 506 1.88 REMARK 500 O HOH A 423 O HOH B 440 1.95 REMARK 500 O HOH B 538 O HOH B 550 1.97 REMARK 500 NH1 ARG A 192 O HOH A 301 1.98 REMARK 500 O HOH A 424 O HOH A 451 2.01 REMARK 500 O HOH A 335 O HOH A 438 2.02 REMARK 500 O HOH B 441 O HOH B 482 2.02 REMARK 500 O HOH A 376 O HOH A 441 2.03 REMARK 500 O HOH A 429 O HOH A 435 2.05 REMARK 500 O HOH B 541 O HOH B 543 2.12 REMARK 500 NH1 ARG A 86 O HOH A 302 2.15 REMARK 500 O HOH A 351 O HOH B 490 2.16 REMARK 500 O HOH A 413 O HOH B 522 2.17 REMARK 500 O HOH B 548 O HOH B 560 2.18 REMARK 500 OG SER B 70 O16 OK3 B 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -136.40 44.37 REMARK 500 LYS A 115 -153.49 -134.79 REMARK 500 CYS A 220 -125.31 -104.28 REMARK 500 ASP A 242 0.46 -156.69 REMARK 500 ALA A 267 89.29 -155.19 REMARK 500 CYS B 69 -138.86 48.28 REMARK 500 LYS B 115 -152.44 -138.76 REMARK 500 CYS B 220 -132.19 -99.05 REMARK 500 GLU B 241 -81.23 -91.98 REMARK 500 ASP B 242 7.67 -150.83 REMARK 500 ALA B 267 80.61 -160.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide OK3 B 302 and SER B REMARK 800 70 DBREF 5NE1 A 14 291 UNP Q9RBQ1 Q9RBQ1_STEMA 28 303 DBREF 5NE1 B 14 291 UNP Q9RBQ1 Q9RBQ1_STEMA 28 303 SEQADV 5NE1 GLY A 12 UNP Q9RBQ1 EXPRESSION TAG SEQADV 5NE1 PRO A 13 UNP Q9RBQ1 EXPRESSION TAG SEQADV 5NE1 GLY B 12 UNP Q9RBQ1 EXPRESSION TAG SEQADV 5NE1 PRO B 13 UNP Q9RBQ1 EXPRESSION TAG SEQRES 1 A 278 GLY PRO ALA GLY LYS ALA THR ALA ASN ALA PRO THR ASP SEQRES 2 A 278 ALA ALA ILE THR ALA ALA SER ASP PHE ALA ALA LEU GLU SEQRES 3 A 278 LYS ALA CYS ALA GLY ARG LEU GLY VAL THR LEU LEU ASP SEQRES 4 A 278 THR ALA SER GLY ARG ARG ILE GLY HIS ARG GLN ASP GLU SEQRES 5 A 278 ARG PHE PRO MET CYS SER THR PHE LYS SER MET LEU ALA SEQRES 6 A 278 ALA THR VAL LEU SER GLN ALA GLU ARG MET PRO ALA LEU SEQRES 7 A 278 LEU ASP ARG ARG VAL PRO VAL GLY GLU ALA ASP LEU LEU SEQRES 8 A 278 SER HIS ALA PRO VAL THR ARG ARG HIS ALA GLY LYS ASP SEQRES 9 A 278 MET THR VAL ARG ASP LEU CYS ARG ALA THR ILE ILE THR SEQRES 10 A 278 SER ASP ASN THR ALA ALA ASN LEU LEU PHE GLY VAL VAL SEQRES 11 A 278 GLY GLY PRO PRO ALA VAL THR ALA PHE LEU ARG ALA SER SEQRES 12 A 278 GLY ASP THR VAL SER ARG SER ASP ARG LEU GLU PRO GLU SEQRES 13 A 278 LEU ASN SER PHE ALA LYS GLY ASP PRO ARG ASP THR THR SEQRES 14 A 278 THR PRO ALA ALA MET ALA ALA THR LEU GLN ARG VAL VAL SEQRES 15 A 278 LEU GLY GLU VAL LEU GLN PRO ALA SER ARG GLN GLN LEU SEQRES 16 A 278 ALA ASP TRP LEU ILE ASP ASN GLU THR GLY ASP ALA CYS SEQRES 17 A 278 LEU ARG ALA GLY LEU GLY LYS ARG TRP ARG VAL GLY ASP SEQRES 18 A 278 LYS THR GLY SER ASN GLY GLU ASP ALA ARG ASN ASP ILE SEQRES 19 A 278 ALA VAL LEU TRP PRO VAL ALA GLY GLY ALA PRO TRP VAL SEQRES 20 A 278 LEU THR ALA TYR LEU GLN ALA GLY ALA ILE SER TYR GLU SEQRES 21 A 278 GLN ARG ALA SER VAL LEU ALA GLN VAL GLY ARG ILE ALA SEQRES 22 A 278 ASP ARG LEU ILE GLY SEQRES 1 B 278 GLY PRO ALA GLY LYS ALA THR ALA ASN ALA PRO THR ASP SEQRES 2 B 278 ALA ALA ILE THR ALA ALA SER ASP PHE ALA ALA LEU GLU SEQRES 3 B 278 LYS ALA CYS ALA GLY ARG LEU GLY VAL THR LEU LEU ASP SEQRES 4 B 278 THR ALA SER GLY ARG ARG ILE GLY HIS ARG GLN ASP GLU SEQRES 5 B 278 ARG PHE PRO MET CYS SER THR PHE LYS SER MET LEU ALA SEQRES 6 B 278 ALA THR VAL LEU SER GLN ALA GLU ARG MET PRO ALA LEU SEQRES 7 B 278 LEU ASP ARG ARG VAL PRO VAL GLY GLU ALA ASP LEU LEU SEQRES 8 B 278 SER HIS ALA PRO VAL THR ARG ARG HIS ALA GLY LYS ASP SEQRES 9 B 278 MET THR VAL ARG ASP LEU CYS ARG ALA THR ILE ILE THR SEQRES 10 B 278 SER ASP ASN THR ALA ALA ASN LEU LEU PHE GLY VAL VAL SEQRES 11 B 278 GLY GLY PRO PRO ALA VAL THR ALA PHE LEU ARG ALA SER SEQRES 12 B 278 GLY ASP THR VAL SER ARG SER ASP ARG LEU GLU PRO GLU SEQRES 13 B 278 LEU ASN SER PHE ALA LYS GLY ASP PRO ARG ASP THR THR SEQRES 14 B 278 THR PRO ALA ALA MET ALA ALA THR LEU GLN ARG VAL VAL SEQRES 15 B 278 LEU GLY GLU VAL LEU GLN PRO ALA SER ARG GLN GLN LEU SEQRES 16 B 278 ALA ASP TRP LEU ILE ASP ASN GLU THR GLY ASP ALA CYS SEQRES 17 B 278 LEU ARG ALA GLY LEU GLY LYS ARG TRP ARG VAL GLY ASP SEQRES 18 B 278 LYS THR GLY SER ASN GLY GLU ASP ALA ARG ASN ASP ILE SEQRES 19 B 278 ALA VAL LEU TRP PRO VAL ALA GLY GLY ALA PRO TRP VAL SEQRES 20 B 278 LEU THR ALA TYR LEU GLN ALA GLY ALA ILE SER TYR GLU SEQRES 21 B 278 GLN ARG ALA SER VAL LEU ALA GLN VAL GLY ARG ILE ALA SEQRES 22 B 278 ASP ARG LEU ILE GLY HET PGE B 301 10 HET OK3 B 302 25 HETNAM PGE TRIETHYLENE GLYCOL HETNAM OK3 (4~{R})-4-[[4-(AMINOMETHYL)PHENYL]CARBONYLAMINO]-3,3- HETNAM 2 OK3 BIS(OXIDANYL)-2-OXA-3-BORANUIDABICYCLO[4.4.0]DECA- HETNAM 3 OK3 1(10),6,8-TRIENE-10-CARBOXYLIC ACID FORMUL 3 PGE C6 H14 O4 FORMUL 4 OK3 C17 H18 B N2 O6 1- FORMUL 5 HOH *325(H2 O) HELIX 1 AA1 ASN A 20 ALA A 30 1 11 HELIX 2 AA2 ASP A 32 CYS A 40 1 9 HELIX 3 AA3 CYS A 69 THR A 71 5 3 HELIX 4 AA4 PHE A 72 GLU A 85 1 14 HELIX 5 AA5 ALA A 89 ASP A 92 5 4 HELIX 6 AA6 GLY A 98 LEU A 102 5 5 HELIX 7 AA7 VAL A 108 ALA A 113 5 6 HELIX 8 AA8 VAL A 119 THR A 129 1 11 HELIX 9 AA9 ASP A 131 GLY A 143 1 13 HELIX 10 AB1 GLY A 143 GLY A 156 1 14 HELIX 11 AB2 PRO A 167 SER A 171 5 5 HELIX 12 AB3 THR A 182 LEU A 195 1 14 HELIX 13 AB4 GLN A 200 ASP A 213 1 14 HELIX 14 AB5 CYS A 220 LEU A 225 5 6 HELIX 15 AB6 SER A 271 GLY A 291 1 21 HELIX 16 AB7 ALA B 21 ALA B 30 1 10 HELIX 17 AB8 ASP B 32 CYS B 40 1 9 HELIX 18 AB9 CYS B 69 THR B 71 5 3 HELIX 19 AC1 PHE B 72 GLU B 85 1 14 HELIX 20 AC2 ALA B 89 ASP B 92 5 4 HELIX 21 AC3 GLY B 98 LEU B 102 5 5 HELIX 22 AC4 VAL B 108 ALA B 113 5 6 HELIX 23 AC5 VAL B 119 THR B 129 1 11 HELIX 24 AC6 ASP B 131 GLY B 143 1 13 HELIX 25 AC7 GLY B 144 SER B 155 1 12 HELIX 26 AC8 PRO B 167 SER B 171 5 5 HELIX 27 AC9 THR B 182 LEU B 195 1 14 HELIX 28 AD1 GLN B 200 ASP B 213 1 14 HELIX 29 AD2 CYS B 220 LEU B 225 5 6 HELIX 30 AD3 SER B 271 ILE B 290 1 20 SHEET 1 AA1 5 ARG A 56 HIS A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N VAL A 46 O HIS A 60 SHEET 3 AA1 5 TRP A 259 GLN A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 AA1 5 ALA A 243 PRO A 252 -1 N LEU A 250 O TRP A 259 SHEET 5 AA1 5 TRP A 229 SER A 237 -1 N ARG A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 PRO A 96 0 SHEET 2 AA3 2 ASP A 116 THR A 118 -1 O MET A 117 N VAL A 95 SHEET 1 AA4 5 ARG B 56 HIS B 60 0 SHEET 2 AA4 5 ARG B 43 ASP B 50 -1 N LEU B 48 O ILE B 57 SHEET 3 AA4 5 TRP B 259 GLN B 266 -1 O VAL B 260 N LEU B 49 SHEET 4 AA4 5 ALA B 243 PRO B 252 -1 N LEU B 250 O TRP B 259 SHEET 5 AA4 5 TRP B 229 SER B 237 -1 N ARG B 230 O TRP B 251 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 ARG B 94 PRO B 96 0 SHEET 2 AA6 2 ASP B 116 THR B 118 -1 O MET B 117 N VAL B 95 LINK OG SER B 70 B17 OK3 B 302 1555 1555 1.38 CISPEP 1 GLU A 166 PRO A 167 0 0.26 CISPEP 2 GLU B 166 PRO B 167 0 2.18 SITE 1 AC1 1 OK3 B 302 SITE 1 AC2 17 MET B 68 CYS B 69 THR B 71 PHE B 72 SITE 2 AC2 17 LYS B 73 SER B 130 ASN B 132 ASN B 170 SITE 3 AC2 17 LYS B 234 THR B 235 GLY B 236 SER B 237 SITE 4 AC2 17 GLY B 240 PGE B 301 HOH B 405 HOH B 422 SITE 5 AC2 17 HOH B 439 CRYST1 70.380 85.690 113.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008835 0.00000