HEADER RNA 11-MAR-17 5NEQ TITLE THE STRUCTURE OF THE G. VIOLACEUS GUANIDINE II RIBOSWITCH P1 STEM-LOOP TITLE 2 WITH AMINOGUANIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 4 ORGANISM_TAXID: 33072 KEYWDS GUANIDINE II RIBOSWITCH, STEM-LOOP, TETRA LOOP, DIMER, KEYWDS 2 AMINOGUANIDINE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,J.WANG,D.M.J.LILLEY REVDAT 6 17-JAN-24 5NEQ 1 LINK REVDAT 5 10-JUL-19 5NEQ 1 REMARK REVDAT 4 20-MAR-19 5NEQ 1 KEYWDS REMARK REVDAT 3 30-AUG-17 5NEQ 1 REMARK REVDAT 2 05-JUL-17 5NEQ 1 JRNL REVDAT 1 31-MAY-17 5NEQ 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL THE STRUCTURE OF THE GUANIDINE-II RIBOSWITCH. JRNL REF CELL CHEM BIOL V. 24 695 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28529131 JRNL DOI 10.1016/J.CHEMBIOL.2017.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 16376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6685 - 3.0712 0.99 2611 149 0.1638 0.1991 REMARK 3 2 3.0712 - 2.4379 0.99 2629 147 0.2284 0.2583 REMARK 3 3 2.4379 - 2.1297 0.99 2595 168 0.2333 0.2668 REMARK 3 4 2.1297 - 1.9350 0.99 2587 172 0.2953 0.4049 REMARK 3 5 1.9350 - 1.7963 0.97 2554 136 0.3656 0.3903 REMARK 3 6 1.7963 - 1.6904 0.94 2509 119 0.3914 0.3928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 443 REMARK 3 ANGLE : 1.777 689 REMARK 3 CHIRALITY : 0.067 88 REMARK 3 PLANARITY : 0.015 19 REMARK 3 DIHEDRAL : 9.694 204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2109 21.2140 14.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.3709 T22: 0.3157 REMARK 3 T33: 0.2839 T12: 0.0083 REMARK 3 T13: 0.0268 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.7494 L22: 2.8701 REMARK 3 L33: 2.6624 L12: 0.5164 REMARK 3 L13: 1.0772 L23: -3.1853 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0071 S13: -0.0214 REMARK 3 S21: 0.3585 S22: 0.0904 S23: -0.0355 REMARK 3 S31: -0.1918 S32: 0.1493 S33: -0.0510 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1149 18.6150 8.5246 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.2955 REMARK 3 T33: 0.2770 T12: -0.0373 REMARK 3 T13: -0.0012 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.7069 L22: 3.1781 REMARK 3 L33: 5.9986 L12: -2.2368 REMARK 3 L13: 3.7262 L23: -3.9459 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.1191 S13: 0.2648 REMARK 3 S21: 0.2501 S22: -0.2275 S23: -0.2569 REMARK 3 S31: -0.5007 S32: 0.4853 S33: 0.3861 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 38.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.13 REMARK 200 R MERGE (I) : 0.07160 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5NEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM ACETATE, 0.05 M MES REMARK 280 PH 5.6, 2.5 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 27.73150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 16.01079 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.42533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 27.73150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 16.01079 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.42533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 27.73150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 16.01079 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.42533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 27.73150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 16.01079 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.42533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 27.73150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 16.01079 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.42533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 27.73150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 16.01079 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.42533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 32.02158 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 86.85067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 32.02158 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 86.85067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 32.02158 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 86.85067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 32.02158 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.85067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 32.02158 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 86.85067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 32.02158 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 86.85067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -27.73150 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 16.01079 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.42533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 217 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 218 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 222 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 227 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 231 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 235 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' A A 16 O3P CBV A 17 0.36 REMARK 500 HO3' CBV A 17 P C A 18 0.79 REMARK 500 C3' A A 16 O3P CBV A 17 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 5 O5' - P - OP2 ANGL. DEV. = -6.8 DEGREES REMARK 500 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 235 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 110 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 7 O6 REMARK 620 2 G A 10 OP2 95.7 REMARK 620 3 HOH A 233 O 84.8 102.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP1 REMARK 620 2 HOH A 229 O 155.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 12 OP2 REMARK 620 2 C A 13 OP2 103.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 232 O 169.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGU A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 110 DBREF 5NEQ A 1 18 PDB 5NEQ 5NEQ 1 18 SEQRES 1 A 18 G G U G G G G A C G A C C SEQRES 2 A 18 C C A CBV C HET CBV A 17 33 HET AGU A 101 11 HET SO4 A 102 5 HET SO4 A 103 5 HET NA A 104 1 HET NA A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET NA A 109 1 HET NA A 110 1 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM AGU AMINOGUANIDINE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 1 CBV C9 H13 BR N3 O8 P FORMUL 2 AGU C H6 N4 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 NA 7(NA 1+) FORMUL 12 HOH *35(H2 O) LINK O3' A A 16 P CBV A 17 1555 1555 1.61 LINK O3' CBV A 17 P C A 18 1555 1555 1.60 LINK O6 G A 7 NA NA A 110 1555 1555 2.96 LINK OP1 A A 8 NA NA A 108 1555 1555 2.40 LINK OP2 G A 10 NA NA A 110 1555 1555 2.82 LINK OP2 C A 12 NA NA A 107 1555 1555 2.90 LINK OP2 C A 13 NA NA A 107 1555 1555 2.72 LINK NA NA A 104 O HOH A 201 1555 1555 2.83 LINK NA NA A 104 O HOH A 232 1555 1555 2.41 LINK NA NA A 108 O HOH A 229 1555 10455 2.43 LINK NA NA A 110 O HOH A 233 1555 1555 2.27 SITE 1 AC1 6 G A 7 A A 8 C A 9 G A 10 SITE 2 AC1 6 NA A 108 NA A 110 SITE 1 AC2 4 G A 2 U A 3 C A 15 HOH A 203 SITE 1 AC3 3 CBV A 17 HOH A 201 HOH A 219 SITE 1 AC4 3 C A 15 HOH A 201 HOH A 232 SITE 1 AC5 1 G A 2 SITE 1 AC6 2 C A 12 C A 13 SITE 1 AC7 4 A A 8 C A 9 AGU A 101 HOH A 229 SITE 1 AC8 1 G A 1 SITE 1 AC9 4 G A 7 G A 10 AGU A 101 HOH A 233 CRYST1 55.463 55.463 130.276 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018030 0.010410 0.000000 0.00000 SCALE2 0.000000 0.020819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007676 0.00000