HEADER SUGAR BINDING PROTEIN 11-MAR-17 5NES TITLE DISCOVERY, CRYSTAL STRUCTURES AND ATOMIC FORCE MICROSCOPY STUDY OF TITLE 2 THIOETHER LIGATED D,L-CYCLIC ANTIMICROBIAL PEPTIDES AGAINST MULTIDRUG TITLE 3 RESISTANT PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN II (PA-IIL); COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN PA-IIL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYD-TRP-TRD-LYS-LYD-LYS-LYD-LYS-TRD-TRP-CYD; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, PAERUG_E15_LONDON_28_01_14_00983, SOURCE 5 PAERUG_P32_LONDON_17_VIM_2_10_11_00423, PAMH19_1713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS CYCLIC PEPTIDES, ANTIMICROBIALS, PSEUDOMONAS AERUGINOSA, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.-L.REYMOND,T.DARBRE,A.STOCKER,W.HONG,C.VAN DELDEN,T.KOEHLER, AUTHOR 2 A.LUSCHER,R.VISINI,Y.FU,I.DI BONAVENTURA,R.HE REVDAT 4 17-JAN-24 5NES 1 REMARK REVDAT 3 29-JUL-20 5NES 1 REMARK LINK SITE REVDAT 2 06-DEC-17 5NES 1 JRNL REVDAT 1 13-SEP-17 5NES 0 JRNL AUTH R.HE,I.DI BONAVENTURA,R.VISINI,B.H.GAN,Y.FU,D.PROBST, JRNL AUTH 2 A.LUSCHER,T.KOHLER,C.VAN DELDEN,A.STOCKER,W.HONG,T.DARBRE, JRNL AUTH 3 J.L.REYMOND JRNL TITL DESIGN, CRYSTAL STRUCTURE AND ATOMIC FORCE MICROSCOPY STUDY JRNL TITL 2 OF THIOETHER LIGATED D,L-CYCLIC ANTIMICROBIAL PEPTIDES JRNL TITL 3 AGAINST MULTIDRUG RESISTANT PSEUDOMONAS AERUGINOSA. JRNL REF CHEM SCI V. 8 7464 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29163899 JRNL DOI 10.1039/C7SC01599B REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 51247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8056 - 4.2076 0.91 2720 143 0.1454 0.1420 REMARK 3 2 4.2076 - 3.3399 0.93 2769 145 0.1367 0.1289 REMARK 3 3 3.3399 - 2.9178 0.93 2795 148 0.1462 0.1849 REMARK 3 4 2.9178 - 2.6511 0.91 2694 141 0.1436 0.1654 REMARK 3 5 2.6511 - 2.4611 0.91 2761 146 0.1454 0.1774 REMARK 3 6 2.4611 - 2.3160 0.91 2711 142 0.1401 0.1674 REMARK 3 7 2.3160 - 2.2000 0.92 2719 143 0.1284 0.1521 REMARK 3 8 2.2000 - 2.1042 0.92 2750 145 0.1281 0.1558 REMARK 3 9 2.1042 - 2.0232 0.92 2744 145 0.1331 0.1519 REMARK 3 10 2.0232 - 1.9534 0.92 2777 146 0.1360 0.1750 REMARK 3 11 1.9534 - 1.8923 0.93 2777 147 0.1416 0.1667 REMARK 3 12 1.8923 - 1.8382 0.93 2780 146 0.1483 0.1733 REMARK 3 13 1.8382 - 1.7898 0.91 2703 142 0.1501 0.1986 REMARK 3 14 1.7898 - 1.7462 0.92 2746 145 0.1514 0.1855 REMARK 3 15 1.7462 - 1.7065 0.92 2754 145 0.1643 0.1853 REMARK 3 16 1.7065 - 1.6701 0.91 2715 142 0.1557 0.1889 REMARK 3 17 1.6701 - 1.6367 0.91 2756 145 0.1578 0.1854 REMARK 3 18 1.6367 - 1.6058 0.67 2015 105 0.1539 0.2189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3475 REMARK 3 ANGLE : 0.918 4770 REMARK 3 CHIRALITY : 0.064 603 REMARK 3 PLANARITY : 0.004 627 REMARK 3 DIHEDRAL : 12.739 1950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.036790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.606 REMARK 200 RESOLUTION RANGE LOW (A) : 47.784 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 1.780 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.32 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005 M COBALT(II) CHLORIDE REMARK 280 HEXAHYDRATE, 0.1M HEPES, 12% POLYETHYLENE GLYCOL 3350,, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 LYS E 4 CG CD CE NZ REMARK 470 DLY E 5 CG CD CE NZ REMARK 470 LYS E 6 CG CD CE NZ REMARK 470 DLY E 7 CG CD CE NZ REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ARG B 72 CD NE CZ NH1 NH2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 ARG C 72 CD NE CZ NH1 NH2 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 ARG D 72 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 100 O HOH C 301 2.07 REMARK 500 O HOH B 302 O HOH B 313 2.09 REMARK 500 O HOH C 302 O HOH C 320 2.10 REMARK 500 O HOH A 508 O HOH A 536 2.13 REMARK 500 NE2 GLN A 66 O HOH A 401 2.14 REMARK 500 O HOH D 347 O HOH D 350 2.15 REMARK 500 O HOH A 419 O HOH A 511 2.17 REMARK 500 O HOH A 425 O HOH A 480 2.17 REMARK 500 OE1 GLN C 43 O HOH C 302 2.19 REMARK 500 O HOH A 467 O HOH A 472 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 515 O HOH D 419 1565 2.02 REMARK 500 O HOH E 306 O HOH C 410 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DTR E 3 CG DTR E 3 CD2 0.121 REMARK 500 DTR E 3 CE2 DTR E 3 CD2 0.088 REMARK 500 DTR E 9 CG DTR E 9 CD2 0.112 REMARK 500 DTR E 9 CE2 DTR E 9 CD2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DTR E 3 CD1 - NE1 - CE2 ANGL. DEV. = 10.9 DEGREES REMARK 500 DTR E 3 CE2 - CD2 - CG ANGL. DEV. = -6.6 DEGREES REMARK 500 DTR E 3 CG - CD2 - CE3 ANGL. DEV. = 9.0 DEGREES REMARK 500 DTR E 9 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DTR E 9 CD1 - NE1 - CE2 ANGL. DEV. = 11.3 DEGREES REMARK 500 DTR E 9 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 DTR E 9 CG - CD2 - CE3 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 38.84 37.74 REMARK 500 ASN A 85 19.41 59.93 REMARK 500 GLU A 86 -37.64 -138.13 REMARK 500 LYS E 8 34.65 -170.95 REMARK 500 DTR E 9 -127.81 22.26 REMARK 500 ASN B 47 31.93 70.51 REMARK 500 THR B 84 39.25 35.39 REMARK 500 GLU B 86 -40.04 -144.44 REMARK 500 THR C 84 39.50 38.56 REMARK 500 GLU C 86 -28.93 -140.37 REMARK 500 THR D 84 39.53 38.35 REMARK 500 GLU D 86 -37.43 -141.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZDC A 304 REMARK 610 ZDC B 201 REMARK 610 ZDC B 205 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 143.7 REMARK 620 3 ASP A 101 OD2 152.8 44.7 REMARK 620 4 ASN A 103 OD1 86.8 69.5 73.6 REMARK 620 5 ASP A 104 OD1 82.9 70.0 114.7 89.0 REMARK 620 6 ZDC A 305 O3 132.8 64.6 73.5 134.1 76.8 REMARK 620 7 ZDC A 305 O2 77.5 130.4 116.1 159.7 101.6 65.9 REMARK 620 8 GLY C 114 O 78.5 124.8 81.6 86.4 161.1 119.0 78.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.0 REMARK 620 3 ASP A 99 OD1 86.3 81.6 REMARK 620 4 ASP A 101 OD1 75.7 127.5 85.2 REMARK 620 5 ASP A 104 OD1 115.4 130.0 148.0 78.5 REMARK 620 6 ASP A 104 OD2 81.9 79.3 160.9 106.3 51.1 REMARK 620 7 ZDC A 305 O3 148.5 146.3 77.0 76.4 72.5 120.1 REMARK 620 8 ZDC A 305 O4 141.7 89.9 98.3 142.4 79.3 82.1 68.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ZDC A 304 O3 119.0 REMARK 620 3 ZDC A 304 O2 78.2 65.0 REMARK 620 4 ASN C 21 O 79.0 132.0 77.8 REMARK 620 5 ASP C 101 OD1 126.1 64.0 129.0 143.2 REMARK 620 6 ASP C 101 OD2 82.0 73.8 116.1 153.4 45.4 REMARK 620 7 ASN C 103 OD1 89.0 132.9 162.0 87.4 68.9 73.9 REMARK 620 8 ASP C 104 OD1 159.2 77.1 99.4 80.3 71.5 116.8 88.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ZDC A 304 O3 REMARK 620 2 ZDC A 304 O4 67.1 REMARK 620 3 GLU C 95 OE1 150.2 140.2 REMARK 620 4 GLU C 95 OE2 145.3 87.5 53.3 REMARK 620 5 ASP C 99 OD1 75.9 94.5 88.0 83.2 REMARK 620 6 ASP C 101 OD1 74.7 140.5 79.2 131.4 85.4 REMARK 620 7 ASP C 104 OD1 72.2 80.1 116.8 128.4 147.2 79.1 REMARK 620 8 ASP C 104 OD2 119.1 82.3 82.9 78.0 161.1 108.9 50.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 21 O REMARK 620 2 ASP B 101 OD1 142.2 REMARK 620 3 ASP B 101 OD2 153.0 45.2 REMARK 620 4 ASN B 103 OD1 86.1 68.4 74.4 REMARK 620 5 ASP B 104 OD1 82.1 70.1 115.0 88.0 REMARK 620 6 ZDC B 201 O2 78.3 131.2 115.5 160.1 101.9 REMARK 620 7 ZDC B 201 O3 133.8 64.8 72.5 133.1 77.2 66.5 REMARK 620 8 GLY D 114 O 78.6 125.5 82.1 87.9 160.5 76.9 118.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.9 REMARK 620 3 ASP B 99 OD1 87.1 79.5 REMARK 620 4 ASP B 101 OD1 78.0 130.4 87.6 REMARK 620 5 ASP B 104 OD1 117.9 132.4 146.7 77.6 REMARK 620 6 ASP B 104 OD2 84.2 81.9 161.2 106.8 51.0 REMARK 620 7 ZDC B 201 O3 148.5 143.0 75.4 75.4 72.1 119.4 REMARK 620 8 ZDC B 201 O4 140.8 87.8 94.5 141.2 79.8 82.0 67.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 114 O REMARK 620 2 ZDC B 205 O2 78.6 REMARK 620 3 ZDC B 205 O3 118.3 65.5 REMARK 620 4 ASN D 21 O 80.2 75.6 130.6 REMARK 620 5 ASP D 101 OD1 123.5 129.2 63.9 145.7 REMARK 620 6 ASP D 101 OD2 79.8 116.8 74.7 153.5 44.6 REMARK 620 7 ASN D 103 OD1 87.4 160.9 133.3 89.4 69.5 72.6 REMARK 620 8 ASP D 104 OD1 161.9 100.7 76.7 82.1 71.0 115.7 88.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ZDC B 205 O3 REMARK 620 2 ZDC B 205 O4 66.4 REMARK 620 3 GLU D 95 OE1 153.2 138.4 REMARK 620 4 GLU D 95 OE2 142.5 86.0 53.6 REMARK 620 5 ASP D 99 OD1 76.5 95.0 89.1 81.4 REMARK 620 6 ASP D 101 OD1 76.8 142.0 79.6 131.2 85.1 REMARK 620 7 ASP D 104 OD1 71.6 79.0 116.8 129.5 147.3 80.8 REMARK 620 8 ASP D 104 OD2 118.3 81.5 81.5 79.7 160.9 109.3 50.7 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 5NES A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NES A A0A069Q9V4 2 115 DBREF 5NES E 1 11 PDB 5NES 5NES 1 11 DBREF1 5NES B 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NES B A0A069Q9V4 2 115 DBREF1 5NES C 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NES C A0A069Q9V4 2 115 DBREF1 5NES D 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NES D A0A069Q9V4 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 E 11 DCY TRP DTR LYS DLY LYS DLY LYS DTR TRP DCY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET DCY E 1 6 HET DTR E 3 14 HET DLY E 5 5 HET DLY E 7 5 HET DTR E 9 14 HET DCY E 11 6 HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET ZDC A 304 13 HET ZDC A 305 13 HET 8VH E 101 8 HET ZDC B 201 13 HET CA B 202 1 HET CA B 203 1 HET CA B 204 1 HET ZDC B 205 13 HET CA C 201 1 HET CA D 201 1 HETNAM DCY D-CYSTEINE HETNAM DTR D-TRYPTOPHAN HETNAM DLY D-LYSINE HETNAM CA CALCIUM ION HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID HETNAM 8VH 1,3-DIMETHYLBENZENE FORMUL 2 DCY 2(C3 H7 N O2 S) FORMUL 2 DTR 2(C11 H12 N2 O2) FORMUL 2 DLY 2(C6 H14 N2 O2) FORMUL 6 CA 8(CA 2+) FORMUL 9 ZDC 4(C8 H14 O6) FORMUL 11 8VH C8 H10 FORMUL 19 HOH *572(H2 O) SHEET 1 A 4 VAL A 5 THR A 7 0 SHEET 2 A 4 LYS A 62 SER A 68 -1 SHEET 3 A 4 GLN A 26 VAL A 32 -1 SHEET 4 A 4 GLU A 35 GLY A 42 -1 SHEET 1 B 5 ASP A 75 LEU A 83 0 SHEET 2 B 5 LEU A 87 GLU A 95 -1 SHEET 3 B 5 ALA A 105 TRP A 111 -1 SHEET 4 B 5 ARG A 13 ALA A 20 -1 SHEET 5 B 5 ALA A 48 ASN A 56 -1 SHEET 1 C 4 VAL B 5 THR B 7 0 SHEET 2 C 4 LYS B 62 VAL B 69 -1 SHEET 3 C 4 GLN B 26 VAL B 32 -1 SHEET 4 C 4 GLU B 35 GLY B 42 -1 SHEET 1 D 5 ASP B 75 LEU B 83 0 SHEET 2 D 5 LEU B 87 GLU B 95 -1 SHEET 3 D 5 ALA B 105 TRP B 111 -1 SHEET 4 D 5 ARG B 13 ALA B 20 -1 SHEET 5 D 5 ALA B 48 ASN B 56 -1 SHEET 1 E 4 VAL C 5 THR C 7 0 SHEET 2 E 4 LYS C 62 SER C 68 -1 SHEET 3 E 4 GLN C 26 VAL C 32 -1 SHEET 4 E 4 GLU C 35 GLY C 42 -1 SHEET 1 F 5 ASP C 75 LEU C 83 0 SHEET 2 F 5 LEU C 87 GLU C 95 -1 SHEET 3 F 5 ALA C 105 TRP C 111 -1 SHEET 4 F 5 ARG C 13 ALA C 20 -1 SHEET 5 F 5 ALA C 48 ASN C 56 -1 SHEET 1 G 4 VAL D 5 THR D 7 0 SHEET 2 G 4 LYS D 62 VAL D 69 -1 SHEET 3 G 4 GLN D 26 VAL D 32 -1 SHEET 4 G 4 GLU D 35 GLY D 42 -1 SHEET 1 H 5 ASP D 75 LEU D 83 0 SHEET 2 H 5 LEU D 87 GLU D 95 -1 SHEET 3 H 5 ALA D 105 TRP D 111 -1 SHEET 4 H 5 ARG D 13 ALA D 20 -1 SHEET 5 H 5 ALA D 48 ASN D 56 -1 LINK C7 ZDC A 305 N DCY E 1 1555 1555 1.39 LINK C DCY E 1 N TRP E 2 1555 1555 1.33 LINK SG DCY E 1 C08 8VH E 101 1555 1555 1.85 LINK C TRP E 2 N DTR E 3 1555 1555 1.33 LINK C DTR E 3 N LYS E 4 1555 1555 1.33 LINK C LYS E 4 N DLY E 5 1555 1555 1.33 LINK C DLY E 5 N LYS E 6 1555 1555 1.33 LINK C LYS E 6 N DLY E 7 1555 1555 1.33 LINK C DLY E 7 N LYS E 8 1555 1555 1.33 LINK C LYS E 8 N DTR E 9 1555 1555 1.34 LINK C DTR E 9 N TRP E 10 1555 1555 1.33 LINK C TRP E 10 N DCY E 11 1555 1555 1.33 LINK SG DCY E 11 C07 8VH E 101 1555 1555 1.92 LINK O ASN A 21 CA CA A 302 1555 1555 2.36 LINK OE1 GLU A 95 CA CA A 301 1555 1555 2.52 LINK OE2 GLU A 95 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 99 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 101 CA CA A 302 1555 1555 3.10 LINK OD2 ASP A 101 CA CA A 302 1555 1555 2.44 LINK OD1 ASN A 103 CA CA A 302 1555 1555 2.35 LINK OD1 ASP A 104 CA CA A 301 1555 1555 2.64 LINK OD2 ASP A 104 CA CA A 301 1555 1555 2.40 LINK OD1 ASP A 104 CA CA A 302 1555 1555 2.39 LINK O GLY A 114 CA CA A 303 1555 1555 2.50 LINK CA CA A 301 O3 ZDC A 305 1555 1555 2.48 LINK CA CA A 301 O4 ZDC A 305 1555 1555 2.47 LINK CA CA A 302 O3 ZDC A 305 1555 1555 2.49 LINK CA CA A 302 O2 ZDC A 305 1555 1555 2.48 LINK CA CA A 302 O GLY C 114 1555 1555 2.49 LINK CA CA A 303 O3 ZDC A 304 1555 1555 2.46 LINK CA CA A 303 O2 ZDC A 304 1555 1555 2.49 LINK CA CA A 303 O ASN C 21 1555 1555 2.40 LINK CA CA A 303 OD1 ASP C 101 1555 1555 3.05 LINK CA CA A 303 OD2 ASP C 101 1555 1555 2.43 LINK CA CA A 303 OD1 ASN C 103 1555 1555 2.30 LINK CA CA A 303 OD1 ASP C 104 1555 1555 2.40 LINK O3 ZDC A 304 CA CA C 201 1555 1555 2.49 LINK O4 ZDC A 304 CA CA C 201 1555 1555 2.47 LINK O ASN B 21 CA CA B 203 1555 1555 2.38 LINK OE1 GLU B 95 CA CA B 202 1555 1555 2.44 LINK OE2 GLU B 95 CA CA B 202 1555 1555 2.40 LINK OD1 ASP B 99 CA CA B 202 1555 1555 2.41 LINK OD1 ASP B 101 CA CA B 202 1555 1555 2.42 LINK OD1 ASP B 101 CA CA B 203 1555 1555 3.07 LINK OD2 ASP B 101 CA CA B 203 1555 1555 2.43 LINK OD1 ASN B 103 CA CA B 203 1555 1555 2.34 LINK OD1 ASP B 104 CA CA B 202 1555 1555 2.64 LINK OD2 ASP B 104 CA CA B 202 1555 1555 2.40 LINK OD1 ASP B 104 CA CA B 203 1555 1555 2.38 LINK O GLY B 114 CA CA B 204 1555 1555 2.49 LINK O3 ZDC B 201 CA CA B 202 1555 1555 2.50 LINK O4 ZDC B 201 CA CA B 202 1555 1555 2.50 LINK O2 ZDC B 201 CA CA B 203 1555 1555 2.49 LINK O3 ZDC B 201 CA CA B 203 1555 1555 2.48 LINK CA CA B 203 O GLY D 114 1555 1555 2.49 LINK CA CA B 204 O2 ZDC B 205 1555 1555 2.51 LINK CA CA B 204 O3 ZDC B 205 1555 1555 2.47 LINK CA CA B 204 O ASN D 21 1555 1555 2.42 LINK CA CA B 204 OD1 ASP D 101 1555 1555 3.10 LINK CA CA B 204 OD2 ASP D 101 1555 1555 2.44 LINK CA CA B 204 OD1 ASN D 103 1555 1555 2.36 LINK CA CA B 204 OD1 ASP D 104 1555 1555 2.38 LINK O3 ZDC B 205 CA CA D 201 1555 1555 2.48 LINK O4 ZDC B 205 CA CA D 201 1555 1555 2.51 LINK OE1 GLU C 95 CA CA C 201 1555 1555 2.47 LINK OE2 GLU C 95 CA CA C 201 1555 1555 2.42 LINK OD1 ASP C 99 CA CA C 201 1555 1555 2.39 LINK OD1 ASP C 101 CA CA C 201 1555 1555 2.40 LINK OD1 ASP C 104 CA CA C 201 1555 1555 2.66 LINK OD2 ASP C 104 CA CA C 201 1555 1555 2.42 LINK OE1 GLU D 95 CA CA D 201 1555 1555 2.45 LINK OE2 GLU D 95 CA CA D 201 1555 1555 2.42 LINK OD1 ASP D 99 CA CA D 201 1555 1555 2.37 LINK OD1 ASP D 101 CA CA D 201 1555 1555 2.33 LINK OD1 ASP D 104 CA CA D 201 1555 1555 2.65 LINK OD2 ASP D 104 CA CA D 201 1555 1555 2.43 CISPEP 1 TRP A 111 PRO A 112 0 -5.17 CISPEP 2 TRP B 111 PRO B 112 0 -2.85 CISPEP 3 TRP C 111 PRO C 112 0 -3.37 CISPEP 4 TRP D 111 PRO D 112 0 -2.99 CRYST1 45.201 48.527 52.562 84.92 79.98 80.61 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022123 -0.003661 -0.003689 0.00000 SCALE2 0.000000 0.020887 -0.001294 0.00000 SCALE3 0.000000 0.000000 0.019357 0.00000