data_5NEW # _entry.id 5NEW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NEW WWPDB D_1200003993 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NEW _pdbx_database_status.recvd_initial_deposition_date 2017-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schulz, E.C.' 1 ? 'Barabas, O.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 9903 _citation.page_last 9903 _citation.title 'Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-017-10085-8 _citation.pdbx_database_id_PubMed 28852099 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schulz, E.C.' 1 ? primary 'Seiler, M.' 2 ? primary 'Zuliani, C.' 3 ? primary 'Voigt, F.' 4 ? primary 'Rybin, V.' 5 ? primary 'Pogenberg, V.' 6 ? primary 'Mucke, N.' 7 ? primary 'Wilmanns, M.' 8 ? primary 'Gibson, T.J.' 9 ? primary 'Barabas, O.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5NEW _cell.details ? _cell.formula_units_Z ? _cell.length_a 66.880 _cell.length_a_esd ? _cell.length_b 66.880 _cell.length_b_esd ? _cell.length_c 227.720 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA-binding protein Hfq' 11179.354 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') ; 1930.277 1 ? ? ? ? 3 polymer nat ;RNA (5'-R(P*UP*U)-3') ; 567.374 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTS SNYHHGSSAQNTSAQQDSEETE ; ;MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTS SNYHHGSSAQNTSAQQDSEETE ; A,B ? 2 polyribonucleotide no no AAAAAA AAAAAA H ? 3 polyribonucleotide no no UU UU C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 GLY n 1 5 GLN n 1 6 SER n 1 7 LEU n 1 8 GLN n 1 9 ASP n 1 10 PRO n 1 11 PHE n 1 12 LEU n 1 13 ASN n 1 14 ALA n 1 15 LEU n 1 16 ARG n 1 17 ARG n 1 18 GLU n 1 19 ARG n 1 20 VAL n 1 21 PRO n 1 22 VAL n 1 23 SER n 1 24 ILE n 1 25 TYR n 1 26 LEU n 1 27 VAL n 1 28 ASN n 1 29 GLY n 1 30 ILE n 1 31 LYS n 1 32 LEU n 1 33 GLN n 1 34 GLY n 1 35 GLN n 1 36 ILE n 1 37 GLU n 1 38 SER n 1 39 PHE n 1 40 ASP n 1 41 GLN n 1 42 PHE n 1 43 VAL n 1 44 ILE n 1 45 LEU n 1 46 LEU n 1 47 LYS n 1 48 ASN n 1 49 THR n 1 50 VAL n 1 51 SER n 1 52 GLN n 1 53 MET n 1 54 VAL n 1 55 TYR n 1 56 LYS n 1 57 HIS n 1 58 ALA n 1 59 ILE n 1 60 SER n 1 61 THR n 1 62 VAL n 1 63 VAL n 1 64 PRO n 1 65 SER n 1 66 ARG n 1 67 PRO n 1 68 VAL n 1 69 SER n 1 70 HIS n 1 71 HIS n 1 72 SER n 1 73 ASN n 1 74 ASN n 1 75 ALA n 1 76 GLY n 1 77 GLY n 1 78 GLY n 1 79 THR n 1 80 SER n 1 81 SER n 1 82 ASN n 1 83 TYR n 1 84 HIS n 1 85 HIS n 1 86 GLY n 1 87 SER n 1 88 SER n 1 89 ALA n 1 90 GLN n 1 91 ASN n 1 92 THR n 1 93 SER n 1 94 ALA n 1 95 GLN n 1 96 GLN n 1 97 ASP n 1 98 SER n 1 99 GLU n 1 100 GLU n 1 101 THR n 1 102 GLU n 2 1 A n 2 2 A n 2 3 A n 2 4 A n 2 5 A n 2 6 A n 3 1 U n 3 2 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'hfq, ECS88_4758' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli S88' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 585035 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 2 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Escherichia coli' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP HFQ_ECO45 B7MKX6 ? 1 ;MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTS SNYHHGSSAQNTSAQQDSEETE ; 1 2 PDB 5NEW 5NEW ? 2 ? 1 3 PDB 5NEW 5NEW ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NEW A 1 ? 102 ? B7MKX6 1 ? 102 ? 1 102 2 1 5NEW B 1 ? 102 ? B7MKX6 1 ? 102 ? 1 102 3 2 5NEW H 1 ? 6 ? 5NEW 4 ? 9 ? 4 9 4 3 5NEW C 1 ? 2 ? 5NEW 0 ? 1 ? 0 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NEW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M phosphate-citrate buffer pH 4.2, 27% PEG 1000, and 0.2 M LiSO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-12-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979681 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979681 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NEW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.51 _reflns.d_resolution_low 40.6 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6816 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.03 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] -10.6352 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -10.6352 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 21.2704 _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NEW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.511 _refine.ls_d_res_low 40.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6816 _refine.ls_number_reflns_R_free 341 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.69 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1993 _refine.ls_R_factor_R_free 0.2522 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1964 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 44.329 _refine.solvent_model_param_ksol 0.392 _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.65 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1020 _refine_hist.pdbx_number_atoms_nucleic_acid 172 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1261 _refine_hist.d_res_high 2.511 _refine_hist.d_res_low 40.60 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 1252 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.095 ? 1733 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.530 ? 483 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.067 ? 210 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 187 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.5105 3.1628 . . 163 3088 94.00 . . . 0.2920 . 0.2233 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1628 40.6063 . . 178 3387 99.00 . . . 0.2363 . 0.1863 . . . . . . . . . . # _struct.entry_id 5NEW _struct.title 'RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer' _struct.pdbx_descriptor 'RNA-binding protein Hfq/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NEW _struct_keywords.text 'Hfq sRNA RNA-RNA interaction base stacking, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 7 ? GLU A 18 ? LEU A 7 GLU A 18 1 ? 12 HELX_P HELX_P2 AA2 LEU B 7 ? GLU B 18 ? LEU B 7 GLU B 18 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 51 ? TYR A 55 ? SER A 51 TYR A 55 AA1 2 VAL A 43 ? LYS A 47 ? VAL A 43 LYS A 47 AA1 3 LYS A 31 ? PHE A 39 ? LYS A 31 PHE A 39 AA1 4 PRO A 21 ? LEU A 26 ? PRO A 21 LEU A 26 AA1 5 ILE A 59 ? PRO A 64 ? ILE A 59 PRO A 64 AA1 6 SER B 51 ? TYR B 55 ? SER B 51 TYR B 55 AA1 7 VAL B 43 ? LYS B 47 ? VAL B 43 LYS B 47 AA1 8 LYS B 31 ? PHE B 39 ? LYS B 31 PHE B 39 AA1 9 PRO B 21 ? LEU B 26 ? PRO B 21 LEU B 26 AA1 10 ILE B 59 ? PRO B 64 ? ILE B 59 PRO B 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 54 ? O VAL A 54 N ILE A 44 ? N ILE A 44 AA1 2 3 O LEU A 45 ? O LEU A 45 N SER A 38 ? N SER A 38 AA1 3 4 O LEU A 32 ? O LEU A 32 N ILE A 24 ? N ILE A 24 AA1 4 5 N SER A 23 ? N SER A 23 O VAL A 63 ? O VAL A 63 AA1 5 6 N SER A 60 ? N SER A 60 O TYR B 55 ? O TYR B 55 AA1 6 7 O VAL B 54 ? O VAL B 54 N ILE B 44 ? N ILE B 44 AA1 7 8 O LEU B 45 ? O LEU B 45 N SER B 38 ? N SER B 38 AA1 8 9 O LEU B 32 ? O LEU B 32 N ILE B 24 ? N ILE B 24 AA1 9 10 N SER B 23 ? N SER B 23 O VAL B 63 ? O VAL B 63 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 3 'binding site for residue SO4 A 201' AC2 Software A SO4 202 ? 2 'binding site for residue SO4 A 202' AC3 Software B SO4 201 ? 5 'binding site for residue SO4 B 201' AC4 Software B SO4 202 ? 5 'binding site for residue SO4 B 202' AC5 Software B SO4 203 ? 2 'binding site for residue SO4 B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 23 ? SER A 23 . ? 1_555 ? 2 AC1 3 TYR A 25 ? TYR A 25 . ? 1_555 ? 3 AC1 3 HOH J . ? HOH A 302 . ? 1_555 ? 4 AC2 2 ARG A 16 ? ARG A 16 . ? 1_555 ? 5 AC2 2 ARG A 17 ? ARG A 17 . ? 1_555 ? 6 AC3 5 PRO A 67 ? PRO A 67 . ? 1_555 ? 7 AC3 5 LYS B 47 ? LYS B 47 . ? 1_555 ? 8 AC3 5 VAL B 50 ? VAL B 50 . ? 1_555 ? 9 AC3 5 SER B 51 ? SER B 51 . ? 1_555 ? 10 AC3 5 HOH K . ? HOH B 303 . ? 1_555 ? 11 AC4 5 SER B 23 ? SER B 23 . ? 1_555 ? 12 AC4 5 TYR B 25 ? TYR B 25 . ? 1_555 ? 13 AC4 5 LYS B 31 ? LYS B 31 . ? 1_555 ? 14 AC4 5 HOH K . ? HOH B 309 . ? 1_555 ? 15 AC4 5 HOH K . ? HOH B 310 . ? 1_555 ? 16 AC5 2 ASN B 13 ? ASN B 13 . ? 1_555 ? 17 AC5 2 ARG B 17 ? ARG B 17 . ? 1_555 ? # _atom_sites.entry_id 5NEW _atom_sites.fract_transf_matrix[1][1] 0.014952 _atom_sites.fract_transf_matrix[1][2] 0.008633 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017265 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004391 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 SER 69 69 ? ? ? A . n A 1 70 HIS 70 70 ? ? ? A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 SER 72 72 ? ? ? A . n A 1 73 ASN 73 73 ? ? ? A . n A 1 74 ASN 74 74 ? ? ? A . n A 1 75 ALA 75 75 ? ? ? A . n A 1 76 GLY 76 76 ? ? ? A . n A 1 77 GLY 77 77 ? ? ? A . n A 1 78 GLY 78 78 ? ? ? A . n A 1 79 THR 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 SER 81 81 ? ? ? A . n A 1 82 ASN 82 82 ? ? ? A . n A 1 83 TYR 83 83 ? ? ? A . n A 1 84 HIS 84 84 ? ? ? A . n A 1 85 HIS 85 85 ? ? ? A . n A 1 86 GLY 86 86 ? ? ? A . n A 1 87 SER 87 87 ? ? ? A . n A 1 88 SER 88 88 ? ? ? A . n A 1 89 ALA 89 89 ? ? ? A . n A 1 90 GLN 90 90 ? ? ? A . n A 1 91 ASN 91 91 ? ? ? A . n A 1 92 THR 92 92 ? ? ? A . n A 1 93 SER 93 93 ? ? ? A . n A 1 94 ALA 94 94 ? ? ? A . n A 1 95 GLN 95 95 ? ? ? A . n A 1 96 GLN 96 96 ? ? ? A . n A 1 97 ASP 97 97 ? ? ? A . n A 1 98 SER 98 98 ? ? ? A . n A 1 99 GLU 99 99 ? ? ? A . n A 1 100 GLU 100 100 ? ? ? A . n A 1 101 THR 101 101 ? ? ? A . n A 1 102 GLU 102 102 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ALA 2 2 ? ? ? B . n B 1 3 LYS 3 3 ? ? ? B . n B 1 4 GLY 4 4 ? ? ? B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 ASP 9 9 9 ASP ASP B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 PHE 11 11 11 PHE PHE B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 ARG 19 19 19 ARG ARG B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 TYR 25 25 25 TYR TYR B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 ASN 28 28 28 ASN ASN B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 GLN 33 33 33 GLN GLN B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 ILE 36 36 36 ILE ILE B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 PHE 42 42 42 PHE PHE B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 LEU 45 45 45 LEU LEU B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 ASN 48 48 48 ASN ASN B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 VAL 50 50 50 VAL VAL B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 GLN 52 52 52 GLN GLN B . n B 1 53 MET 53 53 53 MET MET B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 TYR 55 55 55 TYR TYR B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 HIS 57 57 57 HIS HIS B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 SER 60 60 60 SER SER B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 VAL 62 62 62 VAL VAL B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 PRO 64 64 64 PRO PRO B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 ARG 66 66 66 ARG ARG B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 SER 69 69 ? ? ? B . n B 1 70 HIS 70 70 ? ? ? B . n B 1 71 HIS 71 71 ? ? ? B . n B 1 72 SER 72 72 ? ? ? B . n B 1 73 ASN 73 73 ? ? ? B . n B 1 74 ASN 74 74 ? ? ? B . n B 1 75 ALA 75 75 ? ? ? B . n B 1 76 GLY 76 76 ? ? ? B . n B 1 77 GLY 77 77 ? ? ? B . n B 1 78 GLY 78 78 ? ? ? B . n B 1 79 THR 79 79 ? ? ? B . n B 1 80 SER 80 80 ? ? ? B . n B 1 81 SER 81 81 ? ? ? B . n B 1 82 ASN 82 82 ? ? ? B . n B 1 83 TYR 83 83 ? ? ? B . n B 1 84 HIS 84 84 ? ? ? B . n B 1 85 HIS 85 85 ? ? ? B . n B 1 86 GLY 86 86 ? ? ? B . n B 1 87 SER 87 87 ? ? ? B . n B 1 88 SER 88 88 ? ? ? B . n B 1 89 ALA 89 89 ? ? ? B . n B 1 90 GLN 90 90 ? ? ? B . n B 1 91 ASN 91 91 ? ? ? B . n B 1 92 THR 92 92 ? ? ? B . n B 1 93 SER 93 93 ? ? ? B . n B 1 94 ALA 94 94 ? ? ? B . n B 1 95 GLN 95 95 ? ? ? B . n B 1 96 GLN 96 96 ? ? ? B . n B 1 97 ASP 97 97 ? ? ? B . n B 1 98 SER 98 98 ? ? ? B . n B 1 99 GLU 99 99 ? ? ? B . n B 1 100 GLU 100 100 ? ? ? B . n B 1 101 THR 101 101 ? ? ? B . n B 1 102 GLU 102 102 ? ? ? B . n C 2 1 A 1 4 4 A Ar H . n C 2 2 A 2 5 5 A Ar H . n C 2 3 A 3 6 6 A Ar H . n C 2 4 A 4 7 7 A Ar H . n C 2 5 A 5 8 8 A Ar H . n C 2 6 A 6 9 9 A Ar H . n D 3 1 U 1 0 0 U Ur C . n D 3 2 U 2 1 1 U Ur C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 1 201 3 SO4 SO4 A . F 4 SO4 1 202 4 SO4 SO4 A . G 4 SO4 1 201 1 SO4 SO4 B . H 4 SO4 1 202 2 SO4 SO4 B . I 4 SO4 1 203 5 SO4 SO4 B . J 5 HOH 1 301 22 HOH HOH A . J 5 HOH 2 302 21 HOH HOH A . J 5 HOH 3 303 34 HOH HOH A . J 5 HOH 4 304 1 HOH HOH A . J 5 HOH 5 305 16 HOH HOH A . J 5 HOH 6 306 4 HOH HOH A . J 5 HOH 7 307 8 HOH HOH A . J 5 HOH 8 308 40 HOH HOH A . J 5 HOH 9 309 44 HOH HOH A . J 5 HOH 10 310 25 HOH HOH A . J 5 HOH 11 311 18 HOH HOH A . J 5 HOH 12 312 37 HOH HOH A . J 5 HOH 13 313 32 HOH HOH A . J 5 HOH 14 314 30 HOH HOH A . J 5 HOH 15 315 17 HOH HOH A . J 5 HOH 16 316 27 HOH HOH A . J 5 HOH 17 317 33 HOH HOH A . K 5 HOH 1 301 3 HOH HOH B . K 5 HOH 2 302 2 HOH HOH B . K 5 HOH 3 303 12 HOH HOH B . K 5 HOH 4 304 10 HOH HOH B . K 5 HOH 5 305 31 HOH HOH B . K 5 HOH 6 306 23 HOH HOH B . K 5 HOH 7 307 6 HOH HOH B . K 5 HOH 8 308 29 HOH HOH B . K 5 HOH 9 309 26 HOH HOH B . K 5 HOH 10 310 28 HOH HOH B . K 5 HOH 11 311 20 HOH HOH B . K 5 HOH 12 312 24 HOH HOH B . K 5 HOH 13 313 5 HOH HOH B . K 5 HOH 14 314 42 HOH HOH B . K 5 HOH 15 315 7 HOH HOH B . K 5 HOH 16 316 35 HOH HOH B . K 5 HOH 17 317 43 HOH HOH B . K 5 HOH 18 318 19 HOH HOH B . K 5 HOH 19 319 38 HOH HOH B . K 5 HOH 20 320 11 HOH HOH B . K 5 HOH 21 321 36 HOH HOH B . K 5 HOH 22 322 39 HOH HOH B . L 5 HOH 1 101 15 HOH HOH H . L 5 HOH 2 102 9 HOH HOH H . L 5 HOH 3 103 13 HOH HOH H . L 5 HOH 4 104 41 HOH HOH H . M 5 HOH 1 101 14 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 20800 ? 1 MORE -293 ? 1 'SSA (A^2)' 17280 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 100.3200000000 0.8660254038 -0.5000000000 0.0000000000 57.9197790051 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 115.8395580102 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-04 2 'Structure model' 1 1 2019-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category reflns_shell # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.7.3_928 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 B GLU 37 ? ? OG B SER 51 ? ? 1.93 2 1 O A HOH 313 ? ? O A HOH 317 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 P H A 4 ? ? 1_555 "O3'" H A 9 ? ? 3_675 1.62 2 1 "O5'" H A 4 ? ? 1_555 "O3'" H A 9 ? ? 3_675 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? -174.67 -178.83 2 1 LEU A 7 ? ? -147.32 -28.09 3 1 ASP A 40 ? ? -130.87 -148.00 4 1 ASN A 48 ? ? -121.36 -114.49 5 1 SER A 60 ? ? -78.60 -72.14 6 1 LEU B 7 ? ? -138.02 -31.56 7 1 ASP B 40 ? ? -133.73 -153.09 8 1 ASN B 48 ? ? -135.11 -103.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ARG 66 ? CG ? B ARG 66 CG 2 1 Y 1 B ARG 66 ? CD ? B ARG 66 CD 3 1 Y 1 B ARG 66 ? NE ? B ARG 66 NE 4 1 Y 1 B ARG 66 ? CZ ? B ARG 66 CZ 5 1 Y 1 B ARG 66 ? NH1 ? B ARG 66 NH1 6 1 Y 1 B ARG 66 ? NH2 ? B ARG 66 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A SER 69 ? A SER 69 6 1 Y 1 A HIS 70 ? A HIS 70 7 1 Y 1 A HIS 71 ? A HIS 71 8 1 Y 1 A SER 72 ? A SER 72 9 1 Y 1 A ASN 73 ? A ASN 73 10 1 Y 1 A ASN 74 ? A ASN 74 11 1 Y 1 A ALA 75 ? A ALA 75 12 1 Y 1 A GLY 76 ? A GLY 76 13 1 Y 1 A GLY 77 ? A GLY 77 14 1 Y 1 A GLY 78 ? A GLY 78 15 1 Y 1 A THR 79 ? A THR 79 16 1 Y 1 A SER 80 ? A SER 80 17 1 Y 1 A SER 81 ? A SER 81 18 1 Y 1 A ASN 82 ? A ASN 82 19 1 Y 1 A TYR 83 ? A TYR 83 20 1 Y 1 A HIS 84 ? A HIS 84 21 1 Y 1 A HIS 85 ? A HIS 85 22 1 Y 1 A GLY 86 ? A GLY 86 23 1 Y 1 A SER 87 ? A SER 87 24 1 Y 1 A SER 88 ? A SER 88 25 1 Y 1 A ALA 89 ? A ALA 89 26 1 Y 1 A GLN 90 ? A GLN 90 27 1 Y 1 A ASN 91 ? A ASN 91 28 1 Y 1 A THR 92 ? A THR 92 29 1 Y 1 A SER 93 ? A SER 93 30 1 Y 1 A ALA 94 ? A ALA 94 31 1 Y 1 A GLN 95 ? A GLN 95 32 1 Y 1 A GLN 96 ? A GLN 96 33 1 Y 1 A ASP 97 ? A ASP 97 34 1 Y 1 A SER 98 ? A SER 98 35 1 Y 1 A GLU 99 ? A GLU 99 36 1 Y 1 A GLU 100 ? A GLU 100 37 1 Y 1 A THR 101 ? A THR 101 38 1 Y 1 A GLU 102 ? A GLU 102 39 1 Y 1 B MET 1 ? B MET 1 40 1 Y 1 B ALA 2 ? B ALA 2 41 1 Y 1 B LYS 3 ? B LYS 3 42 1 Y 1 B GLY 4 ? B GLY 4 43 1 Y 1 B SER 69 ? B SER 69 44 1 Y 1 B HIS 70 ? B HIS 70 45 1 Y 1 B HIS 71 ? B HIS 71 46 1 Y 1 B SER 72 ? B SER 72 47 1 Y 1 B ASN 73 ? B ASN 73 48 1 Y 1 B ASN 74 ? B ASN 74 49 1 Y 1 B ALA 75 ? B ALA 75 50 1 Y 1 B GLY 76 ? B GLY 76 51 1 Y 1 B GLY 77 ? B GLY 77 52 1 Y 1 B GLY 78 ? B GLY 78 53 1 Y 1 B THR 79 ? B THR 79 54 1 Y 1 B SER 80 ? B SER 80 55 1 Y 1 B SER 81 ? B SER 81 56 1 Y 1 B ASN 82 ? B ASN 82 57 1 Y 1 B TYR 83 ? B TYR 83 58 1 Y 1 B HIS 84 ? B HIS 84 59 1 Y 1 B HIS 85 ? B HIS 85 60 1 Y 1 B GLY 86 ? B GLY 86 61 1 Y 1 B SER 87 ? B SER 87 62 1 Y 1 B SER 88 ? B SER 88 63 1 Y 1 B ALA 89 ? B ALA 89 64 1 Y 1 B GLN 90 ? B GLN 90 65 1 Y 1 B ASN 91 ? B ASN 91 66 1 Y 1 B THR 92 ? B THR 92 67 1 Y 1 B SER 93 ? B SER 93 68 1 Y 1 B ALA 94 ? B ALA 94 69 1 Y 1 B GLN 95 ? B GLN 95 70 1 Y 1 B GLN 96 ? B GLN 96 71 1 Y 1 B ASP 97 ? B ASP 97 72 1 Y 1 B SER 98 ? B SER 98 73 1 Y 1 B GLU 99 ? B GLU 99 74 1 Y 1 B GLU 100 ? B GLU 100 75 1 Y 1 B THR 101 ? B THR 101 76 1 Y 1 B GLU 102 ? B GLU 102 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? #