HEADER RNA 13-MAR-17 5NEX TITLE THE STRUCTURE OF THE G. VIOLACEUS GUANIDINE II RIBOSWITCH P1 STEM-LOOP TITLE 2 WITH AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 4 ORGANISM_TAXID: 33072 KEYWDS GUANIDINE II RIBOSWITCH, STEM-LOOP, TETRA LOOP, DIMER, RNA, AGMATINE EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,J.WANG,D.M.J.LILLEY REVDAT 4 20-MAR-19 5NEX 1 KEYWDS REMARK REVDAT 3 30-AUG-17 5NEX 1 REMARK REVDAT 2 05-JUL-17 5NEX 1 JRNL REVDAT 1 31-MAY-17 5NEX 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL THE STRUCTURE OF THE GUANIDINE-II RIBOSWITCH. JRNL REF CELL CHEM BIOL V. 24 695 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28529131 JRNL DOI 10.1016/J.CHEMBIOL.2017.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.590 REMARK 3 FREE R VALUE TEST SET COUNT : 930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4314 - 3.2885 0.99 2278 98 0.1605 0.1735 REMARK 3 2 3.2885 - 2.6103 0.99 2202 169 0.2150 0.2417 REMARK 3 3 2.6103 - 2.2803 1.00 2248 151 0.2186 0.2657 REMARK 3 4 2.2803 - 2.0718 1.00 2209 133 0.2148 0.2800 REMARK 3 5 2.0718 - 1.9233 1.00 2272 115 0.2532 0.2795 REMARK 3 6 1.9233 - 1.8099 1.00 2267 129 0.2953 0.2988 REMARK 3 7 1.8099 - 1.7193 0.99 2237 135 0.3159 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 447 REMARK 3 ANGLE : 1.383 689 REMARK 3 CHIRALITY : 0.044 88 REMARK 3 PLANARITY : 0.009 20 REMARK 3 DIHEDRAL : 11.776 212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2507 21.0114 15.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.3064 REMARK 3 T33: 0.2670 T12: -0.0240 REMARK 3 T13: 0.0130 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.1994 L22: 4.0630 REMARK 3 L33: 5.2628 L12: -0.1740 REMARK 3 L13: 0.8109 L23: -3.9228 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: -0.0330 S13: 0.0351 REMARK 3 S21: 0.3086 S22: 0.0747 S23: 0.0064 REMARK 3 S31: -0.3426 S32: 0.2446 S33: -0.0692 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1787 18.3016 9.1254 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2951 REMARK 3 T33: 0.2368 T12: -0.0197 REMARK 3 T13: 0.0117 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 6.9485 L22: 4.4847 REMARK 3 L33: 6.8891 L12: -2.6352 REMARK 3 L13: 2.9695 L23: -4.3141 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.1949 S13: 0.1844 REMARK 3 S21: 0.1366 S22: -0.1150 S23: -0.2827 REMARK 3 S31: -0.4373 S32: 0.6972 S33: 0.1979 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.719 REMARK 200 RESOLUTION RANGE LOW (A) : 45.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM ACETATE, 0.05 M MES REMARK 280 PH 5.6, 2.5 M AMMONIUM SULFATE SOAKING WITH 500MM AGMATINE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 27.81950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 16.06160 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.30900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 27.81950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 16.06160 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.30900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 27.81950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 16.06160 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.30900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 27.81950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 16.06160 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.30900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 27.81950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 16.06160 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.30900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 27.81950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 16.06160 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.30900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 32.12319 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.61800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 32.12319 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.61800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 32.12319 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.61800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 32.12319 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.61800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 32.12319 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.61800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 32.12319 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.61800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -27.81950 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 16.06160 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.30900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 102 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 103 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 105 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 106 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' A A 16 O3P CBV A 17 0.41 REMARK 500 HO3' CBV A 17 P C A 18 0.79 REMARK 500 OP2 G A 10 O HOH A 201 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 5 O2' REMARK 620 2 G A 5 O2' 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 5 O2' REMARK 620 2 HOH A 214 O 144.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 6 OP1 REMARK 620 2 G A 6 OP1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 6 O2' REMARK 620 2 G A 6 OP2 52.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 16 O2' REMARK 620 2 A A 16 O2' 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBV A 17 O2P REMARK 620 2 CBV A 17 O2P 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBV A 17 O2' REMARK 620 2 CBV A 17 O1P 51.6 REMARK 620 3 HOH A 215 O 98.9 140.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 A 109 DBREF 5NEX A 1 18 PDB 5NEX 5NEX 1 18 SEQRES 1 A 18 G G U G G G G A C G A C C SEQRES 2 A 18 C C A CBV C HET CBV A 17 33 HET NA A 101 1 HET NA A 102 1 HET NA A 103 1 HET NA A 104 1 HET NA A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET AG2 A 109 46 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM NA SODIUM ION HETNAM AG2 AGMATINE HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 1 CBV C9 H13 BR N3 O8 P FORMUL 2 NA 8(NA 1+) FORMUL 10 AG2 C5 H14 N4 FORMUL 11 HOH *15(H2 O) LINK O2' G A 5 NA NA A 105 1555 1555 2.84 LINK O2' G A 5 NA NA A 108 1555 1555 3.10 LINK OP1 G A 6 NA NA A 102 1555 1555 2.81 LINK O2' G A 6 NA NA A 107 1555 1555 2.86 LINK O3' A A 16 P CBV A 17 1555 1555 1.63 LINK O2' A A 16 NA NA A 106 1555 1555 2.93 LINK O2' A A 16 NA NA A 101 1555 1555 2.89 LINK O2P CBV A 17 NA NA A 103 1555 1555 2.85 LINK O3' CBV A 17 P C A 18 1555 1555 1.61 LINK O2' CBV A 17 NA NA A 104 1555 1555 2.78 LINK O2' G A 5 NA NA A 105 1555 2565 2.84 LINK OP1 G A 6 NA NA A 102 1555 2565 2.81 LINK OP2 G A 6 NA NA A 107 1555 2565 2.91 LINK O2' A A 16 NA NA A 106 1555 2565 2.94 LINK O1P CBV A 17 NA NA A 104 1555 3455 2.94 LINK O2P CBV A 17 NA NA A 103 1555 2565 2.85 LINK NA NA A 104 O HOH A 215 1555 2565 3.03 LINK NA NA A 108 O HOH A 214 1555 3455 2.84 SITE 1 AC1 2 A A 16 CBV A 17 SITE 1 AC2 2 G A 6 NA A 105 SITE 1 AC3 1 CBV A 17 SITE 1 AC4 2 CBV A 17 HOH A 215 SITE 1 AC5 3 G A 5 G A 6 NA A 102 SITE 1 AC6 2 A A 16 CBV A 17 SITE 1 AC7 1 G A 6 SITE 1 AC8 3 G A 4 G A 5 HOH A 214 SITE 1 AC9 6 G A 7 A A 8 C A 9 G A 10 SITE 2 AC9 6 HOH A 201 HOH A 211 CRYST1 55.639 55.639 135.927 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017973 0.010377 0.000000 0.00000 SCALE2 0.000000 0.020753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007357 0.00000