HEADER CELL ADHESION 13-MAR-17 5NF2 TITLE THE FIMBRIAL SHAFT PROTEIN MFA1 FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR FIMBRIUM SUBUNIT MFA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PG-II FIM A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS (STRAIN ATCC 33277 / SOURCE 3 DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561); SOURCE 4 ORGANISM_TAXID: 431947; SOURCE 5 STRAIN: ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 SOURCE 6 / 2561; SOURCE 7 GENE: MFA1, PGN_0287; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS FIMBRIA, ADHESIN, PERIODONTITIS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.HALL,Y.HASEGAWA,K.PERSSON REVDAT 1 07-FEB-18 5NF2 0 JRNL AUTH M.HALL,Y.HASEGAWA,F.YOSHIMURA,K.PERSSON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SHAFT, ANCHOR, JRNL TITL 2 AND TIP PROTEINS OF THE MFA1 FIMBRIA FROM THE PERIODONTAL JRNL TITL 3 PATHOGEN PORPHYROMONAS GINGIVALIS. JRNL REF SCI REP V. 8 1793 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29379120 JRNL DOI 10.1038/S41598-018-20067-Z REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 66571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3158 - 4.9884 1.00 2943 156 0.1589 0.1770 REMARK 3 2 4.9884 - 3.9600 1.00 2739 157 0.1249 0.1319 REMARK 3 3 3.9600 - 3.4596 1.00 2682 160 0.1366 0.1672 REMARK 3 4 3.4596 - 3.1434 1.00 2694 126 0.1493 0.1708 REMARK 3 5 3.1434 - 2.9181 1.00 2665 150 0.1520 0.1686 REMARK 3 6 2.9181 - 2.7461 1.00 2619 140 0.1508 0.1788 REMARK 3 7 2.7461 - 2.6086 1.00 2669 143 0.1542 0.1887 REMARK 3 8 2.6086 - 2.4950 1.00 2646 140 0.1435 0.1799 REMARK 3 9 2.4950 - 2.3990 1.00 2618 145 0.1434 0.1604 REMARK 3 10 2.3990 - 2.3162 1.00 2624 138 0.1376 0.1670 REMARK 3 11 2.3162 - 2.2438 1.00 2625 135 0.1413 0.2077 REMARK 3 12 2.2438 - 2.1796 1.00 2623 130 0.1414 0.1840 REMARK 3 13 2.1796 - 2.1222 1.00 2561 139 0.1517 0.1824 REMARK 3 14 2.1222 - 2.0705 1.00 2654 124 0.1479 0.1897 REMARK 3 15 2.0705 - 2.0234 1.00 2610 125 0.1531 0.1880 REMARK 3 16 2.0234 - 1.9803 1.00 2610 137 0.1639 0.2160 REMARK 3 17 1.9803 - 1.9407 1.00 2541 147 0.1679 0.2042 REMARK 3 18 1.9407 - 1.9041 1.00 2634 147 0.1763 0.2224 REMARK 3 19 1.9041 - 1.8701 1.00 2560 142 0.1924 0.2212 REMARK 3 20 1.8701 - 1.8384 1.00 2573 153 0.1940 0.1996 REMARK 3 21 1.8384 - 1.8087 1.00 2604 137 0.2196 0.2492 REMARK 3 22 1.8087 - 1.7809 1.00 2535 133 0.2310 0.2700 REMARK 3 23 1.7809 - 1.7547 1.00 2603 144 0.2616 0.2772 REMARK 3 24 1.7547 - 1.7300 1.00 2567 124 0.2719 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3815 REMARK 3 ANGLE : 1.127 5208 REMARK 3 CHIRALITY : 0.047 584 REMARK 3 PLANARITY : 0.006 679 REMARK 3 DIHEDRAL : 12.188 1386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 64:211) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0059 4.3076 97.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.2124 REMARK 3 T33: 0.2143 T12: 0.0334 REMARK 3 T13: 0.0207 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6651 L22: 0.6170 REMARK 3 L33: 1.5824 L12: -0.0519 REMARK 3 L13: 0.3682 L23: -0.6086 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: -0.1470 S13: 0.1267 REMARK 3 S21: 0.1792 S22: 0.0404 S23: -0.0076 REMARK 3 S31: -0.3606 S32: -0.1514 S33: -0.0031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 212:461) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8786 11.5186 64.6362 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1546 REMARK 3 T33: 0.2197 T12: 0.0066 REMARK 3 T13: 0.0352 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.3545 L22: 0.4462 REMARK 3 L33: 1.7738 L12: -0.1765 REMARK 3 L13: 0.3479 L23: -0.5388 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.0221 S13: 0.0425 REMARK 3 S21: 0.0355 S22: -0.0055 S23: -0.0281 REMARK 3 S31: -0.1403 S32: 0.0212 S33: 0.0254 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 462:563) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5167 9.6579 68.4422 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.2034 REMARK 3 T33: 0.2365 T12: 0.0082 REMARK 3 T13: 0.0374 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.4139 L22: 0.9189 REMARK 3 L33: 1.7789 L12: -0.0563 REMARK 3 L13: 0.5131 L23: -0.1854 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0599 S13: 0.0481 REMARK 3 S21: -0.0100 S22: -0.0374 S23: -0.1165 REMARK 3 S31: -0.1016 S32: 0.2141 S33: 0.0673 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.19100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 75 MM CALCIUM ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE PH 6.5., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.11100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.92300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.92300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.05550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.92300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.92300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 213.16650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.92300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.92300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.05550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.92300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.92300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 213.16650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 142.11100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 214A REMARK 465 ALA A 214B REMARK 465 ALA A 214C REMARK 465 VAL A 214D REMARK 465 SER A 214E REMARK 465 GLU A 214F REMARK 465 ALA A 214G REMARK 465 ASN A 214H REMARK 465 ALA A 214I REMARK 465 ILE A 214J REMARK 465 ALA A 214K REMARK 465 GLY A 214L REMARK 465 ILE A 214M REMARK 465 LYS A 214N REMARK 465 ASN A 214O REMARK 465 GLN A 214P REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 830 O HOH A 1106 2.14 REMARK 500 O HOH A 1064 O HOH A 1230 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 -123.67 51.10 REMARK 500 ASP A 351 106.89 58.15 REMARK 500 ASN A 385 12.34 -143.05 REMARK 500 SER A 472 -34.40 -135.50 REMARK 500 PRO A 473 -80.94 -110.06 REMARK 500 ASP A 474 42.43 -98.91 REMARK 500 SER A 475 -14.19 -142.70 REMARK 500 SER A 479 67.63 -152.09 REMARK 500 LEU A 504 49.73 -91.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1278 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 507 OD1 REMARK 620 2 ASP A 507 OD2 53.1 REMARK 620 3 ASP A 509 O 85.1 91.8 REMARK 620 4 ASP A 509 OD1 76.8 129.6 77.0 REMARK 620 5 ASN A 512 O 129.5 78.0 84.6 146.6 REMARK 620 6 ASN A 512 OD1 155.8 150.2 87.1 79.1 72.3 REMARK 620 7 GLU A 514 O 94.5 92.6 174.2 97.2 100.0 91.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 602 DBREF 5NF2 A 65 563 UNP B2RHG1 MFA1_PORG3 65 563 SEQADV 5NF2 PRO A 64 UNP B2RHG1 EXPRESSION TAG SEQADV 5NF2 GLU A 214 UNP B2RHG1 INSERTION SEQRES 1 A 501 PRO GLY GLU TRP ALA GLY LYS ASP LYS ILE GLU LYS VAL SEQRES 2 A 501 SER ILE TYR MET VAL PRO GLN GLY GLY PRO GLY LEU VAL SEQRES 3 A 501 GLU SER ALA GLU ASP LEU ASP PHE GLY THR TYR TYR GLU SEQRES 4 A 501 ASN PRO THR ILE ASP PRO ALA THR HIS ASN ALA ILE LEU SEQRES 5 A 501 LYS PRO LYS LYS GLY ILE LYS VAL ASN SER ALA VAL GLY SEQRES 6 A 501 LYS THR VAL LYS VAL TYR VAL VAL LEU ASN ASP ILE ALA SEQRES 7 A 501 GLY LYS ALA LYS ALA LEU LEU ALA ASN VAL ASN ALA ALA SEQRES 8 A 501 ASP PHE ASP ALA LYS PHE LYS GLU ILE ILE GLU LEU SER SEQRES 9 A 501 THR GLN ALA GLN ALA LEU GLY THR VAL ALA ASP GLY PRO SEQRES 10 A 501 ASN PRO ALA THR ALA ALA GLY LYS ILE ALA LYS LYS ASN SEQRES 11 A 501 GLY THR THR ASP GLU THR ILE MET MET THR CYS LEU GLN SEQRES 12 A 501 PRO SER ASP ALA LEU THR ILE GLU GLU ALA ALA VAL SER SEQRES 13 A 501 GLU ALA ASN ALA ILE ALA GLY ILE LYS ASN GLN ALA LYS SEQRES 14 A 501 VAL THR VAL GLU ARG SER VAL ALA ARG ALA MET VAL SER SEQRES 15 A 501 THR LYS ALA GLN SER TYR GLU ILE LYS ALA THR THR GLN SEQRES 16 A 501 ILE GLY GLU ILE ALA ALA GLY SER VAL LEU ALA THR ILE SEQRES 17 A 501 THR ASP ILE ARG TRP VAL VAL ALA GLN GLY GLU ARG ARG SEQRES 18 A 501 GLN TYR LEU SER LYS LYS ARG GLY THR VAL PRO GLU ASN SEQRES 19 A 501 THR TRP VAL THR PRO GLY SER GLY PHE VAL PRO THR SER SEQRES 20 A 501 SER THR PHE HIS THR ASN ALA THR GLU TYR TYR ASP TYR SEQRES 21 A 501 ALA GLY LEU TRP GLU ASP HIS ASN THR ASN GLU ALA VAL SEQRES 22 A 501 ILE SER GLY THR GLN VAL PRO THR LEU ALA ASP TYR GLN SEQRES 23 A 501 LEU GLN ASP VAL THR GLY GLU LEU ALA ASN ALA LEU SER SEQRES 24 A 501 GLY LYS PHE LEU LEU PRO ASN THR HIS LYS SER GLY ALA SEQRES 25 A 501 ASN ALA ALA SER SER ASP TYR LYS ARG GLY ASN THR ALA SEQRES 26 A 501 TYR VAL LEU VAL ARG ALA LYS PHE THR PRO LYS LYS GLU SEQRES 27 A 501 ALA PHE ILE ASP ARG GLY LYS THR TYR SER ASP ASN THR SEQRES 28 A 501 ALA VAL PRO GLU TYR VAL ALA GLY GLU ASP PHE PHE VAL SEQRES 29 A 501 GLY GLU ASN GLY GLN PHE TYR VAL SER MET LYS SER VAL SEQRES 30 A 501 THR ASP PRO LYS VAL GLY GLY VAL ALA GLY MET LYS ALA SEQRES 31 A 501 HIS LYS TYR VAL LYS GLY LYS VAL LEU TYR TYR ALA TRP SEQRES 32 A 501 LEU ASN PRO SER THR THR SER PRO ASP SER TRP TRP ASN SEQRES 33 A 501 SER PRO VAL VAL ARG ASN ASN ILE TYR HIS ILE HIS ILE SEQRES 34 A 501 LYS SER ILE LYS LYS LEU GLY PHE ASN TRP ASN PRO LEU SEQRES 35 A 501 VAL PRO ASP PRO ASP PRO SER ASN PRO GLU ASN PRO ASN SEQRES 36 A 501 ASN PRO ASP PRO ASN PRO ASP GLU PRO GLY THR PRO VAL SEQRES 37 A 501 PRO THR ASP PRO GLU ASN PRO LEU PRO ASP GLN ASP THR SEQRES 38 A 501 PHE MET SER VAL GLU VAL THR VAL LEU PRO TRP LYS VAL SEQRES 39 A 501 HIS SER TYR GLU VAL ASP LEU HET CA A 601 1 HET ACT A 602 7 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 2 CA CA 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *578(H2 O) HELIX 1 AA1 GLY A 65 GLY A 69 5 5 HELIX 2 AA2 PHE A 97 TYR A 101 1 5 HELIX 3 AA3 VAL A 123 VAL A 127 5 5 HELIX 4 AA4 GLY A 142 ALA A 149 1 8 HELIX 5 AA5 ASN A 152 PHE A 160 1 9 HELIX 6 AA6 THR A 175 GLY A 179 5 5 HELIX 7 AA7 ALA A 185 LYS A 188 5 4 HELIX 8 AA8 SER A 310 ALA A 316 1 7 HELIX 9 AA9 TYR A 322 GLU A 327 5 6 HELIX 10 AB1 LEU A 344 LEU A 349 5 6 HELIX 11 AB2 THR A 353 SER A 361 1 9 HELIX 12 AB3 LYS A 399 PHE A 402 5 4 HELIX 13 AB4 SER A 435 THR A 440 1 6 HELIX 14 AB5 ASP A 441 GLY A 445 5 5 SHEET 1 AA1 3 ASP A 71 LYS A 72 0 SHEET 2 AA1 3 ASP A 197 ILE A 200 1 O GLU A 198 N LYS A 72 SHEET 3 AA1 3 ALA A 190 ASN A 193 -1 N LYS A 191 O THR A 199 SHEET 1 AA2 8 GLU A 90 ASP A 96 0 SHEET 2 AA2 8 LYS A 75 PRO A 82 -1 N MET A 80 O GLU A 90 SHEET 3 AA2 8 THR A 130 LEU A 137 -1 O TYR A 134 N TYR A 79 SHEET 4 AA2 8 MET A 202 THR A 203 -1 O MET A 202 N LEU A 137 SHEET 5 AA2 8 LYS A 231 ARG A 236 -1 O GLU A 235 N THR A 203 SHEET 6 AA2 8 TYR A 559 ASP A 562 -1 O VAL A 561 N VAL A 232 SHEET 7 AA2 8 ASN A 112 LEU A 115 1 N ALA A 113 O GLU A 560 SHEET 8 AA2 8 THR A 105 ASP A 107 -1 N THR A 105 O ILE A 114 SHEET 1 AA3 4 GLU A 90 ASP A 96 0 SHEET 2 AA3 4 LYS A 75 PRO A 82 -1 N MET A 80 O GLU A 90 SHEET 3 AA3 4 THR A 130 LEU A 137 -1 O TYR A 134 N TYR A 79 SHEET 4 AA3 4 LEU A 211 THR A 212 -1 O LEU A 211 N VAL A 131 SHEET 1 AA4 2 ILE A 163 GLU A 165 0 SHEET 2 AA4 2 ARG A 283 TYR A 285 -1 O GLN A 284 N ILE A 164 SHEET 1 AA5 4 LYS A 363 LEU A 365 0 SHEET 2 AA5 4 ALA A 239 THR A 245 -1 N ALA A 241 O LYS A 363 SHEET 3 AA5 4 ILE A 486 ILE A 494 1 O TYR A 487 N ARG A 240 SHEET 4 AA5 4 MET A 545 LEU A 552 -1 O LEU A 552 N ILE A 486 SHEET 1 AA6 3 TYR A 250 LYS A 253 0 SHEET 2 AA6 3 VAL A 266 ALA A 278 -1 O LEU A 267 N ILE A 252 SHEET 3 AA6 3 THR A 339 GLN A 340 -1 O THR A 339 N TRP A 275 SHEET 1 AA7 4 TYR A 250 LYS A 253 0 SHEET 2 AA7 4 VAL A 266 ALA A 278 -1 O LEU A 267 N ILE A 252 SHEET 3 AA7 4 TYR A 388 PRO A 397 -1 O ARG A 392 N ARG A 274 SHEET 4 AA7 4 LYS A 459 TRP A 465 -1 O TYR A 462 N VAL A 391 SHEET 1 AA8 2 GLY A 280 GLU A 281 0 SHEET 2 AA8 2 TYR A 320 ASP A 321 -1 O ASP A 321 N GLY A 280 SHEET 1 AA9 2 LYS A 289 ARG A 290 0 SHEET 2 AA9 2 TRP A 298 VAL A 299 -1 O VAL A 299 N LYS A 289 SHEET 1 AB1 3 PHE A 432 TYR A 433 0 SHEET 2 AB1 3 PHE A 424 GLY A 427 -1 N PHE A 425 O TYR A 433 SHEET 3 AB1 3 ALA A 452 TYR A 455 -1 O TYR A 455 N PHE A 424 LINK OD1 ASP A 507 CA CA A 601 1555 1555 2.46 LINK OD2 ASP A 507 CA CA A 601 1555 1555 2.47 LINK O ASP A 509 CA CA A 601 1555 1555 2.32 LINK OD1 ASP A 509 CA CA A 601 1555 1555 2.42 LINK O ASN A 512 CA CA A 601 1555 1555 2.35 LINK OD1 ASN A 512 CA CA A 601 1555 1555 2.40 LINK O GLU A 514 CA CA A 601 1555 1555 2.28 CISPEP 1 GLY A 179 PRO A 180 0 2.56 CISPEP 2 SER A 469 THR A 470 0 -8.24 CISPEP 3 THR A 471 SER A 472 0 2.43 SITE 1 AC1 4 ASP A 507 ASP A 509 ASN A 512 GLU A 514 SITE 1 AC2 7 LYS A 288 TRP A 298 THR A 300 PRO A 367 SITE 2 AC2 7 ARG A 483 HOH A 741 HOH A1057 CRYST1 65.846 65.846 284.222 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015187 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003518 0.00000