HEADER SUGAR BINDING PROTEIN 13-MAR-17 5NFB TITLE STRUCTURE OF GALECTIN-3 CRD IN COMPLEX WITH COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 5 GALACTOSE-SPECIFIC LECTIN 3,GALACTOSIDE-BINDING PROTEIN,GALBP,IGE- COMPND 6 BINDING PROTEIN,L-31,LAMININ-BINDING PROTEIN,LECTIN L-29,MAC-2 COMPND 7 ANTIGEN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS3, MAC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN-3 CRD, CATION-PI INTERACTIONS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.RONIN,C.ATMANENE,F.M.GAUTIER,F.DJEDAINI PILARD,S.TELETCHEA, AUTHOR 2 F.CIESIELSKI,V.VIVAT HANNAH,C.GRANDJEAN REVDAT 2 17-JAN-24 5NFB 1 REMARK REVDAT 1 21-JUN-17 5NFB 0 JRNL AUTH C.ATMANENE,C.RONIN,S.TELETCHEA,F.M.GAUTIER, JRNL AUTH 2 F.DJEDAINI-PILARD,F.CIESIELSKI,V.VIVAT,C.GRANDJEAN JRNL TITL BIOPHYSICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 MONO/DI-ARYLATED LACTOSAMINE DERIVATIVES INTERACTION WITH JRNL TITL 3 HUMAN GALECTIN-3. JRNL REF BIOCHEM. BIOPHYS. RES. V. 489 281 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28554839 JRNL DOI 10.1016/J.BBRC.2017.05.150 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.1590 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1223 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1671 ; 2.297 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2728 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 7.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;33.377 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 205 ;13.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 9.501 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1382 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 295 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 565 ; 1.631 ; 1.382 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 564 ; 1.622 ; 1.378 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 2.269 ; 2.071 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 709 ; 2.272 ; 2.074 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 658 ; 2.717 ; 1.740 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 659 ; 2.715 ; 1.742 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 957 ; 4.039 ; 2.511 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1315 ; 5.473 ;12.550 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1283 ; 5.429 ;12.283 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18338 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 26.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH7.5; 30-34% PEG4000; REMARK 280 100MM MGCL2; 400MM NASCN; 8MM BETA-MERCAPTOETHANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 SER A 78 REMARK 465 HIS A 79 REMARK 465 ASN A 80 REMARK 465 HIS A 81 REMARK 465 ASN A 82 REMARK 465 HIS A 83 REMARK 465 ASN A 84 REMARK 465 HIS A 85 REMARK 465 ASN A 86 REMARK 465 HIS A 87 REMARK 465 ASN A 88 REMARK 465 HIS A 89 REMARK 465 ASN A 90 REMARK 465 ASP A 91 REMARK 465 TYR A 92 REMARK 465 ASP A 93 REMARK 465 ILE A 94 REMARK 465 PRO A 95 REMARK 465 THR A 96 REMARK 465 THR A 97 REMARK 465 GLU A 98 REMARK 465 ASN A 99 REMARK 465 LEU A 100 REMARK 465 TYR A 101 REMARK 465 PHE A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 SER A 105 REMARK 465 PRO A 106 REMARK 465 TYR A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 PRO A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 210 O HOH A 418 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 207 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 0.78 88.07 REMARK 500 ASN A 164 75.29 -150.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8VT A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NF7 RELATED DB: PDB REMARK 900 SAME PROJECTE : SAME PROTEIN WITH DIFFERENT COMPOUNDS OF THE SAME REMARK 900 SERIES REMARK 900 RELATED ID: 5NF9 RELATED DB: PDB REMARK 900 RELATED ID: 5NFA RELATED DB: PDB DBREF 5NFB A 106 250 UNP P17931 LEG3_HUMAN 106 250 SEQADV 5NFB MET A 75 UNP P17931 INITIATING METHIONINE SEQADV 5NFB GLY A 76 UNP P17931 EXPRESSION TAG SEQADV 5NFB SER A 77 UNP P17931 EXPRESSION TAG SEQADV 5NFB SER A 78 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 79 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 80 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 81 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 82 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 83 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 84 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 85 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 86 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 87 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 88 UNP P17931 EXPRESSION TAG SEQADV 5NFB HIS A 89 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 90 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASP A 91 UNP P17931 EXPRESSION TAG SEQADV 5NFB TYR A 92 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASP A 93 UNP P17931 EXPRESSION TAG SEQADV 5NFB ILE A 94 UNP P17931 EXPRESSION TAG SEQADV 5NFB PRO A 95 UNP P17931 EXPRESSION TAG SEQADV 5NFB THR A 96 UNP P17931 EXPRESSION TAG SEQADV 5NFB THR A 97 UNP P17931 EXPRESSION TAG SEQADV 5NFB GLU A 98 UNP P17931 EXPRESSION TAG SEQADV 5NFB ASN A 99 UNP P17931 EXPRESSION TAG SEQADV 5NFB LEU A 100 UNP P17931 EXPRESSION TAG SEQADV 5NFB TYR A 101 UNP P17931 EXPRESSION TAG SEQADV 5NFB PHE A 102 UNP P17931 EXPRESSION TAG SEQADV 5NFB GLN A 103 UNP P17931 EXPRESSION TAG SEQADV 5NFB GLY A 104 UNP P17931 EXPRESSION TAG SEQADV 5NFB SER A 105 UNP P17931 EXPRESSION TAG SEQRES 1 A 176 MET GLY SER SER HIS ASN HIS ASN HIS ASN HIS ASN HIS SEQRES 2 A 176 ASN HIS ASN ASP TYR ASP ILE PRO THR THR GLU ASN LEU SEQRES 3 A 176 TYR PHE GLN GLY SER PRO TYR GLY ALA PRO ALA GLY PRO SEQRES 4 A 176 LEU ILE VAL PRO TYR ASN LEU PRO LEU PRO GLY GLY VAL SEQRES 5 A 176 VAL PRO ARG MET LEU ILE THR ILE LEU GLY THR VAL LYS SEQRES 6 A 176 PRO ASN ALA ASN ARG ILE ALA LEU ASP PHE GLN ARG GLY SEQRES 7 A 176 ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE ASN GLU SEQRES 8 A 176 ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS LEU ASP SEQRES 9 A 176 ASN ASN TRP GLY ARG GLU GLU ARG GLN SER VAL PHE PRO SEQRES 10 A 176 PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL LEU VAL SEQRES 11 A 176 GLU PRO ASP HIS PHE LYS VAL ALA VAL ASN ASP ALA HIS SEQRES 12 A 176 LEU LEU GLN TYR ASN HIS ARG VAL LYS LYS LEU ASN GLU SEQRES 13 A 176 ILE SER LYS LEU GLY ILE SER GLY ASP ILE ASP LEU THR SEQRES 14 A 176 SER ALA SER TYR THR MET ILE HET 8VT A 301 45 HETNAM 8VT ~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-ACETAMIDO-6- HETNAM 2 8VT (HYDROXYMETHYL)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6- HETNAM 3 8VT (HYDROXYMETHYL)-4-[(3-METHOXYPHENYL)METHOXY]-3,5- HETNAM 4 8VT BIS(OXIDANYL)OXAN-2-YL]OXY-4-OXIDANYL-OXAN-3-YL]-3- HETNAM 5 8VT METHOXY-BENZAMIDE FORMUL 2 8VT C30 H40 N2 O13 FORMUL 3 HOH *118(H2 O) HELIX 1 AA1 LYS A 227 ILE A 231 5 5 SHEET 1 AA1 6 TYR A 118 PRO A 121 0 SHEET 2 AA1 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA1 6 ILE A 145 ARG A 151 -1 N ALA A 146 O SER A 237 SHEET 4 AA1 6 ASP A 154 GLU A 165 -1 O PHE A 157 N PHE A 149 SHEET 5 AA1 6 ARG A 168 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA1 6 ASN A 180 TRP A 181 -1 O ASN A 180 N LEU A 177 SHEET 1 AA2 6 TYR A 118 PRO A 121 0 SHEET 2 AA2 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA2 6 ILE A 145 ARG A 151 -1 N ALA A 146 O SER A 237 SHEET 4 AA2 6 ASP A 154 GLU A 165 -1 O PHE A 157 N PHE A 149 SHEET 5 AA2 6 ARG A 168 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA2 6 GLU A 185 GLN A 187 -1 O GLU A 185 N CYS A 173 SHEET 1 AA3 5 ALA A 216 ASN A 222 0 SHEET 2 AA3 5 HIS A 208 VAL A 213 -1 N VAL A 211 O LEU A 219 SHEET 3 AA3 5 PRO A 197 VAL A 204 -1 N LEU A 203 O LYS A 210 SHEET 4 AA3 5 MET A 130 VAL A 138 -1 N GLY A 136 O PHE A 198 SHEET 5 AA3 5 ILE A 240 MET A 249 -1 O ASP A 241 N THR A 137 CISPEP 1 VAL A 116 PRO A 117 0 4.46 SITE 1 AC1 12 ARG A 144 HIS A 158 ASN A 160 ARG A 162 SITE 2 AC1 12 GLU A 165 ASN A 174 GLU A 184 ARG A 186 SITE 3 AC1 12 HOH A 404 HOH A 440 HOH A 456 HOH A 486 CRYST1 36.240 57.950 62.580 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015980 0.00000