HEADER TRANSPORT PROTEIN 14-MAR-17 5NFE TITLE NEUTRON STRUCTURE OF HUMAN TRANSTHYRETIN (TTR) T119M MUTANT AT ROOM TITLE 2 TEMPERATURE TO 1.85A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-M11 KEYWDS TRANSTHYRETIN, PREALBUMIN, HOMOTETRAMER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR A.W.YEE,M.MOULIN,M.P.BLAKELEY,A.OSTERMANN,J.B.COOPER,M.HAERTLEIN, AUTHOR 2 E.P.MITCHELL,V.T.FORSYTH REVDAT 3 01-MAY-24 5NFE 1 REMARK REVDAT 2 20-MAR-19 5NFE 1 JRNL REVDAT 1 02-JAN-19 5NFE 0 JRNL AUTH A.W.YEE,M.ALDEGHI,M.P.BLAKELEY,A.OSTERMANN,P.J.MAS,M.MOULIN, JRNL AUTH 2 D.DE SANCTIS,M.W.BOWLER,C.MUELLER-DIECKMANN,E.P.MITCHELL, JRNL AUTH 3 M.HAERTLEIN,B.L.DE GROOT,E.BOERI ERBA,V.T.FORSYTH JRNL TITL A MOLECULAR MECHANISM FOR TRANSTHYRETIN AMYLOIDOGENESIS. JRNL REF NAT COMMUN V. 10 925 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30804345 JRNL DOI 10.1038/S41467-019-08609-Z REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 20896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1717 - 4.5680 0.90 1280 144 0.1932 0.1848 REMARK 3 2 4.5680 - 3.6263 0.96 1271 142 0.1502 0.1645 REMARK 3 3 3.6263 - 3.1681 0.96 1276 141 0.1605 0.2031 REMARK 3 4 3.1681 - 2.8785 0.93 1209 134 0.1806 0.2398 REMARK 3 5 2.8785 - 2.6722 0.96 1254 140 0.1714 0.2203 REMARK 3 6 2.6722 - 2.5147 0.98 1280 141 0.1698 0.1863 REMARK 3 7 2.5147 - 2.3888 0.97 1255 141 0.1646 0.2071 REMARK 3 8 2.3888 - 2.2848 0.98 1252 138 0.1513 0.1918 REMARK 3 9 2.2848 - 2.1968 0.99 1257 141 0.1511 0.1726 REMARK 3 10 2.1968 - 2.1210 0.99 1272 141 0.1470 0.2049 REMARK 3 11 2.1210 - 2.0547 0.95 1211 135 0.1469 0.1754 REMARK 3 12 2.0547 - 1.9960 0.97 1252 137 0.1442 0.1823 REMARK 3 13 1.9960 - 1.9434 0.98 1253 139 0.1474 0.1938 REMARK 3 14 1.9434 - 1.8960 0.99 1246 140 0.1547 0.2159 REMARK 3 15 1.8960 - 1.8529 0.97 1237 137 0.1727 0.2357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4043 REMARK 3 ANGLE : 1.548 7226 REMARK 3 CHIRALITY : 0.082 288 REMARK 3 PLANARITY : 0.009 780 REMARK 3 DIHEDRAL : 13.337 1959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 19744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4906 - 4.4563 0.89 1355 151 0.1947 0.2051 REMARK 3 2 4.4563 - 3.5384 0.94 1355 151 0.1566 0.1986 REMARK 3 3 3.5384 - 3.0915 0.97 1372 152 0.1857 0.2176 REMARK 3 4 3.0915 - 2.8090 0.97 1381 155 0.2013 0.3013 REMARK 3 5 2.8090 - 2.6077 0.96 1333 146 0.1993 0.2471 REMARK 3 6 2.6077 - 2.4540 0.94 1311 147 0.2042 0.2467 REMARK 3 7 2.4540 - 2.3312 0.93 1283 142 0.2169 0.2452 REMARK 3 8 2.3312 - 2.2297 0.89 1239 137 0.2191 0.2532 REMARK 3 9 2.2297 - 2.1439 0.89 1232 137 0.2195 0.2430 REMARK 3 10 2.1439 - 2.0699 0.89 1215 136 0.2169 0.2645 REMARK 3 11 2.0699 - 2.0052 0.87 1187 132 0.2303 0.2925 REMARK 3 12 2.0052 - 1.9479 0.85 1180 130 0.2519 0.2935 REMARK 3 13 1.9479 - 1.8966 0.86 1175 131 0.2599 0.2882 REMARK 3 14 1.8966 - 1.8503 0.84 1151 128 0.3159 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4043 REMARK 3 ANGLE : 1.548 7226 REMARK 3 CHIRALITY : 0.082 288 REMARK 3 PLANARITY : 0.009 780 REMARK 3 DIHEDRAL : 13.337 1959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 33.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5CM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 08-SEP-16 REMARK 230 TEMPERATURE (KELVIN) : 298.0 REMARK 230 PH : NULL REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : BIODIFF REMARK 230 WAVELENGTH OR RANGE (A) : 2.67 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : BIODIFF REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, XDS REMARK 230 DATA SCALING SOFTWARE : HKL-2000, SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 19760 REMARK 230 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 230 RESOLUTION RANGE LOW (A) : 43.610 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 230 DATA REDUNDANCY : 2.000 REMARK 230 R MERGE (I) : 0.16400 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 3.7000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 230 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 230 DATA REDUNDANCY IN SHELL : 1.70 REMARK 230 R MERGE FOR SHELL (I) : 0.52600 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 1.200 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : REFMAC REMARK 230 STARTING MODEL: 5CM1 REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M SODIUM MALONATE PD5.9, 40MG/ML REMARK 280 PROTEIN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 106 D2 HOH B 209 1.31 REMARK 500 DG1 THR B 106 D2 HOH B 209 1.31 REMARK 500 HZ2 LYS A 76 OE2 GLU A 89 1.54 REMARK 500 DZ2 LYS A 76 OE2 GLU A 89 1.54 REMARK 500 DZ2 LYS B 76 OE2 GLU B 89 1.56 REMARK 500 DZ1 LYS A 48 O HOH A 201 1.56 REMARK 500 HZ3 LYS A 48 O HOH A 201 1.59 REMARK 500 NZ LYS A 48 O HOH A 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 66 CB GLU A 66 CG -0.160 REMARK 500 GLU A 72 CB GLU A 72 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 39 15.10 81.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NFE A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5NFE B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 5NFE GLY A -2 UNP P02766 EXPRESSION TAG SEQADV 5NFE ALA A -1 UNP P02766 EXPRESSION TAG SEQADV 5NFE MET A 0 UNP P02766 EXPRESSION TAG SEQADV 5NFE MET A 119 UNP P02766 THR 139 CONFLICT SEQADV 5NFE GLY B -2 UNP P02766 EXPRESSION TAG SEQADV 5NFE ALA B -1 UNP P02766 EXPRESSION TAG SEQADV 5NFE MET B 0 UNP P02766 EXPRESSION TAG SEQADV 5NFE MET B 119 UNP P02766 THR 139 CONFLICT SEQRES 1 A 130 GLY ALA MET GLY PRO THR GLY THR GLY GLU SER LYS CYS SEQRES 2 A 130 PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER SEQRES 3 A 130 PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA SEQRES 4 A 130 ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SEQRES 5 A 130 SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU SEQRES 6 A 130 GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR SEQRES 7 A 130 LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS SEQRES 8 A 130 GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY SEQRES 9 A 130 PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO TYR SEQRES 10 A 130 SER TYR SER THR MET ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 130 GLY ALA MET GLY PRO THR GLY THR GLY GLU SER LYS CYS SEQRES 2 B 130 PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER SEQRES 3 B 130 PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA SEQRES 4 B 130 ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SEQRES 5 B 130 SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU SEQRES 6 B 130 GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR SEQRES 7 B 130 LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE HIS SEQRES 8 B 130 GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY SEQRES 9 B 130 PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO TYR SEQRES 10 B 130 SER TYR SER THR MET ALA VAL VAL THR ASN PRO LYS GLU FORMUL 3 HOH *38(H2 O) HELIX 1 AA1 ASP A 74 LEU A 82 1 9 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O MET A 119 N ALA A 108 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N LEU B 110 O SER B 117 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O MET A 119 N ALA A 108 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N LEU B 110 O SER B 117 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AA3 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N TYR B 69 O PHE B 95 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 CRYST1 43.710 86.320 65.338 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015305 0.00000 TER 1966 PRO A 125 TER 3933 PRO B 125 HETATM 3934 O HOH A 201 15.907 -17.480 1.667 1.00 56.17 O HETATM 3935 D1 HOH A 201 16.326 -17.954 2.387 1.00 44.09 D HETATM 3936 O HOH A 202 -0.044 -28.115 8.842 1.00 52.01 O HETATM 3937 O HOH A 203 -0.685 -12.615 16.115 1.00 36.29 O HETATM 3938 D1 HOH A 203 -1.018 -12.294 16.945 1.00 32.32 D HETATM 3939 D2 HOH A 203 -1.360 -13.190 15.774 1.00 30.71 D HETATM 3940 O HOH A 204 -4.534 -8.579 10.252 1.00 30.58 O HETATM 3941 D1 HOH A 204 -5.022 -7.891 10.714 1.00 28.82 D HETATM 3942 D2 HOH A 204 -4.731 -8.507 9.319 1.00 30.83 D HETATM 3943 O HOH A 205 -14.676 -11.666 5.462 1.00 46.86 O HETATM 3944 D1 HOH A 205 -14.689 -12.360 6.119 1.00 36.30 D HETATM 3945 D2 HOH A 205 -15.506 -11.695 4.983 1.00 40.13 D HETATM 3946 O HOH A 206 14.102 -5.598 4.403 1.00 38.03 O HETATM 3947 D1 HOH A 206 13.924 -5.715 5.334 1.00 30.93 D HETATM 3948 D2 HOH A 206 13.498 -4.933 4.075 1.00 39.63 D HETATM 3949 O HOH A 207 -11.864 -24.001 7.149 1.00 32.78 O HETATM 3950 D1 HOH A 207 -11.147 -24.617 7.301 1.00 30.00 D HETATM 3951 D2 HOH A 207 -12.057 -23.968 6.211 1.00 32.35 D HETATM 3952 O HOH A 208 9.864 -11.713 15.701 1.00 25.90 O HETATM 3953 D1 HOH A 208 9.707 -10.971 16.261 1.00 25.88 D HETATM 3954 D2 HOH A 208 9.673 -12.469 16.250 1.00 21.75 D HETATM 3955 O HOH A 209 -9.827 -21.563 14.624 1.00 54.10 O HETATM 3956 D1 HOH A 209 -8.996 -21.410 15.067 1.00 46.55 D HETATM 3957 D2 HOH A 209 -10.316 -20.750 14.687 1.00 39.44 D HETATM 3958 O HOH A 210 16.497 3.464 12.506 1.00 42.28 O HETATM 3959 D1 HOH A 210 16.852 3.244 11.654 1.00 37.87 D HETATM 3960 O HOH A 211 -13.368 -12.554 9.002 1.00 32.76 O HETATM 3961 D1 HOH A 211 -12.540 -12.174 8.783 1.00 34.69 D HETATM 3962 O HOH A 212 -3.608 -14.258 -4.062 1.00 33.44 O HETATM 3963 D1 HOH A 212 -2.724 -14.473 -3.803 1.00 35.55 D HETATM 3964 D2 HOH A 212 -3.545 -13.561 -4.711 1.00 40.20 D HETATM 3965 O HOH A 213 8.973 -9.630 17.294 1.00 26.95 O HETATM 3966 D1 HOH A 213 9.544 -9.499 18.036 1.00 29.30 D HETATM 3967 D2 HOH A 213 8.125 -9.824 17.625 1.00 22.38 D HETATM 3968 O HOH A 214 3.038 -13.806 18.054 1.00 25.93 O HETATM 3969 D1 HOH A 214 3.567 -14.158 17.351 1.00 28.47 D HETATM 3970 D2 HOH A 214 2.139 -13.813 17.756 1.00 27.17 D HETATM 3971 O HOH A 215 14.408 3.759 4.920 1.00 34.39 O HETATM 3972 D1 HOH A 215 14.425 4.186 5.767 1.00 36.00 D HETATM 3973 D2 HOH A 215 13.995 4.347 4.288 1.00 30.86 D HETATM 3974 O HOH A 216 5.705 -2.223 14.954 1.00 27.26 O HETATM 3975 D1 HOH A 216 5.876 -2.746 14.185 1.00 29.17 D HETATM 3976 D2 HOH A 216 4.955 -1.677 14.749 1.00 31.29 D HETATM 3977 O HOH A 217 -17.472 -12.872 2.918 1.00 37.84 O HETATM 3978 O HOH A 218 1.505 -23.536 3.844 1.00 35.00 O HETATM 3979 D1 HOH A 218 2.310 -23.756 4.298 1.00 38.70 D HETATM 3980 D2 HOH A 218 0.885 -23.286 4.522 1.00 28.30 D HETATM 3981 O HOH A 219 -14.636 -26.941 3.141 1.00 30.86 O HETATM 3982 D1 HOH A 219 -14.062 -27.485 3.664 1.00 36.54 D HETATM 3983 D2 HOH A 219 -15.449 -26.871 3.622 1.00 31.93 D HETATM 3984 O HOH A 220 11.375 -14.711 7.253 1.00 27.47 O HETATM 3985 D1 HOH A 220 12.267 -14.908 7.532 1.00 35.60 D HETATM 3986 D2 HOH A 220 10.838 -14.563 8.028 1.00 26.95 D HETATM 3987 O HOH A 221 8.201 -8.288 14.657 1.00 22.33 O HETATM 3988 D1 HOH A 221 7.849 -7.671 15.272 1.00 23.42 D HETATM 3989 D2 HOH A 221 7.933 -9.145 14.937 1.00 26.40 D HETATM 3990 O HOH A 222 5.009 -11.480 -4.843 1.00 39.04 O HETATM 3991 D1 HOH A 222 5.248 -10.589 -5.083 1.00 34.98 D HETATM 3992 D2 HOH A 222 4.406 -11.814 -5.498 1.00 36.53 D HETATM 3993 O HOH A 223 16.337 -9.746 7.088 1.00 38.91 O HETATM 3994 D1 HOH A 223 16.091 -10.235 7.856 1.00 32.99 D HETATM 3995 O HOH A 224 -8.429 -5.626 -0.103 1.00 33.74 O HETATM 3996 D1 HOH A 224 -7.950 -6.118 0.552 1.00 36.70 D HETATM 3997 D2 HOH A 224 -9.289 -5.451 0.246 1.00 30.62 D HETATM 3998 O HOH A 225 13.769 -13.302 6.778 1.00 40.48 O HETATM 3999 D1 HOH A 225 13.261 -13.418 5.989 1.00 29.40 D HETATM 4000 O HOH A 226 2.146 -24.243 1.480 1.00 37.08 O HETATM 4001 D1 HOH A 226 1.575 -24.573 0.795 1.00 33.69 D HETATM 4002 O HOH B 201 -11.547 -10.482 16.884 1.00 25.86 O HETATM 4003 D1 HOH B 201 -11.227 -9.646 16.594 1.00 25.34 D HETATM 4004 D2 HOH B 201 -11.713 -10.964 16.087 1.00 21.61 D HETATM 4005 O HOH B 202 -13.036 -14.327 11.449 1.00 33.94 O HETATM 4006 D1 HOH B 202 -12.300 -13.876 11.859 1.00 28.93 D HETATM 4007 D2 HOH B 202 -13.464 -14.822 12.144 1.00 31.52 D HETATM 4008 O HOH B 203 -10.328 -8.563 15.225 1.00 30.25 O HETATM 4009 D1 HOH B 203 -9.539 -8.350 15.675 1.00 21.92 D HETATM 4010 D2 HOH B 203 -10.603 -7.798 14.734 1.00 22.87 D HETATM 4011 O HOH B 204 3.415 -9.111 22.426 1.00 31.11 O HETATM 4012 D1 HOH B 204 3.552 -8.876 23.338 1.00 31.48 D HETATM 4013 D2 HOH B 204 2.477 -9.083 22.244 1.00 30.33 D HETATM 4014 O HOH B 205 -5.099 -13.299 14.459 1.00 26.97 O HETATM 4015 D1 HOH B 205 -4.620 -13.807 15.105 1.00 28.78 D HETATM 4016 D2 HOH B 205 -5.930 -13.091 14.837 1.00 29.62 D HETATM 4017 O HOH B 206 -9.262 -7.228 17.844 1.00 24.48 O HETATM 4018 D1 HOH B 206 -8.737 -7.944 17.533 1.00 31.83 D HETATM 4019 D2 HOH B 206 -9.503 -6.706 17.093 1.00 20.11 D HETATM 4020 O HOH B 207 13.150 -21.065 21.382 1.00 47.05 O HETATM 4021 O HOH B 208 -0.441 -18.633 39.855 1.00 53.73 O HETATM 4022 O HOH B 209 7.311 -6.170 32.568 1.00 38.03 O HETATM 4023 D1 HOH B 209 7.823 -6.871 32.176 1.00 31.53 D HETATM 4024 D2 HOH B 209 6.412 -6.491 32.640 1.00 37.97 D HETATM 4025 O HOH B 210 -13.427 -13.282 25.395 1.00 38.98 O HETATM 4026 D1 HOH B 210 -13.220 -12.576 24.792 1.00 33.41 D HETATM 4027 D2 HOH B 210 -14.374 -13.370 25.402 1.00 36.36 D HETATM 4028 O HOH B 211 -9.416 -15.318 35.766 1.00 40.81 O HETATM 4029 D1 HOH B 211 -8.661 -14.969 36.228 1.00 33.61 D HETATM 4030 D2 HOH B 211 -10.147 -14.737 35.957 1.00 36.21 D HETATM 4031 O HOH B 212 -14.434 -9.985 8.094 1.00 56.90 O HETATM 4032 D1 HOH B 212 -13.932 -10.268 7.329 1.00 36.76 D HETATM 4033 D2 HOH B 212 -15.139 -9.438 7.743 1.00 41.90 D MASTER 417 0 0 2 24 0 0 6 1832 2 0 20 END