data_5NFI # _entry.id 5NFI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NFI WWPDB D_1200004020 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NFI _pdbx_database_status.recvd_initial_deposition_date 2017-03-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hall, M.' 1 ? 'Hasegawa, Y.' 2 ? 'Persson, K.' 3 ? 'Yoshimura, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 1793 _citation.page_last 1793 _citation.title ;Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-018-20067-z _citation.pdbx_database_id_PubMed 29379120 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hall, M.' 1 primary 'Hasegawa, Y.' 2 primary 'Yoshimura, F.' 3 primary 'Persson, K.' 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 94.760 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5NFI _cell.details ? _cell.formula_units_Z ? _cell.length_a 101.600 _cell.length_a_esd ? _cell.length_b 83.210 _cell.length_b_esd ? _cell.length_c 38.740 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Minor fimbrium anchoring subunit Mfa2' 31953.322 1 ? ? ? ;MKHHHHHHPMSDYDIPTTENLYFQGAMDKMIYDNYDDCPRGVYVNFYS QTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAW GNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQ YIHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDGTVAKADSTYYPGETKVV GDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSGQYAQNINLRCINDFDIRLVAHHCNC PDDTYVVVQIWINGWLIHSYEIEL ; 2 non-polymer syn 'IODIDE ION' 126.904 2 ? ? ? ? 3 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Minor fimbrial antigen 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;CPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNI GEIKIGETTKQQVL(MSE)RLKQDGKWATNIDGTTLWYATSPVVELKN(MSE)EDGADQYIHTRANLREYTNRVTVSVDS LPHPENYEIKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGA ILSSQYAQNINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSY ; _entity_poly.pdbx_seq_one_letter_code_can ;CPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNI GEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYE IKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQ NINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSY ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 PRO n 1 3 ARG n 1 4 GLY n 1 5 VAL n 1 6 TYR n 1 7 VAL n 1 8 ASN n 1 9 PHE n 1 10 TYR n 1 11 SER n 1 12 GLN n 1 13 THR n 1 14 GLU n 1 15 CYS n 1 16 ALA n 1 17 GLU n 1 18 ASN n 1 19 PRO n 1 20 SER n 1 21 TYR n 1 22 PRO n 1 23 ALA n 1 24 GLU n 1 25 VAL n 1 26 ALA n 1 27 ARG n 1 28 LEU n 1 29 ASN n 1 30 VAL n 1 31 TYR n 1 32 ALA n 1 33 PHE n 1 34 ASP n 1 35 LYS n 1 36 ASP n 1 37 GLY n 1 38 ILE n 1 39 LEU n 1 40 ARG n 1 41 SER n 1 42 ALA n 1 43 ASN n 1 44 VAL n 1 45 PHE n 1 46 GLU n 1 47 ASP n 1 48 VAL n 1 49 GLN n 1 50 LEU n 1 51 SER n 1 52 ALA n 1 53 ALA n 1 54 LYS n 1 55 GLU n 1 56 TRP n 1 57 LEU n 1 58 ILE n 1 59 PRO n 1 60 LEU n 1 61 GLU n 1 62 LYS n 1 63 ASP n 1 64 GLY n 1 65 LEU n 1 66 TYR n 1 67 THR n 1 68 ILE n 1 69 PHE n 1 70 ALA n 1 71 TRP n 1 72 GLY n 1 73 ASN n 1 74 ILE n 1 75 ASP n 1 76 ASP n 1 77 HIS n 1 78 TYR n 1 79 ASN n 1 80 ILE n 1 81 GLY n 1 82 GLU n 1 83 ILE n 1 84 LYS n 1 85 ILE n 1 86 GLY n 1 87 GLU n 1 88 THR n 1 89 THR n 1 90 LYS n 1 91 GLN n 1 92 GLN n 1 93 VAL n 1 94 LEU n 1 95 MSE n 1 96 ARG n 1 97 LEU n 1 98 LYS n 1 99 GLN n 1 100 ASP n 1 101 GLY n 1 102 LYS n 1 103 TRP n 1 104 ALA n 1 105 THR n 1 106 ASN n 1 107 ILE n 1 108 ASP n 1 109 GLY n 1 110 THR n 1 111 THR n 1 112 LEU n 1 113 TRP n 1 114 TYR n 1 115 ALA n 1 116 THR n 1 117 SER n 1 118 PRO n 1 119 VAL n 1 120 VAL n 1 121 GLU n 1 122 LEU n 1 123 LYS n 1 124 ASN n 1 125 MSE n 1 126 GLU n 1 127 ASP n 1 128 GLY n 1 129 ALA n 1 130 ASP n 1 131 GLN n 1 132 TYR n 1 133 ILE n 1 134 HIS n 1 135 THR n 1 136 ARG n 1 137 ALA n 1 138 ASN n 1 139 LEU n 1 140 ARG n 1 141 GLU n 1 142 TYR n 1 143 THR n 1 144 ASN n 1 145 ARG n 1 146 VAL n 1 147 THR n 1 148 VAL n 1 149 SER n 1 150 VAL n 1 151 ASP n 1 152 SER n 1 153 LEU n 1 154 PRO n 1 155 HIS n 1 156 PRO n 1 157 GLU n 1 158 ASN n 1 159 TYR n 1 160 GLU n 1 161 ILE n 1 162 LYS n 1 163 LEU n 1 164 ALA n 1 165 SER n 1 166 SER n 1 167 ASN n 1 168 GLY n 1 169 SER n 1 170 TYR n 1 171 ARG n 1 172 PHE n 1 173 ASP n 1 174 GLY n 1 175 THR n 1 176 VAL n 1 177 ALA n 1 178 LYS n 1 179 ALA n 1 180 ASP n 1 181 SER n 1 182 THR n 1 183 TYR n 1 184 TYR n 1 185 PRO n 1 186 GLY n 1 187 GLU n 1 188 THR n 1 189 LYS n 1 190 VAL n 1 191 VAL n 1 192 GLY n 1 193 ASP n 1 194 SER n 1 195 THR n 1 196 CYS n 1 197 ARG n 1 198 ALA n 1 199 PHE n 1 200 PHE n 1 201 THR n 1 202 THR n 1 203 LEU n 1 204 LYS n 1 205 LEU n 1 206 GLU n 1 207 SER n 1 208 GLY n 1 209 HIS n 1 210 GLU n 1 211 ASN n 1 212 THR n 1 213 LEU n 1 214 SER n 1 215 VAL n 1 216 THR n 1 217 HIS n 1 218 LYS n 1 219 PRO n 1 220 THR n 1 221 GLY n 1 222 ARG n 1 223 GLU n 1 224 ILE n 1 225 PHE n 1 226 ARG n 1 227 THR n 1 228 ASP n 1 229 LEU n 1 230 VAL n 1 231 GLY n 1 232 ALA n 1 233 ILE n 1 234 LEU n 1 235 SER n 1 236 SER n 1 237 GLN n 1 238 TYR n 1 239 ALA n 1 240 GLN n 1 241 ASN n 1 242 ILE n 1 243 ASN n 1 244 LEU n 1 245 ARG n 1 246 CYS n 1 247 ILE n 1 248 ASN n 1 249 ASP n 1 250 PHE n 1 251 ASP n 1 252 ILE n 1 253 ARG n 1 254 LEU n 1 255 VAL n 1 256 ALA n 1 257 HIS n 1 258 HIS n 1 259 CYS n 1 260 ASN n 1 261 CYS n 1 262 PRO n 1 263 ASP n 1 264 ASP n 1 265 THR n 1 266 TYR n 1 267 VAL n 1 268 VAL n 1 269 VAL n 1 270 GLN n 1 271 ILE n 1 272 TRP n 1 273 ILE n 1 274 ASN n 1 275 GLY n 1 276 TRP n 1 277 LEU n 1 278 ILE n 1 279 HIS n 1 280 SER n 1 281 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 281 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mfa2, PGN_0288' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 431947 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33277 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MFA2_PORG3 _struct_ref.pdbx_db_accession B2RHG2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNI GEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYE IKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQ NINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSY ; _struct_ref.pdbx_align_begin 40 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NFI _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 281 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B2RHG2 _struct_ref_seq.db_align_beg 40 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 320 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 40 _struct_ref_seq.pdbx_auth_seq_align_end 320 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NFI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Bis-Tris propane pH 7.0, 20%, PEG 3350 and 0.2 M sodium iodide' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-02-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97239 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97239 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 53.280 _reflns.entry_id 5NFI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.508 _reflns.d_resolution_low 41.6050 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11043 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.7 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.508 _reflns_shell.d_res_low 2.610 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1236 _reflns_shell.percent_possible_all 99.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.832 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.408 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.664 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 134.580 _refine.B_iso_mean 64.2410 _refine.B_iso_min 35.330 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NFI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5080 _refine.ls_d_res_low 41.6050 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11041 _refine.ls_number_reflns_R_free 529 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5900 _refine.ls_percent_reflns_R_free 4.7900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1997 _refine.ls_R_factor_R_free 0.2626 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1966 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.7800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.5080 _refine_hist.d_res_low 41.6050 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 2242 _refine_hist.pdbx_number_residues_total 277 _refine_hist.pdbx_B_iso_mean_ligand 56.31 _refine_hist.pdbx_B_iso_mean_solvent 53.42 _refine_hist.pdbx_number_atoms_protein 2213 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 2267 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.218 ? 3084 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.045 ? 342 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 398 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.850 ? 811 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.5081 2.7604 2719 . 121 2598 99.0000 . . . 0.3535 . 0.3025 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.7604 3.1598 2747 . 128 2619 100.0000 . . . 0.3280 . 0.2434 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 3.1598 3.9805 2764 . 145 2619 100.0000 . . . 0.2703 . 0.1945 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 3.9805 41.6107 2811 . 135 2676 100.0000 . . . 0.2264 . 0.1656 . . . . . . 4 . . . # _struct.entry_id 5NFI _struct.title 'The fimbrial anchor protein Mfa2 from Porphyromonas gingivalis' _struct.pdbx_descriptor 'Minor fimbrium subunit Mfa1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NFI _struct_keywords.text 'FIMBRIA, ADHESIN, PERIODONTITIS, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 155 ? GLU A 157 ? HIS B 194 GLU B 196 5 ? 3 HELX_P HELX_P2 AA2 LEU A 229 ? LEU A 234 ? LEU B 268 LEU B 273 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 246 SG ? ? B CYS 54 B CYS 285 1_555 ? ? ? ? ? ? ? 2.035 ? disulf2 disulf ? ? A CYS 259 SG ? ? ? 1_555 A CYS 261 SG ? ? B CYS 298 B CYS 300 1_555 ? ? ? ? ? ? ? 2.044 ? covale1 covale both ? A LEU 94 C ? ? ? 1_555 A MSE 95 N ? ? B LEU 133 B MSE 134 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 95 C ? ? ? 1_555 A ARG 96 N ? ? B MSE 134 B ARG 135 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A ASN 124 C ? ? ? 1_555 A MSE 125 N ? ? B ASN 163 B MSE 164 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 125 C ? ? ? 1_555 A GLU 126 N ? ? B MSE 164 B GLU 165 1_555 ? ? ? ? ? ? ? 1.330 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 240 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 279 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 241 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 280 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 23.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 5 ? AA4 ? 3 ? AA5 ? 2 ? AA6 ? 6 ? AA7 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 56 ? LEU A 60 ? TRP B 95 LEU B 99 AA1 2 ARG A 3 ? TYR A 10 ? ARG B 42 TYR B 49 AA1 3 ILE A 133 ? ASN A 138 ? ILE B 172 ASN B 177 AA2 1 LEU A 39 ? PHE A 45 ? LEU B 78 PHE B 84 AA2 2 LEU A 28 ? PHE A 33 ? LEU B 67 PHE B 72 AA2 3 GLY A 64 ? GLY A 72 ? GLY B 103 GLY B 111 AA2 4 VAL A 120 ? LEU A 122 ? VAL B 159 LEU B 161 AA3 1 LEU A 39 ? PHE A 45 ? LEU B 78 PHE B 84 AA3 2 LEU A 28 ? PHE A 33 ? LEU B 67 PHE B 72 AA3 3 GLY A 64 ? GLY A 72 ? GLY B 103 GLY B 111 AA3 4 TRP A 113 ? THR A 116 ? TRP B 152 THR B 155 AA3 5 ARG A 140 ? GLU A 141 ? ARG B 179 GLU B 180 AA4 1 TYR A 78 ? ILE A 80 ? TYR B 117 ILE B 119 AA4 2 VAL A 93 ? LEU A 97 ? VAL B 132 LEU B 136 AA4 3 SER A 169 ? ARG A 171 ? SER B 208 ARG B 210 AA5 1 GLN A 99 ? ASP A 100 ? GLN B 138 ASP B 139 AA5 2 TRP A 103 ? ALA A 104 ? TRP B 142 ALA B 143 AA6 1 GLU A 187 ? VAL A 190 ? GLU B 226 VAL B 229 AA6 2 CYS A 196 ? THR A 202 ? CYS B 235 THR B 241 AA6 3 ASN A 144 ? ASP A 151 ? ASN B 183 ASP B 190 AA6 4 ASP A 249 ? HIS A 258 ? ASP B 288 HIS B 297 AA6 5 TYR A 266 ? ILE A 273 ? TYR B 305 ILE B 312 AA6 6 TRP A 276 ? SER A 280 ? TRP B 315 SER B 319 AA7 1 THR A 182 ? TYR A 184 ? THR B 221 TYR B 223 AA7 2 TYR A 159 ? SER A 165 ? TYR B 198 SER B 204 AA7 3 ASN A 211 ? HIS A 217 ? ASN B 250 HIS B 256 AA7 4 ARG A 222 ? ASP A 228 ? ARG B 261 ASP B 267 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 58 ? O ILE B 97 N VAL A 5 ? N VAL B 44 AA1 2 3 N TYR A 6 ? N TYR B 45 O ILE A 133 ? O ILE B 172 AA2 1 2 O ARG A 40 ? O ARG B 79 N ALA A 32 ? N ALA B 71 AA2 2 3 N TYR A 31 ? N TYR B 70 O PHE A 69 ? O PHE B 108 AA2 3 4 N TYR A 66 ? N TYR B 105 O VAL A 120 ? O VAL B 159 AA3 1 2 O ARG A 40 ? O ARG B 79 N ALA A 32 ? N ALA B 71 AA3 2 3 N TYR A 31 ? N TYR B 70 O PHE A 69 ? O PHE B 108 AA3 3 4 N ALA A 70 ? N ALA B 109 O ALA A 115 ? O ALA B 154 AA3 4 5 N TYR A 114 ? N TYR B 153 O ARG A 140 ? O ARG B 179 AA4 1 2 N ASN A 79 ? N ASN B 118 O ARG A 96 ? O ARG B 135 AA4 2 3 N MSE A 95 ? N MSE B 134 O TYR A 170 ? O TYR B 209 AA5 1 2 N ASP A 100 ? N ASP B 139 O TRP A 103 ? O TRP B 142 AA6 1 2 N LYS A 189 ? N LYS B 228 O ARG A 197 ? O ARG B 236 AA6 2 3 O PHE A 200 ? O PHE B 239 N VAL A 146 ? N VAL B 185 AA6 3 4 N SER A 149 ? N SER B 188 O LEU A 254 ? O LEU B 293 AA6 4 5 N ARG A 253 ? N ARG B 292 O TRP A 272 ? O TRP B 311 AA6 5 6 N ILE A 271 ? N ILE B 310 O HIS A 279 ? O HIS B 318 AA7 1 2 O TYR A 184 ? O TYR B 223 N LEU A 163 ? N LEU B 202 AA7 2 3 N ALA A 164 ? N ALA B 203 O THR A 212 ? O THR B 251 AA7 3 4 N HIS A 217 ? N HIS B 256 O ARG A 222 ? O ARG B 261 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B IOD 401 ? 2 'binding site for residue IOD B 401' AC2 Software B IOD 402 ? 3 'binding site for residue IOD B 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR A 31 ? TYR B 70 . ? 1_555 ? 2 AC1 2 VAL A 44 ? VAL B 83 . ? 1_555 ? 3 AC2 3 TYR A 159 ? TYR B 198 . ? 1_555 ? 4 AC2 3 THR A 265 ? THR B 304 . ? 1_555 ? 5 AC2 3 TYR A 266 ? TYR B 305 . ? 1_555 ? # _atom_sites.entry_id 5NFI _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000820 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012018 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025902 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C I N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 40 40 CYS CYS B . n A 1 2 PRO 2 41 41 PRO PRO B . n A 1 3 ARG 3 42 42 ARG ARG B . n A 1 4 GLY 4 43 43 GLY GLY B . n A 1 5 VAL 5 44 44 VAL VAL B . n A 1 6 TYR 6 45 45 TYR TYR B . n A 1 7 VAL 7 46 46 VAL VAL B . n A 1 8 ASN 8 47 47 ASN ASN B . n A 1 9 PHE 9 48 48 PHE PHE B . n A 1 10 TYR 10 49 49 TYR TYR B . n A 1 11 SER 11 50 50 SER SER B . n A 1 12 GLN 12 51 51 GLN GLN B . n A 1 13 THR 13 52 52 THR THR B . n A 1 14 GLU 14 53 53 GLU GLU B . n A 1 15 CYS 15 54 54 CYS CYS B . n A 1 16 ALA 16 55 55 ALA ALA B . n A 1 17 GLU 17 56 56 GLU GLU B . n A 1 18 ASN 18 57 57 ASN ASN B . n A 1 19 PRO 19 58 58 PRO PRO B . n A 1 20 SER 20 59 59 SER SER B . n A 1 21 TYR 21 60 60 TYR TYR B . n A 1 22 PRO 22 61 61 PRO PRO B . n A 1 23 ALA 23 62 62 ALA ALA B . n A 1 24 GLU 24 63 63 GLU GLU B . n A 1 25 VAL 25 64 64 VAL VAL B . n A 1 26 ALA 26 65 65 ALA ALA B . n A 1 27 ARG 27 66 66 ARG ARG B . n A 1 28 LEU 28 67 67 LEU LEU B . n A 1 29 ASN 29 68 68 ASN ASN B . n A 1 30 VAL 30 69 69 VAL VAL B . n A 1 31 TYR 31 70 70 TYR TYR B . n A 1 32 ALA 32 71 71 ALA ALA B . n A 1 33 PHE 33 72 72 PHE PHE B . n A 1 34 ASP 34 73 73 ASP ASP B . n A 1 35 LYS 35 74 74 LYS LYS B . n A 1 36 ASP 36 75 75 ASP ASP B . n A 1 37 GLY 37 76 76 GLY GLY B . n A 1 38 ILE 38 77 77 ILE ILE B . n A 1 39 LEU 39 78 78 LEU LEU B . n A 1 40 ARG 40 79 79 ARG ARG B . n A 1 41 SER 41 80 80 SER SER B . n A 1 42 ALA 42 81 81 ALA ALA B . n A 1 43 ASN 43 82 82 ASN ASN B . n A 1 44 VAL 44 83 83 VAL VAL B . n A 1 45 PHE 45 84 84 PHE PHE B . n A 1 46 GLU 46 85 85 GLU GLU B . n A 1 47 ASP 47 86 86 ASP ASP B . n A 1 48 VAL 48 87 87 VAL VAL B . n A 1 49 GLN 49 88 88 GLN GLN B . n A 1 50 LEU 50 89 89 LEU LEU B . n A 1 51 SER 51 90 90 SER SER B . n A 1 52 ALA 52 91 91 ALA ALA B . n A 1 53 ALA 53 92 92 ALA ALA B . n A 1 54 LYS 54 93 93 LYS LYS B . n A 1 55 GLU 55 94 94 GLU GLU B . n A 1 56 TRP 56 95 95 TRP TRP B . n A 1 57 LEU 57 96 96 LEU LEU B . n A 1 58 ILE 58 97 97 ILE ILE B . n A 1 59 PRO 59 98 98 PRO PRO B . n A 1 60 LEU 60 99 99 LEU LEU B . n A 1 61 GLU 61 100 100 GLU GLU B . n A 1 62 LYS 62 101 101 LYS LYS B . n A 1 63 ASP 63 102 102 ASP ASP B . n A 1 64 GLY 64 103 103 GLY GLY B . n A 1 65 LEU 65 104 104 LEU LEU B . n A 1 66 TYR 66 105 105 TYR TYR B . n A 1 67 THR 67 106 106 THR THR B . n A 1 68 ILE 68 107 107 ILE ILE B . n A 1 69 PHE 69 108 108 PHE PHE B . n A 1 70 ALA 70 109 109 ALA ALA B . n A 1 71 TRP 71 110 110 TRP TRP B . n A 1 72 GLY 72 111 111 GLY GLY B . n A 1 73 ASN 73 112 112 ASN ASN B . n A 1 74 ILE 74 113 113 ILE ILE B . n A 1 75 ASP 75 114 114 ASP ASP B . n A 1 76 ASP 76 115 115 ASP ASP B . n A 1 77 HIS 77 116 116 HIS HIS B . n A 1 78 TYR 78 117 117 TYR TYR B . n A 1 79 ASN 79 118 118 ASN ASN B . n A 1 80 ILE 80 119 119 ILE ILE B . n A 1 81 GLY 81 120 120 GLY GLY B . n A 1 82 GLU 82 121 121 GLU GLU B . n A 1 83 ILE 83 122 122 ILE ILE B . n A 1 84 LYS 84 123 123 LYS LYS B . n A 1 85 ILE 85 124 124 ILE ILE B . n A 1 86 GLY 86 125 125 GLY GLY B . n A 1 87 GLU 87 126 126 GLU GLU B . n A 1 88 THR 88 127 127 THR THR B . n A 1 89 THR 89 128 128 THR THR B . n A 1 90 LYS 90 129 129 LYS LYS B . n A 1 91 GLN 91 130 130 GLN GLN B . n A 1 92 GLN 92 131 131 GLN GLN B . n A 1 93 VAL 93 132 132 VAL VAL B . n A 1 94 LEU 94 133 133 LEU LEU B . n A 1 95 MSE 95 134 134 MSE MSE B . n A 1 96 ARG 96 135 135 ARG ARG B . n A 1 97 LEU 97 136 136 LEU LEU B . n A 1 98 LYS 98 137 137 LYS LYS B . n A 1 99 GLN 99 138 138 GLN GLN B . n A 1 100 ASP 100 139 139 ASP ASP B . n A 1 101 GLY 101 140 140 GLY GLY B . n A 1 102 LYS 102 141 141 LYS LYS B . n A 1 103 TRP 103 142 142 TRP TRP B . n A 1 104 ALA 104 143 143 ALA ALA B . n A 1 105 THR 105 144 144 THR THR B . n A 1 106 ASN 106 145 145 ASN ASN B . n A 1 107 ILE 107 146 146 ILE ILE B . n A 1 108 ASP 108 147 147 ASP ASP B . n A 1 109 GLY 109 148 148 GLY GLY B . n A 1 110 THR 110 149 149 THR THR B . n A 1 111 THR 111 150 150 THR THR B . n A 1 112 LEU 112 151 151 LEU LEU B . n A 1 113 TRP 113 152 152 TRP TRP B . n A 1 114 TYR 114 153 153 TYR TYR B . n A 1 115 ALA 115 154 154 ALA ALA B . n A 1 116 THR 116 155 155 THR THR B . n A 1 117 SER 117 156 156 SER SER B . n A 1 118 PRO 118 157 157 PRO PRO B . n A 1 119 VAL 119 158 158 VAL VAL B . n A 1 120 VAL 120 159 159 VAL VAL B . n A 1 121 GLU 121 160 160 GLU GLU B . n A 1 122 LEU 122 161 161 LEU LEU B . n A 1 123 LYS 123 162 162 LYS LYS B . n A 1 124 ASN 124 163 163 ASN ASN B . n A 1 125 MSE 125 164 164 MSE MSE B . n A 1 126 GLU 126 165 165 GLU GLU B . n A 1 127 ASP 127 166 166 ASP ASP B . n A 1 128 GLY 128 167 167 GLY GLY B . n A 1 129 ALA 129 168 168 ALA ALA B . n A 1 130 ASP 130 169 169 ASP ASP B . n A 1 131 GLN 131 170 170 GLN GLN B . n A 1 132 TYR 132 171 171 TYR TYR B . n A 1 133 ILE 133 172 172 ILE ILE B . n A 1 134 HIS 134 173 173 HIS HIS B . n A 1 135 THR 135 174 174 THR THR B . n A 1 136 ARG 136 175 175 ARG ARG B . n A 1 137 ALA 137 176 176 ALA ALA B . n A 1 138 ASN 138 177 177 ASN ASN B . n A 1 139 LEU 139 178 178 LEU LEU B . n A 1 140 ARG 140 179 179 ARG ARG B . n A 1 141 GLU 141 180 180 GLU GLU B . n A 1 142 TYR 142 181 181 TYR TYR B . n A 1 143 THR 143 182 182 THR THR B . n A 1 144 ASN 144 183 183 ASN ASN B . n A 1 145 ARG 145 184 184 ARG ARG B . n A 1 146 VAL 146 185 185 VAL VAL B . n A 1 147 THR 147 186 186 THR THR B . n A 1 148 VAL 148 187 187 VAL VAL B . n A 1 149 SER 149 188 188 SER SER B . n A 1 150 VAL 150 189 189 VAL VAL B . n A 1 151 ASP 151 190 190 ASP ASP B . n A 1 152 SER 152 191 191 SER SER B . n A 1 153 LEU 153 192 192 LEU LEU B . n A 1 154 PRO 154 193 193 PRO PRO B . n A 1 155 HIS 155 194 194 HIS HIS B . n A 1 156 PRO 156 195 195 PRO PRO B . n A 1 157 GLU 157 196 196 GLU GLU B . n A 1 158 ASN 158 197 197 ASN ASN B . n A 1 159 TYR 159 198 198 TYR TYR B . n A 1 160 GLU 160 199 199 GLU GLU B . n A 1 161 ILE 161 200 200 ILE ILE B . n A 1 162 LYS 162 201 201 LYS LYS B . n A 1 163 LEU 163 202 202 LEU LEU B . n A 1 164 ALA 164 203 203 ALA ALA B . n A 1 165 SER 165 204 204 SER SER B . n A 1 166 SER 166 205 205 SER SER B . n A 1 167 ASN 167 206 206 ASN ASN B . n A 1 168 GLY 168 207 207 GLY GLY B . n A 1 169 SER 169 208 208 SER SER B . n A 1 170 TYR 170 209 209 TYR TYR B . n A 1 171 ARG 171 210 210 ARG ARG B . n A 1 172 PHE 172 211 211 PHE PHE B . n A 1 173 ASP 173 212 212 ASP ASP B . n A 1 174 GLY 174 213 213 GLY GLY B . n A 1 175 THR 175 214 214 THR THR B . n A 1 176 VAL 176 215 215 VAL VAL B . n A 1 177 ALA 177 216 216 ALA ALA B . n A 1 178 LYS 178 217 217 LYS LYS B . n A 1 179 ALA 179 218 218 ALA ALA B . n A 1 180 ASP 180 219 219 ASP ASP B . n A 1 181 SER 181 220 220 SER SER B . n A 1 182 THR 182 221 221 THR THR B . n A 1 183 TYR 183 222 222 TYR TYR B . n A 1 184 TYR 184 223 223 TYR TYR B . n A 1 185 PRO 185 224 224 PRO PRO B . n A 1 186 GLY 186 225 225 GLY GLY B . n A 1 187 GLU 187 226 226 GLU GLU B . n A 1 188 THR 188 227 227 THR THR B . n A 1 189 LYS 189 228 228 LYS LYS B . n A 1 190 VAL 190 229 229 VAL VAL B . n A 1 191 VAL 191 230 230 VAL VAL B . n A 1 192 GLY 192 231 231 GLY GLY B . n A 1 193 ASP 193 232 232 ASP ASP B . n A 1 194 SER 194 233 233 SER SER B . n A 1 195 THR 195 234 234 THR THR B . n A 1 196 CYS 196 235 235 CYS CYS B . n A 1 197 ARG 197 236 236 ARG ARG B . n A 1 198 ALA 198 237 237 ALA ALA B . n A 1 199 PHE 199 238 238 PHE PHE B . n A 1 200 PHE 200 239 239 PHE PHE B . n A 1 201 THR 201 240 240 THR THR B . n A 1 202 THR 202 241 241 THR THR B . n A 1 203 LEU 203 242 242 LEU LEU B . n A 1 204 LYS 204 243 243 LYS LYS B . n A 1 205 LEU 205 244 244 LEU LEU B . n A 1 206 GLU 206 245 245 GLU GLU B . n A 1 207 SER 207 246 246 SER SER B . n A 1 208 GLY 208 247 247 GLY GLY B . n A 1 209 HIS 209 248 248 HIS HIS B . n A 1 210 GLU 210 249 249 GLU GLU B . n A 1 211 ASN 211 250 250 ASN ASN B . n A 1 212 THR 212 251 251 THR THR B . n A 1 213 LEU 213 252 252 LEU LEU B . n A 1 214 SER 214 253 253 SER SER B . n A 1 215 VAL 215 254 254 VAL VAL B . n A 1 216 THR 216 255 255 THR THR B . n A 1 217 HIS 217 256 256 HIS HIS B . n A 1 218 LYS 218 257 257 LYS LYS B . n A 1 219 PRO 219 258 258 PRO PRO B . n A 1 220 THR 220 259 259 THR THR B . n A 1 221 GLY 221 260 260 GLY GLY B . n A 1 222 ARG 222 261 261 ARG ARG B . n A 1 223 GLU 223 262 262 GLU GLU B . n A 1 224 ILE 224 263 263 ILE ILE B . n A 1 225 PHE 225 264 264 PHE PHE B . n A 1 226 ARG 226 265 265 ARG ARG B . n A 1 227 THR 227 266 266 THR THR B . n A 1 228 ASP 228 267 267 ASP ASP B . n A 1 229 LEU 229 268 268 LEU LEU B . n A 1 230 VAL 230 269 269 VAL VAL B . n A 1 231 GLY 231 270 270 GLY GLY B . n A 1 232 ALA 232 271 271 ALA ALA B . n A 1 233 ILE 233 272 272 ILE ILE B . n A 1 234 LEU 234 273 273 LEU LEU B . n A 1 235 SER 235 274 274 SER SER B . n A 1 236 SER 236 275 ? ? ? B . n A 1 237 GLN 237 276 ? ? ? B . n A 1 238 TYR 238 277 ? ? ? B . n A 1 239 ALA 239 278 ? ? ? B . n A 1 240 GLN 240 279 279 GLN GLN B . n A 1 241 ASN 241 280 280 ASN ASN B . n A 1 242 ILE 242 281 281 ILE ILE B . n A 1 243 ASN 243 282 282 ASN ASN B . n A 1 244 LEU 244 283 283 LEU LEU B . n A 1 245 ARG 245 284 284 ARG ARG B . n A 1 246 CYS 246 285 285 CYS CYS B . n A 1 247 ILE 247 286 286 ILE ILE B . n A 1 248 ASN 248 287 287 ASN ASN B . n A 1 249 ASP 249 288 288 ASP ASP B . n A 1 250 PHE 250 289 289 PHE PHE B . n A 1 251 ASP 251 290 290 ASP ASP B . n A 1 252 ILE 252 291 291 ILE ILE B . n A 1 253 ARG 253 292 292 ARG ARG B . n A 1 254 LEU 254 293 293 LEU LEU B . n A 1 255 VAL 255 294 294 VAL VAL B . n A 1 256 ALA 256 295 295 ALA ALA B . n A 1 257 HIS 257 296 296 HIS HIS B . n A 1 258 HIS 258 297 297 HIS HIS B . n A 1 259 CYS 259 298 298 CYS CYS B . n A 1 260 ASN 260 299 299 ASN ASN B . n A 1 261 CYS 261 300 300 CYS CYS B . n A 1 262 PRO 262 301 301 PRO PRO B . n A 1 263 ASP 263 302 302 ASP ASP B . n A 1 264 ASP 264 303 303 ASP ASP B . n A 1 265 THR 265 304 304 THR THR B . n A 1 266 TYR 266 305 305 TYR TYR B . n A 1 267 VAL 267 306 306 VAL VAL B . n A 1 268 VAL 268 307 307 VAL VAL B . n A 1 269 VAL 269 308 308 VAL VAL B . n A 1 270 GLN 270 309 309 GLN GLN B . n A 1 271 ILE 271 310 310 ILE ILE B . n A 1 272 TRP 272 311 311 TRP TRP B . n A 1 273 ILE 273 312 312 ILE ILE B . n A 1 274 ASN 274 313 313 ASN ASN B . n A 1 275 GLY 275 314 314 GLY GLY B . n A 1 276 TRP 276 315 315 TRP TRP B . n A 1 277 LEU 277 316 316 LEU LEU B . n A 1 278 ILE 278 317 317 ILE ILE B . n A 1 279 HIS 279 318 318 HIS HIS B . n A 1 280 SER 280 319 319 SER SER B . n A 1 281 TYR 281 320 320 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 401 2 IOD I B . C 2 IOD 1 402 3 IOD I B . D 3 HOH 1 501 15 HOH HOH B . D 3 HOH 2 502 18 HOH HOH B . D 3 HOH 3 503 46 HOH HOH B . D 3 HOH 4 504 24 HOH HOH B . D 3 HOH 5 505 25 HOH HOH B . D 3 HOH 6 506 37 HOH HOH B . D 3 HOH 7 507 6 HOH HOH B . D 3 HOH 8 508 47 HOH HOH B . D 3 HOH 9 509 45 HOH HOH B . D 3 HOH 10 510 19 HOH HOH B . D 3 HOH 11 511 3 HOH HOH B . D 3 HOH 12 512 16 HOH HOH B . D 3 HOH 13 513 38 HOH HOH B . D 3 HOH 14 514 31 HOH HOH B . D 3 HOH 15 515 35 HOH HOH B . D 3 HOH 16 516 29 HOH HOH B . D 3 HOH 17 517 36 HOH HOH B . D 3 HOH 18 518 41 HOH HOH B . D 3 HOH 19 519 44 HOH HOH B . D 3 HOH 20 520 32 HOH HOH B . D 3 HOH 21 521 28 HOH HOH B . D 3 HOH 22 522 43 HOH HOH B . D 3 HOH 23 523 40 HOH HOH B . D 3 HOH 24 524 33 HOH HOH B . D 3 HOH 25 525 42 HOH HOH B . D 3 HOH 26 526 48 HOH HOH B . D 3 HOH 27 527 49 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 95 B MSE 134 ? MET 'modified residue' 2 A MSE 125 B MSE 164 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 310 ? 1 MORE -1 ? 1 'SSA (A^2)' 13260 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 516 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 35.4158 34.5993 10.3240 0.5955 0.5603 0.5406 -0.0252 0.0262 -0.0078 1.4172 3.3539 1.9588 -0.2154 0.2384 1.5380 0.0156 0.0959 -0.1359 -0.1969 0.2138 -0.2613 0.1122 -0.2138 -0.0049 'X-RAY DIFFRACTION' 2 ? refined 39.3213 7.1530 4.6438 0.4675 0.5407 0.4519 -0.0086 -0.0014 0.0240 2.8843 3.8117 1.5051 0.3555 0.1165 0.8220 0.1115 0.1461 -0.2770 -0.1900 -0.3203 -0.4277 0.2744 0.1743 0.0006 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 40 B 222 '(chain B and resid 40:222)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 223 B 320 '(chain B and resid 223:320)' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? . 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU B 53 ? ? 110.25 -34.48 2 1 GLU B 100 ? ? -138.69 -62.06 3 1 ASP B 102 ? ? -49.65 153.93 4 1 GLU B 126 ? ? -139.96 -59.54 5 1 ASP B 166 ? ? -102.87 -158.10 6 1 GLN B 170 ? ? 27.92 -121.56 7 1 SER B 191 ? ? 51.69 77.80 8 1 LEU B 242 ? ? -94.48 -137.45 9 1 ASN B 280 ? ? 71.98 -59.84 10 1 ASN B 287 ? ? -144.05 10.99 11 1 ASN B 299 ? ? 64.20 -20.00 12 1 PRO B 301 ? ? -74.66 43.69 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 169 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 170 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 133.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 275 ? A SER 236 2 1 Y 1 B GLN 276 ? A GLN 237 3 1 Y 1 B TYR 277 ? A TYR 238 4 1 Y 1 B ALA 278 ? A ALA 239 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swedish Research Council' Sweden 2016-05009 1 'Japan Society for the Promotion of Science' Japan 16K11466 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #