HEADER TRANSFERASE 16-MAR-17 5NG2 TITLE STRUCTURE OF RIP2K(D146N) WITH BOUND STAUROSPORINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- COMPND 5 ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- COMPND 6 INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, COMPND 7 TYROSINE-PROTEIN KINASE RIPK2; COMPND 8 EC: 2.7.11.1,2.7.10.2; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RIP2K, KINASE, INACTIVE STATE, STAUROSPORINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PELLEGRINI,S.CUSACK REVDAT 4 17-JAN-24 5NG2 1 REMARK REVDAT 3 16-OCT-19 5NG2 1 REMARK REVDAT 2 06-DEC-17 5NG2 1 JRNL REVDAT 1 07-JUN-17 5NG2 0 JRNL AUTH E.PELLEGRINI,L.SIGNOR,S.SINGH,E.BOERI ERBA,S.CUSACK JRNL TITL STRUCTURES OF THE INACTIVE AND ACTIVE STATES OF RIP2 KINASE JRNL TITL 2 INFORM ON THE MECHANISM OF ACTIVATION. JRNL REF PLOS ONE V. 12 77161 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28545134 JRNL DOI 10.1371/JOURNAL.PONE.0177161 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.13000 REMARK 3 B22 (A**2) : 2.13000 REMARK 3 B33 (A**2) : -4.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.623 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4766 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6513 ; 1.732 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;36.922 ;23.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 793 ;16.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ; 9.936 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3587 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2216 ; 2.213 ; 5.534 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 3.981 ; 8.286 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2550 ; 2.109 ; 5.715 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7245 ; 7.322 ;70.348 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 298 B 5 298 17794 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5NG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NG0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: .1 M MES PH6.5, 2M NACL, 0.1 MM REMARK 280 NA(H2PO4), 0.1 MM OF K(H2PO4), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.13300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.04150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.04150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.56650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.04150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.04150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 151.69950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.04150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.04150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.56650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.04150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.04150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 151.69950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.13300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 MET B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 GLY B 187 REMARK 465 GLY B 201 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 146 OD2 ASP B 164 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 145 19.44 57.71 REMARK 500 ASN A 146 36.85 -152.07 REMARK 500 ASP A 164 80.49 61.49 REMARK 500 HIS B 145 18.77 58.40 REMARK 500 ASN B 146 36.69 -152.17 REMARK 500 ASP B 164 80.21 61.45 REMARK 500 SER B 204 -165.12 -121.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 404 DBREF 5NG2 A 1 300 UNP O43353 RIPK2_HUMAN 1 300 DBREF 5NG2 B 1 300 UNP O43353 RIPK2_HUMAN 1 300 SEQADV 5NG2 GLY A -3 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ALA A -2 UNP O43353 EXPRESSION TAG SEQADV 5NG2 MET A -1 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ALA A 0 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ASN A 146 UNP O43353 ASP 146 ENGINEERED MUTATION SEQADV 5NG2 GLY B -3 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ALA B -2 UNP O43353 EXPRESSION TAG SEQADV 5NG2 MET B -1 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ALA B 0 UNP O43353 EXPRESSION TAG SEQADV 5NG2 ASN B 146 UNP O43353 ASP 146 ENGINEERED MUTATION SEQRES 1 A 304 GLY ALA MET ALA MET ASN GLY GLU ALA ILE CYS SER ALA SEQRES 2 A 304 LEU PRO THR ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG SEQRES 3 A 304 TYR LEU SER ARG GLY ALA SER GLY THR VAL SER SER ALA SEQRES 4 A 304 ARG HIS ALA ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS SEQRES 5 A 304 LEU HIS ILE HIS THR PRO LEU LEU ASP SER GLU ARG LYS SEQRES 6 A 304 ASP VAL LEU ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG SEQRES 7 A 304 PHE SER TYR ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU SEQRES 8 A 304 PRO GLU PHE LEU GLY ILE VAL THR GLU TYR MET PRO ASN SEQRES 9 A 304 GLY SER LEU ASN GLU LEU LEU HIS ARG LYS THR GLU TYR SEQRES 10 A 304 PRO ASP VAL ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS SEQRES 11 A 304 GLU ILE ALA LEU GLY VAL ASN TYR LEU HIS ASN MET THR SEQRES 12 A 304 PRO PRO LEU LEU HIS HIS ASN LEU LYS THR GLN ASN ILE SEQRES 13 A 304 LEU LEU ASP ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE SEQRES 14 A 304 GLY LEU SER LYS TRP ARG MET MET SER LEU SER GLN SER SEQRES 15 A 304 ARG SER SER LYS SER ALA PRO GLU GLY GLY THR ILE ILE SEQRES 16 A 304 TYR MET PRO PRO GLU ASN TYR GLU PRO GLY GLN LYS SER SEQRES 17 A 304 ARG ALA SER ILE LYS HIS ASP ILE TYR SER TYR ALA VAL SEQRES 18 A 304 ILE THR TRP GLU VAL LEU SER ARG LYS GLN PRO PHE GLU SEQRES 19 A 304 ASP VAL THR ASN PRO LEU GLN ILE MET TYR SER VAL SER SEQRES 20 A 304 GLN GLY HIS ARG PRO VAL ILE ASN GLU GLU SER LEU PRO SEQRES 21 A 304 TYR ASP ILE PRO HIS ARG ALA ARG MET ILE SER LEU ILE SEQRES 22 A 304 GLU SER GLY TRP ALA GLN ASN PRO ASP GLU ARG PRO SER SEQRES 23 A 304 PHE LEU LYS CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG SEQRES 24 A 304 THR PHE GLU GLU ILE SEQRES 1 B 304 GLY ALA MET ALA MET ASN GLY GLU ALA ILE CYS SER ALA SEQRES 2 B 304 LEU PRO THR ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG SEQRES 3 B 304 TYR LEU SER ARG GLY ALA SER GLY THR VAL SER SER ALA SEQRES 4 B 304 ARG HIS ALA ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS SEQRES 5 B 304 LEU HIS ILE HIS THR PRO LEU LEU ASP SER GLU ARG LYS SEQRES 6 B 304 ASP VAL LEU ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG SEQRES 7 B 304 PHE SER TYR ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU SEQRES 8 B 304 PRO GLU PHE LEU GLY ILE VAL THR GLU TYR MET PRO ASN SEQRES 9 B 304 GLY SER LEU ASN GLU LEU LEU HIS ARG LYS THR GLU TYR SEQRES 10 B 304 PRO ASP VAL ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS SEQRES 11 B 304 GLU ILE ALA LEU GLY VAL ASN TYR LEU HIS ASN MET THR SEQRES 12 B 304 PRO PRO LEU LEU HIS HIS ASN LEU LYS THR GLN ASN ILE SEQRES 13 B 304 LEU LEU ASP ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE SEQRES 14 B 304 GLY LEU SER LYS TRP ARG MET MET SER LEU SER GLN SER SEQRES 15 B 304 ARG SER SER LYS SER ALA PRO GLU GLY GLY THR ILE ILE SEQRES 16 B 304 TYR MET PRO PRO GLU ASN TYR GLU PRO GLY GLN LYS SER SEQRES 17 B 304 ARG ALA SER ILE LYS HIS ASP ILE TYR SER TYR ALA VAL SEQRES 18 B 304 ILE THR TRP GLU VAL LEU SER ARG LYS GLN PRO PHE GLU SEQRES 19 B 304 ASP VAL THR ASN PRO LEU GLN ILE MET TYR SER VAL SER SEQRES 20 B 304 GLN GLY HIS ARG PRO VAL ILE ASN GLU GLU SER LEU PRO SEQRES 21 B 304 TYR ASP ILE PRO HIS ARG ALA ARG MET ILE SER LEU ILE SEQRES 22 B 304 GLU SER GLY TRP ALA GLN ASN PRO ASP GLU ARG PRO SER SEQRES 23 B 304 PHE LEU LYS CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG SEQRES 24 B 304 THR PHE GLU GLU ILE HET STU A 401 35 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET STU B 401 35 HET PO4 B 402 5 HET PO4 B 403 5 HET PO4 B 404 5 HETNAM STU STAUROSPORINE HETNAM PO4 PHOSPHATE ION FORMUL 3 STU 2(C28 H26 N4 O3) FORMUL 4 PO4 6(O4 P 3-) FORMUL 11 HOH *51(H2 O) HELIX 1 AA1 PRO A 14 HIS A 16 5 3 HELIX 2 AA2 LEU A 56 ALA A 73 1 18 HELIX 3 AA3 SER A 102 ARG A 109 1 8 HELIX 4 AA4 ALA A 117 ASN A 137 1 21 HELIX 5 AA5 PRO A 194 TYR A 198 5 5 HELIX 6 AA6 LYS A 209 ARG A 225 1 17 HELIX 7 AA7 ASN A 234 GLN A 244 1 11 HELIX 8 AA8 HIS A 261 TRP A 273 1 13 HELIX 9 AA9 ASN A 276 ARG A 280 5 5 HELIX 10 AB1 SER A 282 ARG A 295 1 14 HELIX 11 AB2 PRO B 14 HIS B 16 5 3 HELIX 12 AB3 LEU B 56 ALA B 73 1 18 HELIX 13 AB4 SER B 102 ARG B 109 1 8 HELIX 14 AB5 ALA B 117 ASN B 137 1 21 HELIX 15 AB6 PRO B 194 TYR B 198 5 5 HELIX 16 AB7 SER B 204 ILE B 208 5 5 HELIX 17 AB8 LYS B 209 ARG B 225 1 17 HELIX 18 AB9 ASN B 234 GLN B 244 1 11 HELIX 19 AC1 HIS B 261 TRP B 273 1 13 HELIX 20 AC2 ASN B 276 ARG B 280 5 5 HELIX 21 AC3 SER B 282 ARG B 295 1 14 SHEET 1 AA1 2 CYS A 7 ALA A 9 0 SHEET 2 AA1 2 CYS B 7 ALA B 9 -1 O SER B 8 N SER A 8 SHEET 1 AA2 5 LEU A 18 ARG A 26 0 SHEET 2 AA2 5 THR A 31 HIS A 37 -1 O VAL A 32 N LEU A 24 SHEET 3 AA2 5 GLN A 43 HIS A 48 -1 O VAL A 46 N SER A 33 SHEET 4 AA2 5 LEU A 91 GLU A 96 -1 O THR A 95 N ALA A 45 SHEET 5 AA2 5 ILE A 81 ASN A 86 -1 N CYS A 85 O GLY A 92 SHEET 1 AA3 2 LEU A 142 LEU A 143 0 SHEET 2 AA3 2 LYS A 169 TRP A 170 -1 O LYS A 169 N LEU A 143 SHEET 1 AA4 2 ILE A 152 LEU A 154 0 SHEET 2 AA4 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153 SHEET 1 AA5 5 LEU B 18 ARG B 26 0 SHEET 2 AA5 5 THR B 31 HIS B 37 -1 O VAL B 32 N LEU B 24 SHEET 3 AA5 5 GLN B 43 HIS B 48 -1 O VAL B 46 N SER B 33 SHEET 4 AA5 5 LEU B 91 GLU B 96 -1 O THR B 95 N ALA B 45 SHEET 5 AA5 5 ILE B 81 ASN B 86 -1 N CYS B 85 O GLY B 92 SHEET 1 AA6 2 LEU B 142 LEU B 143 0 SHEET 2 AA6 2 LYS B 169 TRP B 170 -1 O LYS B 169 N LEU B 143 SHEET 1 AA7 2 ILE B 152 LEU B 154 0 SHEET 2 AA7 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153 CISPEP 1 THR A 139 PRO A 140 0 -2.33 CISPEP 2 THR B 139 PRO B 140 0 -2.05 SITE 1 AC1 10 SER A 25 VAL A 32 ALA A 45 THR A 95 SITE 2 AC1 10 GLU A 96 TYR A 97 MET A 98 SER A 102 SITE 3 AC1 10 GLN A 150 LEU A 153 SITE 1 AC2 5 PRO A 14 GLU A 87 SER A 267 GLU A 270 SITE 2 AC2 5 SER A 271 SITE 1 AC3 4 TYR A 113 ASP A 115 LEU A 120 PHE A 158 SITE 1 AC4 2 VAL A 116 TRP A 118 SITE 1 AC5 11 SER B 25 VAL B 32 ALA B 45 LYS B 47 SITE 2 AC5 11 THR B 95 GLU B 96 TYR B 97 MET B 98 SITE 3 AC5 11 GLN B 150 ASN B 151 LEU B 153 SITE 1 AC6 5 PRO B 14 GLU B 87 SER B 267 GLU B 270 SITE 2 AC6 5 SER B 271 SITE 1 AC7 3 ASP A 155 ASP B 155 LYS B 161 SITE 1 AC8 6 THR B 12 ILE B 13 PRO B 14 HIS B 37 SITE 2 AC8 6 ASP B 39 TRP B 40 CRYST1 96.083 96.083 202.266 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004944 0.00000