HEADER HYDROLASE 17-MAR-17 5NGG TITLE CRYSTAL STRUCTURE OF THE SUBCLASS B3 METALLO-BETA-LACTAMASE BJP-1 IN TITLE 2 COMPLEX WITH ACETATE ANION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLR6230 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS USDA 110; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 GENE: BLR6230; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-BJP KEYWDS HYDROLASE, METALLO-BETA-LACTAMASE, B3 ACETATE, BJP-1 EXPDTA X-RAY DIFFRACTION AUTHOR C.POZZI,F.DI PISA,M.BENVENUTI,S.MANGANI REVDAT 3 17-JAN-24 5NGG 1 LINK REVDAT 2 31-JAN-18 5NGG 1 AUTHOR REVDAT 1 27-SEP-17 5NGG 0 JRNL AUTH F.DI PISA,C.POZZI,M.BENVENUTI,J.-D.DOCQUIER,F.DE LUCA, JRNL AUTH 2 S.MANGANI JRNL TITL BORIC ACID AND ACETATE ANION BINDING TO SUBCLASS B3 JRNL TITL 2 METALLO-BETA-LACTAMASE BJP-1 PROVIDES CLUES FOR MECHANISM OF JRNL TITL 3 ACTION AND INHIBITOR DESIGN JRNL REF INORG.CHIM.ACTA. 2017 JRNL REFN ISSN 0020-1693 JRNL DOI 10.1016/J.ICA.2017.07.030 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 141256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 7703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 525 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : -0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4458 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4221 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6108 ; 1.458 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9760 ; 2.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.716 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;33.073 ;24.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;11.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 696 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5190 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 947 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2310 ; 1.487 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2307 ; 1.484 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2915 ; 1.718 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2916 ; 1.719 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2148 ; 1.620 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2149 ; 1.620 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3174 ; 2.154 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5049 ; 3.060 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4948 ; 2.714 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3757 ; 3.428 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 389 ;24.653 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3918 ;11.876 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 34.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LVZ REMARK 200 REMARK 200 REMARK: CLUSTERS OF PARALLELEPIPED-SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BJP-1 (10 MG ML-1 IN 0.1 M TRIS-HCL PH REMARK 280 8.5 AND 5 MM ZINC(II) CHLORIDE) MIXED WITH PRECIPITANT (0.2 M REMARK 280 LITHIUM SULFATE, 30-35 % PEG4000, 0.5 M SODIUM ACETATE PH 8.5), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 CYS A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 ALA A 20 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 CYS B 9 REMARK 465 ALA B 10 REMARK 465 LEU B 11 REMARK 465 THR B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 GLN B 19 REMARK 465 ALA B 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 21 CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 MET A 31 CG SD CE REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 86 NZ REMARK 470 LYS A 90 NZ REMARK 470 LYS A 95 CE NZ REMARK 470 LYS A 115 NZ REMARK 470 LYS A 141 NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 192 CD CE NZ REMARK 470 GLN A 213 CD OE1 NE2 REMARK 470 LYS A 234 CE NZ REMARK 470 GLU A 254 CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 LYS A 265 NZ REMARK 470 LYS A 293 CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 LYS B 24 CE NZ REMARK 470 MET B 31 CG SD CE REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 GLU B 39 CD OE1 OE2 REMARK 470 LYS B 86 NZ REMARK 470 LYS B 115 NZ REMARK 470 LYS B 141 CD CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LYS B 157 NZ REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 LYS B 234 CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 LYS B 265 CE NZ REMARK 470 LYS B 282 CE NZ REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 LYS B 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 181 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -91.86 -126.69 REMARK 500 ASP A 45 -120.31 50.34 REMARK 500 ASP A 70 173.00 69.47 REMARK 500 THR A 71 -157.40 -132.11 REMARK 500 ALA A 72 -154.84 -127.94 REMARK 500 ASP A 139 51.69 -149.23 REMARK 500 SER A 202 136.56 115.23 REMARK 500 ALA A 206 -124.54 51.79 REMARK 500 LYS A 265 83.50 -150.59 REMARK 500 LYS B 32 -77.57 -110.29 REMARK 500 ASP B 45 -119.96 53.83 REMARK 500 ASP B 70 173.75 66.71 REMARK 500 ASP B 70 173.75 69.55 REMARK 500 THR B 71 -159.99 -133.38 REMARK 500 ALA B 72 -156.00 -127.50 REMARK 500 ASP B 139 50.62 -147.52 REMARK 500 SER B 202 136.71 114.75 REMARK 500 ALA B 206 -125.33 52.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 714 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 715 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 HIS A 103 ND1 99.5 REMARK 620 3 HIS A 177 NE2 96.3 99.6 REMARK 620 4 HOH A 488 O 114.7 114.9 127.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD2 REMARK 620 2 HIS A 106 NE2 91.9 REMARK 620 3 HIS A 242 NE2 89.7 98.9 REMARK 620 4 ACT A 304 OXT 163.7 104.4 87.9 REMARK 620 5 HOH A 488 O 90.3 108.7 152.3 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE2 REMARK 620 2 HIS A 172 ND1 115.0 REMARK 620 3 LYS A 229 NZ 112.0 124.1 REMARK 620 4 LYS A 294 O 104.5 107.1 31.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 NE2 REMARK 620 2 HIS B 103 ND1 100.2 REMARK 620 3 HIS B 177 NE2 96.5 99.2 REMARK 620 4 HOH B 507 O 114.0 115.8 126.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 105 OD2 REMARK 620 2 HIS B 106 NE2 90.3 REMARK 620 3 HIS B 242 NE2 88.4 98.5 REMARK 620 4 ACT B 304 O 164.5 105.2 89.9 REMARK 620 5 HOH B 507 O 90.3 109.4 152.1 84.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 158 OE2 REMARK 620 2 HIS B 172 ND1 116.2 REMARK 620 3 LYS B 229 NZ 109.6 124.0 REMARK 620 4 LYS B 294 O 101.8 107.1 30.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 304 DBREF 5NGG A 1 294 UNP Q89GW5 Q89GW5_BRADU 1 294 DBREF 5NGG B 1 294 UNP Q89GW5 Q89GW5_BRADU 1 294 SEQRES 1 A 294 MET ARG ARG LEU THR ALA ALA LEU CYS ALA LEU THR LEU SEQRES 2 A 294 LEU SER THR GLY ALA GLN ALA GLN THR ILE LYS ASP PHE SEQRES 3 A 294 LEU ALA VAL ALA MET LYS LYS TRP THR ALA PRO PHE GLU SEQRES 4 A 294 PRO PHE GLN LEU ILE ASP ASN ILE TYR TYR VAL GLY THR SEQRES 5 A 294 ASP GLY ILE ALA VAL TYR VAL ILE LYS THR SER GLN GLY SEQRES 6 A 294 LEU ILE LEU MET ASP THR ALA MET PRO GLN SER THR GLY SEQRES 7 A 294 MET ILE LYS ASP ASN ILE ALA LYS LEU GLY PHE LYS VAL SEQRES 8 A 294 ALA ASP ILE LYS LEU ILE LEU ASN THR HIS ALA HIS LEU SEQRES 9 A 294 ASP HIS THR GLY GLY PHE ALA GLU ILE LYS LYS GLU THR SEQRES 10 A 294 GLY ALA GLN LEU VAL ALA GLY GLU ARG ASP LYS PRO LEU SEQRES 11 A 294 LEU GLU GLY GLY TYR TYR PRO GLY ASP GLU LYS ASN GLU SEQRES 12 A 294 ASP LEU ALA PHE PRO ALA VAL LYS VAL ASP ARG ALA VAL SEQRES 13 A 294 LYS GLU GLY ASP ARG VAL THR LEU GLY ASP THR THR LEU SEQRES 14 A 294 THR ALA HIS ALA THR PRO GLY HIS SER PRO GLY CYS THR SEQRES 15 A 294 SER TRP GLU MET THR VAL LYS ASP GLY LYS GLU ASP ARG SEQRES 16 A 294 GLU VAL LEU PHE PHE CYS SER GLY THR VAL ALA LEU ASN SEQRES 17 A 294 ARG LEU VAL GLY GLN PRO THR TYR ALA GLY ILE VAL ASP SEQRES 18 A 294 ASP TYR ARG ALA THR PHE ALA LYS ALA LYS ALA MET LYS SEQRES 19 A 294 ILE ASP VAL LEU LEU GLY PRO HIS PRO GLU VAL TYR GLY SEQRES 20 A 294 MET GLN ALA LYS ARG ALA GLU MET LYS ASP GLY ALA PRO SEQRES 21 A 294 ASN PRO PHE ILE LYS PRO GLY GLU LEU VAL THR TYR ALA SEQRES 22 A 294 THR SER LEU SER GLU ASP PHE ASP LYS GLN LEU ALA LYS SEQRES 23 A 294 GLN THR ALA ALA LEU GLU LYS LYS SEQRES 1 B 294 MET ARG ARG LEU THR ALA ALA LEU CYS ALA LEU THR LEU SEQRES 2 B 294 LEU SER THR GLY ALA GLN ALA GLN THR ILE LYS ASP PHE SEQRES 3 B 294 LEU ALA VAL ALA MET LYS LYS TRP THR ALA PRO PHE GLU SEQRES 4 B 294 PRO PHE GLN LEU ILE ASP ASN ILE TYR TYR VAL GLY THR SEQRES 5 B 294 ASP GLY ILE ALA VAL TYR VAL ILE LYS THR SER GLN GLY SEQRES 6 B 294 LEU ILE LEU MET ASP THR ALA MET PRO GLN SER THR GLY SEQRES 7 B 294 MET ILE LYS ASP ASN ILE ALA LYS LEU GLY PHE LYS VAL SEQRES 8 B 294 ALA ASP ILE LYS LEU ILE LEU ASN THR HIS ALA HIS LEU SEQRES 9 B 294 ASP HIS THR GLY GLY PHE ALA GLU ILE LYS LYS GLU THR SEQRES 10 B 294 GLY ALA GLN LEU VAL ALA GLY GLU ARG ASP LYS PRO LEU SEQRES 11 B 294 LEU GLU GLY GLY TYR TYR PRO GLY ASP GLU LYS ASN GLU SEQRES 12 B 294 ASP LEU ALA PHE PRO ALA VAL LYS VAL ASP ARG ALA VAL SEQRES 13 B 294 LYS GLU GLY ASP ARG VAL THR LEU GLY ASP THR THR LEU SEQRES 14 B 294 THR ALA HIS ALA THR PRO GLY HIS SER PRO GLY CYS THR SEQRES 15 B 294 SER TRP GLU MET THR VAL LYS ASP GLY LYS GLU ASP ARG SEQRES 16 B 294 GLU VAL LEU PHE PHE CYS SER GLY THR VAL ALA LEU ASN SEQRES 17 B 294 ARG LEU VAL GLY GLN PRO THR TYR ALA GLY ILE VAL ASP SEQRES 18 B 294 ASP TYR ARG ALA THR PHE ALA LYS ALA LYS ALA MET LYS SEQRES 19 B 294 ILE ASP VAL LEU LEU GLY PRO HIS PRO GLU VAL TYR GLY SEQRES 20 B 294 MET GLN ALA LYS ARG ALA GLU MET LYS ASP GLY ALA PRO SEQRES 21 B 294 ASN PRO PHE ILE LYS PRO GLY GLU LEU VAL THR TYR ALA SEQRES 22 B 294 THR SER LEU SER GLU ASP PHE ASP LYS GLN LEU ALA LYS SEQRES 23 B 294 GLN THR ALA ALA LEU GLU LYS LYS HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ACT A 304 4 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ACT B 304 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *627(H2 O) HELIX 1 AA1 THR A 22 MET A 31 1 10 HELIX 2 AA2 LYS A 32 ALA A 36 5 5 HELIX 3 AA3 MET A 73 GLN A 75 5 3 HELIX 4 AA4 SER A 76 LEU A 87 1 12 HELIX 5 AA5 LYS A 90 ALA A 92 5 3 HELIX 6 AA6 HIS A 103 GLY A 108 1 6 HELIX 7 AA7 GLY A 109 GLY A 118 1 10 HELIX 8 AA8 ASP A 127 GLY A 134 1 8 HELIX 9 AA9 ASN A 142 ALA A 146 5 5 HELIX 10 AB1 GLY A 218 MET A 233 1 16 HELIX 11 AB2 HIS A 242 TYR A 246 5 5 HELIX 12 AB3 GLY A 247 GLU A 254 1 8 HELIX 13 AB4 GLY A 267 GLU A 292 1 26 HELIX 14 AB5 THR B 22 LYS B 32 1 11 HELIX 15 AB6 LYS B 33 ALA B 36 5 4 HELIX 16 AB7 MET B 73 GLN B 75 5 3 HELIX 17 AB8 SER B 76 LEU B 87 1 12 HELIX 18 AB9 LYS B 90 ALA B 92 5 3 HELIX 19 AC1 HIS B 103 GLY B 108 1 6 HELIX 20 AC2 GLY B 109 GLY B 118 1 10 HELIX 21 AC3 ASP B 127 GLY B 134 1 8 HELIX 22 AC4 ASN B 142 ALA B 146 5 5 HELIX 23 AC5 GLY B 218 MET B 233 1 16 HELIX 24 AC6 HIS B 242 TYR B 246 5 5 HELIX 25 AC7 GLY B 247 GLU B 254 1 8 HELIX 26 AC8 GLY B 267 GLU B 292 1 26 SHEET 1 AA1 7 PHE A 41 ILE A 44 0 SHEET 2 AA1 7 ILE A 47 TYR A 49 -1 O TYR A 49 N PHE A 41 SHEET 3 AA1 7 TYR A 58 THR A 62 -1 O VAL A 59 N TYR A 48 SHEET 4 AA1 7 GLY A 65 MET A 69 -1 O MET A 69 N TYR A 58 SHEET 5 AA1 7 ILE A 94 LEU A 98 1 O LEU A 98 N LEU A 68 SHEET 6 AA1 7 GLN A 120 GLY A 124 1 O VAL A 122 N ILE A 97 SHEET 7 AA1 7 ARG A 154 VAL A 156 1 O VAL A 156 N ALA A 123 SHEET 1 AA2 5 ARG A 161 LEU A 164 0 SHEET 2 AA2 5 THR A 167 ALA A 173 -1 O LEU A 169 N VAL A 162 SHEET 3 AA2 5 THR A 182 ASP A 190 -1 O GLU A 185 N THR A 170 SHEET 4 AA2 5 GLU A 193 PHE A 199 -1 O VAL A 197 N MET A 186 SHEET 5 AA2 5 VAL A 237 LEU A 239 1 O LEU A 239 N LEU A 198 SHEET 1 AA3 7 PHE B 41 ILE B 44 0 SHEET 2 AA3 7 ILE B 47 TYR B 49 -1 O TYR B 49 N PHE B 41 SHEET 3 AA3 7 TYR B 58 THR B 62 -1 O VAL B 59 N TYR B 48 SHEET 4 AA3 7 GLY B 65 MET B 69 -1 O MET B 69 N TYR B 58 SHEET 5 AA3 7 ILE B 94 LEU B 98 1 O LEU B 98 N LEU B 68 SHEET 6 AA3 7 GLN B 120 GLY B 124 1 O VAL B 122 N ILE B 97 SHEET 7 AA3 7 ARG B 154 VAL B 156 1 O VAL B 156 N ALA B 123 SHEET 1 AA4 5 ARG B 161 LEU B 164 0 SHEET 2 AA4 5 THR B 167 ALA B 173 -1 O LEU B 169 N VAL B 162 SHEET 3 AA4 5 THR B 182 ASP B 190 -1 O GLU B 185 N THR B 170 SHEET 4 AA4 5 GLU B 193 PHE B 199 -1 O VAL B 197 N MET B 186 SHEET 5 AA4 5 VAL B 237 LEU B 239 1 O LEU B 239 N LEU B 198 SSBOND 1 CYS A 181 CYS A 201 1555 1555 2.12 SSBOND 2 CYS B 181 CYS B 201 1555 1555 2.11 LINK NE2 HIS A 101 ZN ZN A 302 1555 1555 2.07 LINK ND1 HIS A 103 ZN ZN A 302 1555 1555 2.07 LINK OD2 ASP A 105 ZN ZN A 301 1555 1555 2.13 LINK NE2 HIS A 106 ZN ZN A 301 1555 1555 2.06 LINK OE2 GLU A 158 ZN ZN A 303 1555 1555 1.96 LINK ND1 HIS A 172 ZN ZN A 303 1555 1555 2.04 LINK NE2 HIS A 177 ZN ZN A 302 1555 1555 2.07 LINK NZ LYS A 229 ZN ZN A 303 1555 1555 2.08 LINK NE2 HIS A 242 ZN ZN A 301 1555 1555 2.11 LINK O LYS A 294 ZN ZN A 303 1555 1565 2.00 LINK ZN ZN A 301 OXT ACT A 304 1555 1555 2.18 LINK ZN ZN A 301 O HOH A 488 1555 1555 2.06 LINK ZN ZN A 302 O HOH A 488 1555 1555 1.85 LINK NE2 HIS B 101 ZN ZN B 302 1555 1555 2.06 LINK ND1 HIS B 103 ZN ZN B 302 1555 1555 2.09 LINK OD2 ASP B 105 ZN ZN B 301 1555 1555 2.12 LINK NE2 HIS B 106 ZN ZN B 301 1555 1555 2.06 LINK OE2 GLU B 158 ZN ZN B 303 1555 1645 1.96 LINK ND1 HIS B 172 ZN ZN B 303 1555 1645 2.04 LINK NE2 HIS B 177 ZN ZN B 302 1555 1555 2.05 LINK NZ LYS B 229 ZN ZN B 303 1555 1645 2.04 LINK NE2 HIS B 242 ZN ZN B 301 1555 1555 2.13 LINK O LYS B 294 ZN ZN B 303 1555 1555 1.97 LINK ZN ZN B 301 O ACT B 304 1555 1555 2.18 LINK ZN ZN B 301 O HOH B 507 1555 1555 2.04 LINK ZN ZN B 302 O HOH B 507 1555 1555 1.87 SITE 1 AC1 6 ASP A 105 HIS A 106 HIS A 242 ZN A 302 SITE 2 AC1 6 ACT A 304 HOH A 488 SITE 1 AC2 6 HIS A 101 HIS A 103 HIS A 177 ZN A 301 SITE 2 AC2 6 ACT A 304 HOH A 488 SITE 1 AC3 4 GLU A 158 HIS A 172 LYS A 229 LYS A 294 SITE 1 AC4 10 HIS A 101 HIS A 106 HIS A 177 SER A 202 SITE 2 AC4 10 THR A 204 HIS A 242 ZN A 301 ZN A 302 SITE 3 AC4 10 HOH A 488 HOH A 494 SITE 1 AC5 6 ASP B 105 HIS B 106 HIS B 242 ZN B 302 SITE 2 AC5 6 ACT B 304 HOH B 507 SITE 1 AC6 6 HIS B 101 HIS B 103 HIS B 177 ZN B 301 SITE 2 AC6 6 ACT B 304 HOH B 507 SITE 1 AC7 4 GLU B 158 HIS B 172 LYS B 229 LYS B 294 SITE 1 AC8 11 HIS B 101 HIS B 106 HIS B 177 SER B 202 SITE 2 AC8 11 THR B 204 HIS B 242 ZN B 301 ZN B 302 SITE 3 AC8 11 HOH B 454 HOH B 507 HOH B 662 CRYST1 42.310 44.640 75.910 78.88 89.41 61.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023635 -0.012572 0.002492 0.00000 SCALE2 0.000000 0.025374 -0.005531 0.00000 SCALE3 0.000000 0.000000 0.013484 0.00000