HEADER PROTEIN BINDING 17-MAR-17 5NGH TITLE STRUCTURE OF ODORANT BINDING PROTEIN 3 FROM GIANT PANDA (AILUROPODA TITLE 2 MELANOLEUCA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ODORANT BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AILUROPODA MELANOLEUCA; SOURCE 3 ORGANISM_COMMON: GIANT PANDA; SOURCE 4 ORGANISM_TAXID: 9646; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ODORANT BINDING PROTEIN GIANT PANDA AILUROPODA MELANOLEUCA, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.CAMBILLAU,S.SPINELLI,P.PELOSI REVDAT 5 17-JAN-24 5NGH 1 REMARK REVDAT 4 28-FEB-18 5NGH 1 COMPND AUTHOR REVDAT 3 22-NOV-17 5NGH 1 JRNL REVDAT 2 08-NOV-17 5NGH 1 JRNL REVDAT 1 01-NOV-17 5NGH 0 JRNL AUTH J.ZHU,S.ARENA,S.SPINELLI,D.LIU,G.ZHANG,R.WEI,C.CAMBILLAU, JRNL AUTH 2 A.SCALONI,G.WANG,P.PELOSI JRNL TITL REVERSE CHEMICAL ECOLOGY: OLFACTORY PROTEINS FROM THE GIANT JRNL TITL 2 PANDA AND THEIR INTERACTIONS WITH PUTATIVE PHEROMONES AND JRNL TITL 3 BAMBOO VOLATILES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E9802 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29078359 JRNL DOI 10.1073/PNAS.1711437114 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 389 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2131 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3879 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2025 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE : 0.4047 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 106 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 104.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -27.43210 REMARK 3 B22 (A**2) : -27.43210 REMARK 3 B33 (A**2) : 54.86410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.679 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.601 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.334 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.551 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.329 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.808 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.805 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1307 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1770 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 459 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 41 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 188 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1307 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 172 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1453 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 25.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3 - A|7} REMARK 3 ORIGIN FOR THE GROUP (A): 9.7879 -34.6054 -0.3782 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.0009 REMARK 3 T33: 0.0018 T12: -0.0002 REMARK 3 T13: -0.0008 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0053 L22: -0.0010 REMARK 3 L33: 0.0048 L12: -0.0018 REMARK 3 L13: 0.0008 L23: -0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0002 S13: -0.0002 REMARK 3 S21: 0.0002 S22: 0.0000 S23: 0.0004 REMARK 3 S31: 0.0004 S32: -0.0001 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|8 - A|13} REMARK 3 ORIGIN FOR THE GROUP (A): 16.3228 -26.1755 -2.7427 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: 0.0010 REMARK 3 T33: -0.0034 T12: -0.0012 REMARK 3 T13: -0.0032 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: -0.0102 L22: 0.0102 REMARK 3 L33: 0.0069 L12: 0.0059 REMARK 3 L13: 0.0031 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0001 S13: 0.0011 REMARK 3 S21: 0.0002 S22: 0.0002 S23: 0.0005 REMARK 3 S31: 0.0000 S32: -0.0004 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|14 - A|26} REMARK 3 ORIGIN FOR THE GROUP (A): 22.7371 -32.2594 9.3009 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: -0.0004 REMARK 3 T33: -0.0015 T12: -0.0002 REMARK 3 T13: -0.0033 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0180 L22: -0.0180 REMARK 3 L33: 0.0590 L12: -0.0104 REMARK 3 L13: 0.0303 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0001 S13: 0.0042 REMARK 3 S21: -0.0011 S22: -0.0005 S23: 0.0039 REMARK 3 S31: 0.0004 S32: 0.0007 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|27 - A|32} REMARK 3 ORIGIN FOR THE GROUP (A): 37.9236 -44.6727 0.7468 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0026 REMARK 3 T33: 0.0013 T12: 0.0015 REMARK 3 T13: 0.0001 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 0.0055 REMARK 3 L33: 0.0030 L12: -0.0042 REMARK 3 L13: -0.0016 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0000 S13: -0.0004 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0002 REMARK 3 S31: 0.0002 S32: -0.0002 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|33 - A|39} REMARK 3 ORIGIN FOR THE GROUP (A): 39.4028 -41.6225 8.1855 REMARK 3 T TENSOR REMARK 3 T11: -0.0003 T22: 0.0046 REMARK 3 T33: -0.0010 T12: 0.0017 REMARK 3 T13: -0.0016 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: -0.0058 L22: 0.0058 REMARK 3 L33: 0.0037 L12: 0.0034 REMARK 3 L13: 0.0094 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0008 S13: -0.0010 REMARK 3 S21: 0.0007 S22: -0.0001 S23: -0.0003 REMARK 3 S31: 0.0006 S32: 0.0004 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|40 - A|45} REMARK 3 ORIGIN FOR THE GROUP (A): 30.5388 -33.4820 11.6028 REMARK 3 T TENSOR REMARK 3 T11: -0.0051 T22: 0.0042 REMARK 3 T33: -0.0012 T12: 0.0004 REMARK 3 T13: 0.0030 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: -0.0030 REMARK 3 L33: 0.0000 L12: -0.0017 REMARK 3 L13: -0.0107 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0001 S13: 0.0002 REMARK 3 S21: 0.0000 S22: 0.0004 S23: 0.0000 REMARK 3 S31: 0.0006 S32: 0.0011 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|46 - A|56} REMARK 3 ORIGIN FOR THE GROUP (A): 26.5840 -19.9683 5.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: 0.0003 REMARK 3 T33: -0.0014 T12: -0.0034 REMARK 3 T13: 0.0028 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0097 L22: 0.0114 REMARK 3 L33: 0.0000 L12: 0.0127 REMARK 3 L13: -0.0068 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0005 S13: 0.0001 REMARK 3 S21: -0.0005 S22: -0.0004 S23: -0.0006 REMARK 3 S31: -0.0011 S32: -0.0002 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|57 - A|69} REMARK 3 ORIGIN FOR THE GROUP (A): 37.4766 -32.2044 16.0052 REMARK 3 T TENSOR REMARK 3 T11: -0.0047 T22: 0.0091 REMARK 3 T33: -0.0013 T12: -0.0001 REMARK 3 T13: 0.0023 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0351 L22: -0.0223 REMARK 3 L33: 0.0124 L12: -0.0091 REMARK 3 L13: -0.0331 L23: -0.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0003 S13: -0.0007 REMARK 3 S21: 0.0008 S22: 0.0003 S23: -0.0016 REMARK 3 S31: 0.0010 S32: 0.0006 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|70 - A|80} REMARK 3 ORIGIN FOR THE GROUP (A): 29.7229 -22.3791 -2.6385 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.0008 REMARK 3 T33: -0.0031 T12: -0.0043 REMARK 3 T13: 0.0027 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0156 REMARK 3 L33: 0.0008 L12: 0.0137 REMARK 3 L13: -0.0059 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0004 S13: 0.0007 REMARK 3 S21: -0.0016 S22: -0.0009 S23: 0.0012 REMARK 3 S31: -0.0011 S32: 0.0002 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|81 - A|88} REMARK 3 ORIGIN FOR THE GROUP (A): 35.6355 -27.0957 -0.3602 REMARK 3 T TENSOR REMARK 3 T11: -0.0033 T22: 0.0026 REMARK 3 T33: -0.0004 T12: -0.0023 REMARK 3 T13: 0.0008 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0515 L22: -0.0515 REMARK 3 L33: 0.0000 L12: -0.0297 REMARK 3 L13: -0.0010 L23: -0.0424 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0003 S13: -0.0004 REMARK 3 S21: -0.0005 S22: 0.0003 S23: -0.0020 REMARK 3 S31: -0.0007 S32: 0.0011 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {A|89 - A|93} REMARK 3 ORIGIN FOR THE GROUP (A): 32.9041 -29.2038 -3.6623 REMARK 3 T TENSOR REMARK 3 T11: -0.0014 T22: 0.0045 REMARK 3 T33: -0.0007 T12: -0.0007 REMARK 3 T13: 0.0017 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: -0.0053 L22: 0.0098 REMARK 3 L33: 0.0205 L12: 0.0070 REMARK 3 L13: 0.0035 L23: 0.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0006 S13: 0.0003 REMARK 3 S21: 0.0001 S22: 0.0003 S23: -0.0008 REMARK 3 S31: 0.0004 S32: 0.0007 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: {A|94 - A|99} REMARK 3 ORIGIN FOR THE GROUP (A): 17.2813 -31.9803 0.7856 REMARK 3 T TENSOR REMARK 3 T11: -0.0010 T22: 0.0038 REMARK 3 T33: -0.0023 T12: -0.0001 REMARK 3 T13: -0.0045 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0172 L22: -0.0172 REMARK 3 L33: 0.0061 L12: -0.0100 REMARK 3 L13: 0.0117 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0008 S13: 0.0010 REMARK 3 S21: 0.0008 S22: -0.0004 S23: 0.0007 REMARK 3 S31: -0.0001 S32: -0.0003 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: {A|100 - A|105} REMARK 3 ORIGIN FOR THE GROUP (A): 18.9646 -34.6472 4.3292 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0018 REMARK 3 T33: -0.0048 T12: -0.0017 REMARK 3 T13: -0.0011 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0203 L22: -0.0203 REMARK 3 L33: 0.0125 L12: -0.0117 REMARK 3 L13: 0.0087 L23: 0.0277 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0002 S13: 0.0003 REMARK 3 S21: -0.0002 S22: 0.0001 S23: -0.0010 REMARK 3 S31: 0.0003 S32: -0.0006 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: {A|106 - A|115} REMARK 3 ORIGIN FOR THE GROUP (A): 39.0641 -34.5156 -5.5514 REMARK 3 T TENSOR REMARK 3 T11: -0.0002 T22: 0.0054 REMARK 3 T33: -0.0052 T12: -0.0022 REMARK 3 T13: 0.0003 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0442 L22: -0.0442 REMARK 3 L33: 0.0253 L12: -0.0255 REMARK 3 L13: 0.0149 L23: 0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0001 S13: -0.0003 REMARK 3 S21: -0.0011 S22: -0.0003 S23: -0.0047 REMARK 3 S31: 0.0007 S32: -0.0003 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: {A|116 - A|123} REMARK 3 ORIGIN FOR THE GROUP (A): 28.2822 -37.8219 1.7800 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: -0.0051 REMARK 3 T33: 0.0017 T12: -0.0064 REMARK 3 T13: -0.0014 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: -0.0624 L22: 0.1127 REMARK 3 L33: 0.0000 L12: 0.0796 REMARK 3 L13: -0.0372 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0008 S13: 0.0008 REMARK 3 S21: -0.0002 S22: -0.0011 S23: 0.0004 REMARK 3 S31: 0.0010 S32: 0.0020 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: {A|124 - A|129} REMARK 3 ORIGIN FOR THE GROUP (A): 17.9637 -38.1242 12.5144 REMARK 3 T TENSOR REMARK 3 T11: -0.0030 T22: -0.0030 REMARK 3 T33: 0.0021 T12: -0.0047 REMARK 3 T13: 0.0023 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0128 REMARK 3 L33: 0.0064 L12: 0.0110 REMARK 3 L13: 0.0193 L23: -0.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0004 S13: 0.0001 REMARK 3 S21: -0.0009 S22: -0.0001 S23: 0.0004 REMARK 3 S31: 0.0005 S32: -0.0007 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: {A|130 - A|138} REMARK 3 ORIGIN FOR THE GROUP (A): 18.0299 -45.0359 1.9350 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: -0.0019 REMARK 3 T33: 0.0008 T12: -0.0019 REMARK 3 T13: -0.0004 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: -0.0067 L22: 0.0328 REMARK 3 L33: 0.0114 L12: 0.0264 REMARK 3 L13: 0.0065 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0002 S13: -0.0018 REMARK 3 S21: -0.0002 S22: -0.0007 S23: 0.0002 REMARK 3 S31: 0.0010 S32: -0.0004 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: {A|139 - A|144} REMARK 3 ORIGIN FOR THE GROUP (A): 24.5046 -43.2854 -6.3373 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: -0.0029 REMARK 3 T33: -0.0014 T12: -0.0011 REMARK 3 T13: 0.0001 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: -0.0058 L22: 0.0104 REMARK 3 L33: 0.0000 L12: 0.0074 REMARK 3 L13: -0.0050 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0004 S13: -0.0005 REMARK 3 S21: 0.0004 S22: 0.0003 S23: -0.0004 REMARK 3 S31: 0.0009 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: {A|145 - A|153} REMARK 3 ORIGIN FOR THE GROUP (A): 29.2808 -48.0663 2.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: -0.0009 REMARK 3 T33: -0.0010 T12: -0.0016 REMARK 3 T13: 0.0029 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: -0.0150 L22: 0.0586 REMARK 3 L33: 0.0089 L12: 0.0215 REMARK 3 L13: 0.0017 L23: -0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0001 S13: 0.0002 REMARK 3 S21: 0.0000 S22: 0.0000 S23: -0.0006 REMARK 3 S31: 0.0002 S32: 0.0003 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: {A|154 - A|163} REMARK 3 ORIGIN FOR THE GROUP (A): 29.1311 -39.0741 18.2839 REMARK 3 T TENSOR REMARK 3 T11: -0.0005 T22: 0.0053 REMARK 3 T33: -0.0058 T12: -0.0005 REMARK 3 T13: 0.0003 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: -0.0166 L22: 0.0166 REMARK 3 L33: 0.0113 L12: 0.0096 REMARK 3 L13: -0.0040 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0008 S13: -0.0003 REMARK 3 S21: 0.0003 S22: 0.0001 S23: -0.0004 REMARK 3 S31: 0.0010 S32: 0.0005 S33: 0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3KFF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE AND 0.2M REMARK 280 POTASSIUM NITRATE AT PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.17667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.26500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.08833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.44167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.35333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.17667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.08833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.26500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 95.44167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 GLU A 2 REMARK 465 SER A 165 REMARK 465 GLU A 166 REMARK 465 LYS A 167 REMARK 465 ALA A 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ARG A 8 CZ NH1 NH2 REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 65 CD CE NZ REMARK 470 LYS A 78 CD CE NZ REMARK 470 PHE A 110 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 PHE A 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 142 CD CE NZ REMARK 470 PHE A 151 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 39.83 -150.24 REMARK 500 ARG A 9 -91.32 -101.51 REMARK 500 TYR A 21 -159.26 -118.67 REMARK 500 VAL A 23 -61.21 -90.53 REMARK 500 SER A 52 20.24 89.43 REMARK 500 ASP A 101 -50.02 -138.59 REMARK 500 LYS A 113 -3.97 77.57 REMARK 500 SER A 129 144.12 -34.81 REMARK 500 ALA A 162 -9.37 -56.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 202 DBREF 5NGH A 1 168 UNP G1LK14 G1LK14_AILME 16 183 SEQRES 1 A 168 HIS GLU GLU GLY ASN ASP VAL ARG ARG ASN PHE ASP VAL SEQRES 2 A 168 SER LYS ILE SER GLY TYR TRP TYR SER VAL LEU LEU ALA SEQRES 3 A 168 SER ASP VAL ARG GLU LYS THR GLU GLU ASN SER SER MET SEQRES 4 A 168 ARG VAL PHE VAL ASN HIS ILE GLU VAL LEU SER ASN SER SEQRES 5 A 168 SER LEU LEU PHE ASN MET HIS ILE LYS VAL ASP GLY LYS SEQRES 6 A 168 CYS THR GLU ILE ALA LEU VAL SER ASP LYS THR GLU LYS SEQRES 7 A 168 ASP GLY GLU TYR SER VAL GLU TYR ASP GLY TYR ASN VAL SEQRES 8 A 168 PHE ARG ILE VAL GLU THR ASP TYR THR ASP TYR ILE ILE SEQRES 9 A 168 PHE HIS LEU VAL ASN PHE LYS GLU LYS ASP SER PHE GLN SEQRES 10 A 168 MET MET GLU LEU SER ALA ARG GLU PRO ASP THR SER GLU SEQRES 11 A 168 GLU VAL ARG LYS ARG PHE VAL GLU TYR CYS GLN LYS HIS SEQRES 12 A 168 GLY ILE VAL LYS GLU ASN ILE PHE ASP LEU THR GLU VAL SEQRES 13 A 168 ASP ARG CYS LEU GLN ALA ARG GLY SER GLU LYS ALA HET TRS A 201 8 HET TRS A 202 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 TRS 2(C4 H12 N O3 1+) FORMUL 4 HOH *16(H2 O) HELIX 1 AA1 ASP A 12 ILE A 16 5 5 HELIX 2 AA2 ARG A 30 GLU A 34 5 5 HELIX 3 AA3 SER A 129 HIS A 143 1 15 HELIX 4 AA4 VAL A 146 GLU A 148 5 3 SHEET 1 AA110 GLY A 18 TYR A 19 0 SHEET 2 AA110 PHE A 42 VAL A 48 -1 O ILE A 46 N GLY A 18 SHEET 3 AA110 LEU A 54 VAL A 62 -1 O HIS A 59 N PHE A 42 SHEET 4 AA110 LYS A 65 LYS A 75 -1 O THR A 67 N ILE A 60 SHEET 5 AA110 GLU A 81 GLU A 85 -1 O SER A 83 N ASP A 74 SHEET 6 AA110 TYR A 89 ASP A 98 -1 O PHE A 92 N TYR A 82 SHEET 7 AA110 TYR A 102 LYS A 111 -1 O PHE A 110 N TYR A 89 SHEET 8 AA110 ASP A 114 ALA A 123 -1 O PHE A 116 N ASN A 109 SHEET 9 AA110 LEU A 24 SER A 27 -1 N LEU A 24 O LEU A 121 SHEET 10 AA110 ILE A 150 ASP A 152 -1 O PHE A 151 N LEU A 25 SSBOND 1 CYS A 66 CYS A 159 1555 1555 2.04 CISPEP 1 ARG A 163 GLY A 164 0 -0.76 SITE 1 AC1 2 VAL A 41 GLU A 120 SITE 1 AC2 1 ARG A 8 CRYST1 94.030 94.030 114.530 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010635 0.006140 0.000000 0.00000 SCALE2 0.000000 0.012280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008731 0.00000