HEADER SUGAR BINDING PROTEIN 20-MAR-17 5NGQ TITLE BICYCLIC ANTIMICROBIAL PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN II (PA-IIL); COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN PA-IIL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DLS-PRO-ALD-CYS-TYD-ALA-CYD-LYS-ALA; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FRAGMENT OF BICYCLE; COMPND 12 CHAIN: F, G, H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, PAERUG_E15_LONDON_28_01_14_00983, SOURCE 5 PAERUG_P32_LONDON_17_VIM_2_10_11_00423, PAMH19_1713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS BYCICLE, ANTIMICROBIAL PEPTIDE, PSEUDOMONAS AERUGINOSA, BIOFILM, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.DI BONAVENTURA,X.JIN,R.VISINI,G.MICHAUD,M.ROBADEY,T.KOEHLER,C.VAN AUTHOR 2 DELDEN,A.STOCKER,T.DARBRE,J.-L.REYMOND REVDAT 4 17-JAN-24 5NGQ 1 REMARK REVDAT 3 29-JUL-20 5NGQ 1 REMARK LINK SITE REVDAT 2 29-NOV-17 5NGQ 1 JRNL REMARK REVDAT 1 23-AUG-17 5NGQ 0 JRNL AUTH I.DI BONAVENTURA,X.JIN,R.VISINI,D.PROBST,S.JAVOR,B.H.GAN, JRNL AUTH 2 G.MICHAUD,A.NATALELLO,S.M.DOGLIA,T.KOHLER,C.VAN DELDEN, JRNL AUTH 3 A.STOCKER,T.DARBRE,J.L.REYMOND JRNL TITL CHEMICAL SPACE GUIDED DISCOVERY OF ANTIMICROBIAL BRIDGED JRNL TITL 2 BICYCLIC PEPTIDES AGAINST PSEUDOMONAS AERUGINOSA AND ITS JRNL TITL 3 BIOFILMS. JRNL REF CHEM SCI V. 8 6784 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29147502 JRNL DOI 10.1039/C7SC01314K REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 223602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 11152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2649 - 3.6223 0.99 7940 417 0.1495 0.1678 REMARK 3 2 3.6223 - 2.8752 0.94 7523 399 0.1399 0.1513 REMARK 3 3 2.8752 - 2.5118 0.96 7698 405 0.1447 0.1607 REMARK 3 4 2.5118 - 2.2822 0.95 7637 394 0.1249 0.1472 REMARK 3 5 2.2822 - 2.1186 0.96 7658 407 0.1197 0.1351 REMARK 3 6 2.1186 - 1.9937 0.96 7629 401 0.1101 0.1311 REMARK 3 7 1.9937 - 1.8938 0.95 7613 394 0.1044 0.1272 REMARK 3 8 1.8938 - 1.8114 0.93 7444 385 0.1071 0.1397 REMARK 3 9 1.8114 - 1.7417 0.93 7438 390 0.1078 0.1411 REMARK 3 10 1.7417 - 1.6816 0.93 7490 401 0.1093 0.1569 REMARK 3 11 1.6816 - 1.6290 0.93 7395 393 0.1045 0.1283 REMARK 3 12 1.6290 - 1.5824 0.93 7466 399 0.1018 0.1380 REMARK 3 13 1.5824 - 1.5407 0.93 7480 396 0.1043 0.1467 REMARK 3 14 1.5407 - 1.5032 0.92 7309 388 0.1106 0.1595 REMARK 3 15 1.5032 - 1.4690 0.92 7377 392 0.1208 0.1621 REMARK 3 16 1.4690 - 1.4377 0.91 7383 380 0.1235 0.1551 REMARK 3 17 1.4377 - 1.4090 0.90 7158 372 0.1247 0.1714 REMARK 3 18 1.4090 - 1.3824 0.88 6998 370 0.1370 0.1756 REMARK 3 19 1.3824 - 1.3577 0.87 7023 363 0.1420 0.1842 REMARK 3 20 1.3577 - 1.3347 0.87 6969 369 0.1542 0.1758 REMARK 3 21 1.3347 - 1.3131 0.87 6910 367 0.1479 0.1896 REMARK 3 22 1.3131 - 1.2929 0.85 6878 351 0.1527 0.1809 REMARK 3 23 1.2929 - 1.2739 0.86 6827 361 0.1597 0.1963 REMARK 3 24 1.2739 - 1.2560 0.84 6744 349 0.1676 0.2015 REMARK 3 25 1.2560 - 1.2390 0.84 6720 350 0.1786 0.2201 REMARK 3 26 1.2390 - 1.2229 0.82 6620 346 0.1934 0.2339 REMARK 3 27 1.2229 - 1.2076 0.82 6558 348 0.1970 0.2301 REMARK 3 28 1.2076 - 1.1931 0.81 6444 329 0.2073 0.2411 REMARK 3 29 1.1931 - 1.1792 0.79 6344 337 0.2148 0.2380 REMARK 3 30 1.1792 - 1.1659 0.47 3777 199 0.2454 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3469 REMARK 3 ANGLE : 1.160 4738 REMARK 3 CHIRALITY : 0.119 599 REMARK 3 PLANARITY : 0.007 629 REMARK 3 DIHEDRAL : 13.913 1142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 47.226 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH 4.6 REMARK 280 AND 2.0 M AMMONIUM SULFATE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.35400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.35400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 413 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS F 117 REMARK 465 LYS F 118 REMARK 465 LYS F 119 REMARK 465 LYS G 117 REMARK 465 LYS G 118 REMARK 465 LYS G 119 REMARK 465 LYS H 117 REMARK 465 LYS H 118 REMARK 465 LYS H 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN D 70 CG OD1 ND2 REMARK 470 ALA E 210 CA C O CB REMARK 470 LYS F 116 N CA C O CB CG REMARK 470 LYS G 116 N CA C O CB CG CD REMARK 470 LYS H 116 N CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 11 O HOH A 401 2.04 REMARK 500 O HOH D 482 O HOH D 488 2.12 REMARK 500 O HOH B 503 O HOH C 469 2.13 REMARK 500 O HOH B 419 O HOH D 458 2.15 REMARK 500 O HOH C 436 O HOH D 441 2.16 REMARK 500 O HOH A 423 O HOH A 476 2.16 REMARK 500 O HOH D 492 O HOH D 511 2.17 REMARK 500 NH2 ARG B 13 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 402 2556 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -45.26 -150.44 REMARK 500 ASN B 46 35.79 -143.02 REMARK 500 GLU B 86 -38.12 -151.94 REMARK 500 GLU C 86 -44.94 -148.91 REMARK 500 GLU D 86 -45.28 -149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 514 DISTANCE = 7.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 144.7 REMARK 620 3 ASP A 101 OD2 153.2 46.2 REMARK 620 4 ASN A 103 OD1 86.5 70.8 76.0 REMARK 620 5 ASP A 104 OD1 82.1 70.3 116.4 86.9 REMARK 620 6 GLY C 114 O 79.8 124.0 79.2 87.1 161.2 REMARK 620 7 ZDC G 201 O2 77.8 128.8 113.5 159.9 103.0 78.0 REMARK 620 8 ZDC G 201 O3 132.4 62.7 73.2 133.4 76.7 119.7 66.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.3 REMARK 620 3 ASP A 99 OD1 86.3 81.6 REMARK 620 4 ASP A 101 OD1 79.1 131.0 85.1 REMARK 620 5 ASP A 104 OD1 117.2 130.6 147.0 77.9 REMARK 620 6 ASP A 104 OD2 83.6 79.9 161.5 108.1 51.1 REMARK 620 7 ZDC G 201 O3 149.7 144.2 76.3 74.9 72.1 119.1 REMARK 620 8 ZDC G 201 O4 140.2 87.5 95.1 140.7 81.3 83.0 67.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN C 21 O 79.2 REMARK 620 3 ASP C 101 OD1 124.4 144.2 REMARK 620 4 ASP C 101 OD2 80.2 153.8 45.9 REMARK 620 5 ASN C 103 OD1 85.0 86.7 71.0 75.5 REMARK 620 6 ASP C 104 OD1 159.7 81.6 70.2 116.1 87.6 REMARK 620 7 ZDC E 301 O2 78.2 78.4 128.8 112.8 159.3 104.1 REMARK 620 8 ZDC E 301 O3 121.6 131.1 63.5 74.1 134.5 76.5 65.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 21 O REMARK 620 2 ASP B 101 OD1 144.2 REMARK 620 3 ASP B 101 OD2 152.5 46.4 REMARK 620 4 ASN B 103 OD1 85.6 71.1 76.1 REMARK 620 5 ASP B 104 OD1 82.2 70.3 116.7 87.3 REMARK 620 6 GLY D 114 O 79.3 123.7 79.0 85.3 160.5 REMARK 620 7 ZDC H 201 O2 79.1 128.4 112.8 159.9 103.2 79.2 REMARK 620 8 ZDC H 201 O3 132.7 63.1 73.6 134.2 76.7 120.8 65.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.4 REMARK 620 3 ASP B 99 OD1 86.7 81.4 REMARK 620 4 ASP B 101 OD1 80.2 132.2 85.5 REMARK 620 5 ASP B 104 OD1 116.9 130.0 147.6 77.8 REMARK 620 6 ASP B 104 OD2 83.0 79.4 160.8 108.6 51.0 REMARK 620 7 ZDC H 201 O3 150.4 143.4 76.2 74.7 72.8 119.5 REMARK 620 8 ZDC H 201 O4 139.2 86.6 95.8 140.5 80.7 81.7 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 114 O REMARK 620 2 ASN D 21 O 81.3 REMARK 620 3 ASP D 101 OD1 122.4 144.8 REMARK 620 4 ASP D 101 OD2 78.4 154.4 45.6 REMARK 620 5 ASN D 103 OD1 85.1 87.7 70.8 75.2 REMARK 620 6 ASP D 104 OD1 161.7 81.5 70.5 116.1 87.9 REMARK 620 7 ZDC F 201 O2 78.2 77.0 129.5 113.4 158.8 104.0 REMARK 620 8 ZDC F 201 O3 119.0 130.0 64.6 74.2 135.4 77.4 65.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.3 REMARK 620 3 ASP C 99 OD1 87.1 82.3 REMARK 620 4 ASP C 101 OD1 80.6 132.7 85.7 REMARK 620 5 ASP C 104 OD1 116.4 129.2 147.6 77.3 REMARK 620 6 ASP C 104 OD2 81.8 78.7 161.0 107.6 51.1 REMARK 620 7 ZDC E 301 O3 151.4 143.7 76.6 75.0 72.6 119.5 REMARK 620 8 ZDC E 301 O4 139.1 86.8 96.9 140.3 80.0 81.8 67.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 52.5 REMARK 620 3 ASP D 99 OD1 84.5 82.3 REMARK 620 4 ASP D 101 OD1 80.3 131.6 83.7 REMARK 620 5 ASP D 104 OD1 117.3 129.5 147.8 77.6 REMARK 620 6 ASP D 104 OD2 83.8 78.5 160.8 109.1 51.3 REMARK 620 7 ZDC F 201 O4 138.0 86.4 99.6 141.7 80.3 79.4 REMARK 620 8 ZDC F 201 O3 150.9 143.0 76.5 76.0 73.7 119.8 68.0 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 5NGQ A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NGQ A A0A069Q9V4 2 115 DBREF1 5NGQ B 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NGQ B A0A069Q9V4 2 115 DBREF1 5NGQ C 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NGQ C A0A069Q9V4 2 115 DBREF1 5NGQ D 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5NGQ D A0A069Q9V4 2 115 DBREF 5NGQ E 201 209 PDB 5NGQ 5NGQ 201 209 DBREF 5NGQ F 116 119 PDB 5NGQ 5NGQ 116 119 DBREF 5NGQ G 116 119 PDB 5NGQ 5NGQ 116 119 DBREF 5NGQ H 116 119 PDB 5NGQ 5NGQ 116 119 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 E 9 DLS PRO DAL CYS DTY ALA DCY LYS ALA SEQRES 1 F 4 LYS LYS LYS LYS SEQRES 1 G 4 LYS LYS LYS LYS SEQRES 1 H 4 LYS LYS LYS LYS HET DLS E 201 15 HET DAL E 204 5 HET DTY E 206 12 HET DCY E 208 6 HET CA A 301 1 HET CA A 302 1 HET CA B 301 1 HET CA B 302 1 HET CA C 201 1 HET CA C 202 1 HET CA D 201 1 HET CA D 202 1 HET ZDC E 301 13 HET ZDC F 201 13 HET ZDC G 201 13 HET ZDC H 201 13 HETNAM DLS DI-ACETYL-LYSINE HETNAM DAL D-ALANINE HETNAM DTY D-TYROSINE HETNAM DCY D-CYSTEINE HETNAM CA CALCIUM ION HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID FORMUL 5 DLS C10 H18 N2 O4 FORMUL 5 DAL C3 H7 N O2 FORMUL 5 DTY C9 H11 N O3 FORMUL 5 DCY C3 H7 N O2 S FORMUL 9 CA 8(CA 2+) FORMUL 17 ZDC 4(C8 H14 O6) FORMUL 21 HOH *456(H2 O) SHEET 1 A 4 VAL A 5 THR A 7 0 SHEET 2 A 4 LYS A 62 VAL A 69 -1 N VAL A 63 O PHE A 6 SHEET 3 A 4 GLN A 26 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 A 4 GLU A 35 GLY A 42 -1 N GLY A 42 O GLN A 26 SHEET 1 B 5 ASP A 75 LEU A 83 0 SHEET 2 B 5 LEU A 87 GLU A 95 -1 N GLU A 95 O ASP A 75 SHEET 3 B 5 ALA A 105 TRP A 111 -1 N TRP A 111 O ASN A 88 SHEET 4 B 5 ARG A 13 ALA A 20 -1 N PHE A 19 O VAL A 106 SHEET 5 B 5 ALA A 48 ASN A 56 -1 N LEU A 55 O PHE A 14 SHEET 1 C 4 VAL B 5 THR B 7 0 SHEET 2 C 4 LYS B 62 VAL B 69 -1 N VAL B 63 O PHE B 6 SHEET 3 C 4 GLN B 26 VAL B 32 -1 N LEU B 31 O GLN B 64 SHEET 4 C 4 GLU B 35 GLY B 42 -1 N GLY B 42 O GLN B 26 SHEET 1 D 5 ASP B 75 LEU B 83 0 SHEET 2 D 5 LEU B 87 GLU B 95 -1 N GLU B 95 O ASP B 75 SHEET 3 D 5 ALA B 105 TRP B 111 -1 N TRP B 111 O ASN B 88 SHEET 4 D 5 ARG B 13 ALA B 20 -1 N PHE B 19 O VAL B 106 SHEET 5 D 5 ALA B 48 ASN B 56 -1 N LEU B 55 O PHE B 14 SHEET 1 E 4 VAL C 5 THR C 7 0 SHEET 2 E 4 LYS C 62 SER C 68 -1 N VAL C 63 O PHE C 6 SHEET 3 E 4 GLN C 26 VAL C 32 -1 N LEU C 31 O GLN C 64 SHEET 4 E 4 GLU C 35 GLY C 42 -1 N GLY C 42 O GLN C 26 SHEET 1 F 5 ASP C 75 LEU C 83 0 SHEET 2 F 5 LEU C 87 GLU C 95 -1 N GLU C 95 O ASP C 75 SHEET 3 F 5 ALA C 105 TRP C 111 -1 N TRP C 111 O ASN C 88 SHEET 4 F 5 ARG C 13 ALA C 20 -1 N PHE C 19 O VAL C 106 SHEET 5 F 5 ALA C 48 ASN C 56 -1 N LEU C 55 O PHE C 14 SHEET 1 G 4 VAL D 5 THR D 7 0 SHEET 2 G 4 LYS D 62 SER D 68 -1 N VAL D 63 O PHE D 6 SHEET 3 G 4 GLN D 26 VAL D 32 -1 N LEU D 31 O GLN D 64 SHEET 4 G 4 GLU D 35 GLY D 42 -1 N GLY D 42 O GLN D 26 SHEET 1 H 5 ASP D 75 LEU D 83 0 SHEET 2 H 5 LEU D 87 GLU D 95 -1 N GLU D 95 O ASP D 75 SHEET 3 H 5 ALA D 105 TRP D 111 -1 N TRP D 111 O ASN D 88 SHEET 4 H 5 ARG D 13 ALA D 20 -1 N PHE D 19 O VAL D 106 SHEET 5 H 5 ALA D 48 ASN D 56 -1 N LEU D 55 O PHE D 14 LINK C DLS E 201 N PRO E 203 1555 1555 1.34 LINK C2 DLS E 201 SG CYS E 205 1555 1555 1.81 LINK CH3 DLS E 201 SG DCY E 208 1555 1555 1.82 LINK C PRO E 203 N DAL E 204 1555 1555 1.33 LINK C DAL E 204 N CYS E 205 1555 1555 1.33 LINK C CYS E 205 N DTY E 206 1555 1555 1.33 LINK C DTY E 206 N ALA E 207 1555 1555 1.33 LINK C ALA E 207 N DCY E 208 1555 1555 1.33 LINK C DCY E 208 N LYS E 209 1555 1555 1.32 LINK NZ LYS E 209 C7 ZDC E 301 1555 1555 1.32 LINK NZ LYS F 116 C7 ZDC F 201 1555 1555 1.43 LINK NZ LYS G 116 C7 ZDC G 201 1555 1555 1.43 LINK NZ LYS H 116 C7 ZDC H 201 1555 1555 1.43 LINK O ASN A 21 CA CA A 302 1555 1555 2.37 LINK OE1 GLU A 95 CA CA A 301 1555 1555 2.49 LINK OE2 GLU A 95 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 99 CA CA A 301 1555 1555 2.37 LINK OD1 ASP A 101 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 302 1555 1555 3.05 LINK OD2 ASP A 101 CA CA A 302 1555 1555 2.44 LINK OD1 ASN A 103 CA CA A 302 1555 1555 2.34 LINK OD1 ASP A 104 CA CA A 301 1555 1555 2.66 LINK OD2 ASP A 104 CA CA A 301 1555 1555 2.39 LINK OD1 ASP A 104 CA CA A 302 1555 1555 2.36 LINK O GLY A 114 CA CA C 201 1555 1555 2.43 LINK CA CA A 301 O3 ZDC G 201 1555 1555 2.44 LINK CA CA A 301 O4 ZDC G 201 1555 1555 2.52 LINK CA CA A 302 O GLY C 114 1555 1555 2.45 LINK CA CA A 302 O2 ZDC G 201 1555 1555 2.49 LINK CA CA A 302 O3 ZDC G 201 1555 1555 2.48 LINK O ASN B 21 CA CA B 302 1555 1555 2.39 LINK OE1 GLU B 95 CA CA B 301 1555 1555 2.46 LINK OE2 GLU B 95 CA CA B 301 1555 1555 2.41 LINK OD1 ASP B 99 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 101 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 101 CA CA B 302 1555 1555 3.02 LINK OD2 ASP B 101 CA CA B 302 1555 1555 2.43 LINK OD1 ASN B 103 CA CA B 302 1555 1555 2.36 LINK OD1 ASP B 104 CA CA B 301 1555 1555 2.65 LINK OD2 ASP B 104 CA CA B 301 1555 1555 2.39 LINK OD1 ASP B 104 CA CA B 302 1555 1555 2.39 LINK O GLY B 114 CA CA D 201 1555 1555 2.43 LINK CA CA B 301 O3 ZDC H 201 1555 1555 2.45 LINK CA CA B 301 O4 ZDC H 201 1555 1555 2.55 LINK CA CA B 302 O GLY D 114 1555 1555 2.45 LINK CA CA B 302 O2 ZDC H 201 1555 1555 2.46 LINK CA CA B 302 O3 ZDC H 201 1555 1555 2.49 LINK O ASN C 21 CA CA C 201 1555 1555 2.39 LINK OE1 GLU C 95 CA CA C 202 1555 1555 2.46 LINK OE2 GLU C 95 CA CA C 202 1555 1555 2.41 LINK OD1 ASP C 99 CA CA C 202 1555 1555 2.34 LINK OD1 ASP C 101 CA CA C 201 1555 1555 3.01 LINK OD2 ASP C 101 CA CA C 201 1555 1555 2.41 LINK OD1 ASP C 101 CA CA C 202 1555 1555 2.37 LINK OD1 ASN C 103 CA CA C 201 1555 1555 2.36 LINK OD1 ASP C 104 CA CA C 201 1555 1555 2.37 LINK OD1 ASP C 104 CA CA C 202 1555 1555 2.64 LINK OD2 ASP C 104 CA CA C 202 1555 1555 2.44 LINK CA CA C 201 O2 ZDC E 301 1555 1555 2.49 LINK CA CA C 201 O3 ZDC E 301 1555 1555 2.49 LINK CA CA C 202 O3 ZDC E 301 1555 1555 2.44 LINK CA CA C 202 O4 ZDC E 301 1555 1555 2.53 LINK O ASN D 21 CA CA D 201 1555 1555 2.37 LINK OE1 GLU D 95 CA CA D 202 1555 1555 2.52 LINK OE2 GLU D 95 CA CA D 202 1555 1555 2.44 LINK OD1 ASP D 99 CA CA D 202 1555 1555 2.34 LINK OD1 ASP D 101 CA CA D 201 1555 1555 3.00 LINK OD2 ASP D 101 CA CA D 201 1555 1555 2.43 LINK OD1 ASP D 101 CA CA D 202 1555 1555 2.38 LINK OD1 ASN D 103 CA CA D 201 1555 1555 2.34 LINK OD1 ASP D 104 CA CA D 201 1555 1555 2.37 LINK OD1 ASP D 104 CA CA D 202 1555 1555 2.63 LINK OD2 ASP D 104 CA CA D 202 1555 1555 2.40 LINK CA CA D 201 O2 ZDC F 201 1555 1555 2.48 LINK CA CA D 201 O3 ZDC F 201 1555 1555 2.52 LINK CA CA D 202 O4 ZDC F 201 1555 1555 2.53 LINK CA CA D 202 O3 ZDC F 201 1555 1555 2.46 CISPEP 1 TRP A 111 PRO A 112 0 -6.10 CISPEP 2 TRP B 111 PRO B 112 0 -3.40 CISPEP 3 TRP C 111 PRO C 112 0 -4.53 CISPEP 4 TRP D 111 PRO D 112 0 -5.28 CISPEP 5 DLS E 201 PRO E 203 0 -4.20 CRYST1 94.708 45.875 88.218 90.00 94.21 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010559 0.000000 0.000777 0.00000 SCALE2 0.000000 0.021798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011366 0.00000