HEADER TRANSFERASE 21-MAR-17 5NH3 TITLE CRYSTAL STRUCTURE OF THE ACTIVIN RECEPTOR TYPE-2A LIGAND BINDING TITLE 2 DOMAIN IN COMPLEX WITH BIMAGRUMAB FV COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVIN RECEPTOR TYPE-2A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACTIVIN RECEPTOR TYPE IIA,ACTRIIA; COMPND 5 EC: 2.7.11.30; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTI-HUMAN ACTRIIB MAB BYM338 FV HEAVY-CHAIN; COMPND 9 CHAIN: H, I; COMPND 10 SYNONYM: MOR08159_GERMLINED FV; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ANTI-HUMAN ACTRIIB MAB BYM338 FV LIGHT-CHAIN; COMPND 13 CHAIN: L, M; COMPND 14 SYNONYM: MOR08159_GERMLINED FV SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACVR2A, ACVR2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS OTHER, EPITOPE MAPPING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHEUFLER REVDAT 5 17-JAN-24 5NH3 1 HETSYN REVDAT 4 29-JUL-20 5NH3 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-MAR-20 5NH3 1 SEQRES REVDAT 2 29-NOV-17 5NH3 1 JRNL REVDAT 1 15-NOV-17 5NH3 0 JRNL AUTH F.MORVAN,J.M.RONDEAU,C.ZOU,G.MINETTI,C.SCHEUFLER, JRNL AUTH 2 M.SCHARENBERG,C.JACOBI,P.BREBBIA,V.RITTER,G.TOUSSAINT, JRNL AUTH 3 C.KOELBING,X.LEBER,A.SCHILB,F.WITTE,S.LEHMANN,E.KOCH, JRNL AUTH 4 S.GEISSE,D.J.GLASS,E.LACH-TRIFILIEFF JRNL TITL BLOCKADE OF ACTIVIN TYPE II RECEPTORS WITH A DUAL JRNL TITL 2 ANTI-ACTRIIA/IIB ANTIBODY IS CRITICAL TO PROMOTE MAXIMAL JRNL TITL 3 SKELETAL MUSCLE HYPERTROPHY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 12448 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29109273 JRNL DOI 10.1073/PNAS.1707925114 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 38338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2923 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2047 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2777 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84230 REMARK 3 B22 (A**2) : -8.65390 REMARK 3 B33 (A**2) : 5.81160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.66510 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.245 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.220 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.182 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.216 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.182 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5040 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6861 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1645 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 104 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 753 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5040 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 664 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5546 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 21.9916 19.8404 18.5369 REMARK 3 T TENSOR REMARK 3 T11: -0.1170 T22: -0.0527 REMARK 3 T33: -0.1354 T12: -0.0054 REMARK 3 T13: 0.0890 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.2405 L22: 1.9216 REMARK 3 L33: 6.5312 L12: 1.2940 REMARK 3 L13: 0.0751 L23: -0.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.1982 S12: 0.0437 S13: -0.1969 REMARK 3 S21: -0.1787 S22: 0.0285 S23: -0.1798 REMARK 3 S31: 0.0966 S32: 0.2839 S33: 0.1697 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.9485 -24.2590 0.7904 REMARK 3 T TENSOR REMARK 3 T11: -0.1099 T22: -0.0251 REMARK 3 T33: -0.1440 T12: 0.0064 REMARK 3 T13: 0.0495 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.8191 L22: 1.5990 REMARK 3 L33: 5.7185 L12: -0.6538 REMARK 3 L13: -0.4730 L23: 1.2083 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.0684 S13: 0.0406 REMARK 3 S21: -0.1703 S22: -0.0816 S23: -0.0857 REMARK 3 S31: -0.2793 S32: 0.1308 S33: 0.0236 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.5827 20.0199 34.2852 REMARK 3 T TENSOR REMARK 3 T11: -0.0770 T22: -0.0042 REMARK 3 T33: -0.0732 T12: 0.0025 REMARK 3 T13: -0.0211 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.8181 L22: 1.6531 REMARK 3 L33: 2.4875 L12: 0.1814 REMARK 3 L13: -0.8235 L23: -0.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.0974 S13: -0.0615 REMARK 3 S21: -0.0870 S22: -0.0103 S23: 0.1803 REMARK 3 S31: 0.0598 S32: -0.2238 S33: 0.0741 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { I|* } REMARK 3 ORIGIN FOR THE GROUP (A): 0.5649 -25.3326 16.6600 REMARK 3 T TENSOR REMARK 3 T11: -0.1111 T22: 0.0424 REMARK 3 T33: -0.0987 T12: 0.0038 REMARK 3 T13: -0.0148 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 3.3460 L22: 1.2825 REMARK 3 L33: 2.7814 L12: 0.2162 REMARK 3 L13: -1.0621 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.2148 S13: -0.1897 REMARK 3 S21: -0.0001 S22: -0.0882 S23: 0.1655 REMARK 3 S31: 0.0637 S32: -0.3706 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.7427 33.3548 46.7205 REMARK 3 T TENSOR REMARK 3 T11: -0.0419 T22: -0.0216 REMARK 3 T33: -0.0655 T12: -0.0072 REMARK 3 T13: -0.0259 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2905 L22: 1.3471 REMARK 3 L33: 2.7605 L12: 0.1652 REMARK 3 L13: -0.2674 L23: 0.9099 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0923 S13: 0.0059 REMARK 3 S21: -0.0086 S22: -0.0072 S23: 0.0130 REMARK 3 S31: -0.2374 S32: 0.0941 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { M|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.7485 -13.0783 30.2326 REMARK 3 T TENSOR REMARK 3 T11: -0.0346 T22: -0.0222 REMARK 3 T33: -0.0751 T12: -0.0026 REMARK 3 T13: -0.0153 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.4294 L22: 2.1139 REMARK 3 L33: 2.6262 L12: -0.5767 REMARK 3 L13: -0.3291 L23: 0.8120 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.1328 S13: 0.0598 REMARK 3 S21: 0.0683 S22: -0.0550 S23: 0.0280 REMARK 3 S31: -0.2594 S32: -0.0322 S33: 0.0542 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH3.5 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.10350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, I, M, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 GLU A 119 REMARK 465 MET A 120 REMARK 465 GLU A 121 REMARK 465 VAL A 122 REMARK 465 THR A 123 REMARK 465 GLN A 124 REMARK 465 PRO A 125 REMARK 465 THR A 126 REMARK 465 SER A 127 REMARK 465 ASN A 128 REMARK 465 PRO A 129 REMARK 465 VAL A 130 REMARK 465 THR A 131 REMARK 465 PRO A 132 REMARK 465 LYS A 133 REMARK 465 PRO A 134 REMARK 465 PRO A 135 REMARK 465 GLU A 136 REMARK 465 PHE A 137 REMARK 465 ARG A 138 REMARK 465 HIS A 139 REMARK 465 ASP A 140 REMARK 465 SER A 141 REMARK 465 ALA B 20 REMARK 465 ILE B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 MET B 120 REMARK 465 GLU B 121 REMARK 465 VAL B 122 REMARK 465 THR B 123 REMARK 465 GLN B 124 REMARK 465 PRO B 125 REMARK 465 THR B 126 REMARK 465 SER B 127 REMARK 465 ASN B 128 REMARK 465 PRO B 129 REMARK 465 VAL B 130 REMARK 465 THR B 131 REMARK 465 PRO B 132 REMARK 465 LYS B 133 REMARK 465 PRO B 134 REMARK 465 PRO B 135 REMARK 465 GLU B 136 REMARK 465 PHE B 137 REMARK 465 ARG B 138 REMARK 465 HIS B 139 REMARK 465 ASP B 140 REMARK 465 SER B 141 REMARK 465 SER H 115 REMARK 465 HIS H 116 REMARK 465 HIS H 117 REMARK 465 HIS H 118 REMARK 465 HIS H 119 REMARK 465 HIS H 120 REMARK 465 HIS H 121 REMARK 465 SER I 115 REMARK 465 HIS I 116 REMARK 465 HIS I 117 REMARK 465 HIS I 118 REMARK 465 HIS I 119 REMARK 465 HIS I 120 REMARK 465 HIS I 121 REMARK 465 GLN L 1 REMARK 465 SER L 113 REMARK 465 HIS L 114 REMARK 465 PRO L 115 REMARK 465 GLN L 116 REMARK 465 PHE L 117 REMARK 465 GLU L 118 REMARK 465 LYS L 119 REMARK 465 GLN M 1 REMARK 465 SER M 113 REMARK 465 HIS M 114 REMARK 465 PRO M 115 REMARK 465 GLN M 116 REMARK 465 PHE M 117 REMARK 465 GLU M 118 REMARK 465 LYS M 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 25 OG REMARK 470 GLU A 26 CD OE1 OE2 REMARK 470 GLU A 38 CD OE1 OE2 REMARK 470 LYS A 39 CD CE NZ REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 SER A 68 OG REMARK 470 LYS A 95 CD CE NZ REMARK 470 PHE A 117 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 25 OG REMARK 470 GLU B 26 CD OE1 OE2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ASP B 55 CG OD1 OD2 REMARK 470 LYS B 56 CE NZ REMARK 470 GLU B 99 CD OE1 OE2 REMARK 470 LYS B 113 CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS H 13 CD CE NZ REMARK 470 GLN H 62 CD OE1 NE2 REMARK 470 LYS I 13 CG CD CE NZ REMARK 470 GLN I 62 CD OE1 NE2 REMARK 470 SER L 2 OG REMARK 470 LYS L 55 CE NZ REMARK 470 LYS L 107 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -167.17 -166.30 REMARK 500 ASP A 81 105.09 -28.28 REMARK 500 ASP B 53 -167.72 -167.88 REMARK 500 ASP B 81 114.70 -28.49 REMARK 500 ASP L 28 -83.55 -123.65 REMARK 500 ASN L 33 56.77 -97.50 REMARK 500 VAL L 53 -55.40 73.00 REMARK 500 LEU L 80 118.28 -37.78 REMARK 500 ALA L 86 -175.78 -173.49 REMARK 500 ASP M 28 -85.94 -124.36 REMARK 500 ASN M 33 57.10 -97.78 REMARK 500 VAL M 53 -54.54 72.70 REMARK 500 LEU M 80 126.04 -36.65 REMARK 500 ALA M 86 -176.37 -174.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NH3 A 20 135 UNP P27037 AVR2A_HUMAN 20 135 DBREF 5NH3 B 20 135 UNP P27037 AVR2A_HUMAN 20 135 DBREF 5NH3 H 1 121 PDB 5NH3 5NH3 1 121 DBREF 5NH3 I 1 121 PDB 5NH3 5NH3 1 121 DBREF 5NH3 L 1 119 PDB 5NH3 5NH3 1 119 DBREF 5NH3 M 1 119 PDB 5NH3 5NH3 1 119 SEQADV 5NH3 GLU A 136 UNP P27037 EXPRESSION TAG SEQADV 5NH3 PHE A 137 UNP P27037 EXPRESSION TAG SEQADV 5NH3 ARG A 138 UNP P27037 EXPRESSION TAG SEQADV 5NH3 HIS A 139 UNP P27037 EXPRESSION TAG SEQADV 5NH3 ASP A 140 UNP P27037 EXPRESSION TAG SEQADV 5NH3 SER A 141 UNP P27037 EXPRESSION TAG SEQADV 5NH3 GLU B 136 UNP P27037 EXPRESSION TAG SEQADV 5NH3 PHE B 137 UNP P27037 EXPRESSION TAG SEQADV 5NH3 ARG B 138 UNP P27037 EXPRESSION TAG SEQADV 5NH3 HIS B 139 UNP P27037 EXPRESSION TAG SEQADV 5NH3 ASP B 140 UNP P27037 EXPRESSION TAG SEQADV 5NH3 SER B 141 UNP P27037 EXPRESSION TAG SEQRES 1 A 122 ALA ILE LEU GLY ARG SER GLU THR GLN GLU CYS LEU PHE SEQRES 2 A 122 PHE ASN ALA ASN TRP GLU LYS ASP ARG THR ASN GLN THR SEQRES 3 A 122 GLY VAL GLU PRO CYS TYR GLY ASP LYS ASP LYS ARG ARG SEQRES 4 A 122 HIS CYS PHE ALA THR TRP LYS ASN ILE SER GLY SER ILE SEQRES 5 A 122 GLU ILE VAL LYS GLN GLY CYS TRP LEU ASP ASP ILE ASN SEQRES 6 A 122 CYS TYR ASP ARG THR ASP CYS VAL GLU LYS LYS ASP SER SEQRES 7 A 122 PRO GLU VAL TYR PHE CYS CYS CYS GLU GLY ASN MET CYS SEQRES 8 A 122 ASN GLU LYS PHE SER TYR PHE PRO GLU MET GLU VAL THR SEQRES 9 A 122 GLN PRO THR SER ASN PRO VAL THR PRO LYS PRO PRO GLU SEQRES 10 A 122 PHE ARG HIS ASP SER SEQRES 1 B 122 ALA ILE LEU GLY ARG SER GLU THR GLN GLU CYS LEU PHE SEQRES 2 B 122 PHE ASN ALA ASN TRP GLU LYS ASP ARG THR ASN GLN THR SEQRES 3 B 122 GLY VAL GLU PRO CYS TYR GLY ASP LYS ASP LYS ARG ARG SEQRES 4 B 122 HIS CYS PHE ALA THR TRP LYS ASN ILE SER GLY SER ILE SEQRES 5 B 122 GLU ILE VAL LYS GLN GLY CYS TRP LEU ASP ASP ILE ASN SEQRES 6 B 122 CYS TYR ASP ARG THR ASP CYS VAL GLU LYS LYS ASP SER SEQRES 7 B 122 PRO GLU VAL TYR PHE CYS CYS CYS GLU GLY ASN MET CYS SEQRES 8 B 122 ASN GLU LYS PHE SER TYR PHE PRO GLU MET GLU VAL THR SEQRES 9 B 122 GLN PRO THR SER ASN PRO VAL THR PRO LYS PRO PRO GLU SEQRES 10 B 122 PHE ARG HIS ASP SER SEQRES 1 H 121 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 121 TYR THR PHE THR SER SER TYR ILE ASN TRP VAL ARG GLN SEQRES 4 H 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY THR ILE ASN SEQRES 5 H 121 PRO VAL SER GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 H 121 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 121 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP PHE ASP TYR SEQRES 9 H 121 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER HIS HIS SEQRES 10 H 121 HIS HIS HIS HIS SEQRES 1 I 121 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 I 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 I 121 TYR THR PHE THR SER SER TYR ILE ASN TRP VAL ARG GLN SEQRES 4 I 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY THR ILE ASN SEQRES 5 I 121 PRO VAL SER GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 I 121 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 I 121 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 I 121 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP PHE ASP TYR SEQRES 9 I 121 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER HIS HIS SEQRES 10 I 121 HIS HIS HIS HIS SEQRES 1 L 119 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 119 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 119 SER ASP VAL GLY SER TYR ASN TYR VAL ASN TRP TYR GLN SEQRES 4 L 119 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLY SEQRES 5 L 119 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 119 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 119 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 119 THR PHE ALA GLY GLY SER TYR TYR GLY VAL PHE GLY GLY SEQRES 9 L 119 GLY THR LYS LEU THR VAL LEU TRP SER HIS PRO GLN PHE SEQRES 10 L 119 GLU LYS SEQRES 1 M 119 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 M 119 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 M 119 SER ASP VAL GLY SER TYR ASN TYR VAL ASN TRP TYR GLN SEQRES 4 M 119 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLY SEQRES 5 M 119 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 M 119 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 M 119 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 M 119 THR PHE ALA GLY GLY SER TYR TYR GLY VAL PHE GLY GLY SEQRES 9 M 119 GLY THR LYS LEU THR VAL LEU TRP SER HIS PRO GLN PHE SEQRES 10 M 119 GLU LYS MODRES 5NH3 PCA H 1 GLN PYROGLUTAMIC ACID MODRES 5NH3 PCA I 1 GLN PYROGLUTAMIC ACID HET PCA H 1 8 HET PCA I 1 8 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 501 14 HET NAG A 502 14 HET NAG B 501 14 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 PCA 2(C5 H7 N O3) FORMUL 7 NAG 5(C8 H15 N O6) FORMUL 11 HOH *361(H2 O) HELIX 1 AA1 ASN A 36 ARG A 41 1 6 HELIX 2 AA2 MET A 109 LYS A 113 5 5 HELIX 3 AA3 ASN B 36 ARG B 41 1 6 HELIX 4 AA4 MET B 109 LYS B 113 5 5 HELIX 5 AA5 THR H 28 SER H 32 5 5 HELIX 6 AA6 GLN H 62 GLN H 65 5 4 HELIX 7 AA7 THR H 74 ILE H 76 5 3 HELIX 8 AA8 ARG H 87 THR H 91 5 5 HELIX 9 AA9 THR I 28 SER I 32 5 5 HELIX 10 AB1 GLN I 62 GLN I 65 5 4 HELIX 11 AB2 THR I 74 ILE I 76 5 3 HELIX 12 AB3 ARG I 87 THR I 91 5 5 HELIX 13 AB4 GLN L 81 GLU L 85 5 5 HELIX 14 AB5 GLN M 81 GLU M 85 5 5 SHEET 1 AA1 5 THR A 45 PRO A 49 0 SHEET 2 AA1 5 GLU A 29 ASN A 34 -1 N CYS A 30 O GLU A 48 SHEET 3 AA1 5 SER A 70 LEU A 80 -1 O GLN A 76 N PHE A 33 SHEET 4 AA1 5 ARG A 58 ILE A 67 -1 N LYS A 65 O GLU A 72 SHEET 5 AA1 5 TYR A 101 CYS A 105 -1 O TYR A 101 N TRP A 64 SHEET 1 AA2 2 VAL A 92 GLU A 93 0 SHEET 2 AA2 2 SER A 115 TYR A 116 1 O SER A 115 N GLU A 93 SHEET 1 AA3 5 THR B 45 PRO B 49 0 SHEET 2 AA3 5 GLU B 29 ASN B 34 -1 N PHE B 32 O GLY B 46 SHEET 3 AA3 5 SER B 70 LEU B 80 -1 O GLN B 76 N PHE B 33 SHEET 4 AA3 5 ARG B 58 ILE B 67 -1 N LYS B 65 O GLU B 72 SHEET 5 AA3 5 TYR B 101 CYS B 105 -1 O TYR B 101 N TRP B 64 SHEET 1 AA4 2 VAL B 92 GLU B 93 0 SHEET 2 AA4 2 SER B 115 TYR B 116 1 O SER B 115 N GLU B 93 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA5 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA5 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 109 VAL H 113 1 O THR H 112 N LYS H 12 SHEET 3 AA6 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 109 SHEET 4 AA6 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA6 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA6 6 THR H 58 TYR H 60 -1 O SER H 59 N THR H 50 SHEET 1 AA7 4 GLN I 3 GLN I 6 0 SHEET 2 AA7 4 VAL I 18 SER I 25 -1 O LYS I 23 N VAL I 5 SHEET 3 AA7 4 THR I 78 LEU I 83 -1 O MET I 81 N VAL I 20 SHEET 4 AA7 4 VAL I 68 ASP I 73 -1 N ASP I 73 O THR I 78 SHEET 1 AA8 6 GLU I 10 LYS I 12 0 SHEET 2 AA8 6 THR I 109 VAL I 113 1 O THR I 112 N LYS I 12 SHEET 3 AA8 6 ALA I 92 ARG I 98 -1 N TYR I 94 O THR I 109 SHEET 4 AA8 6 ILE I 34 GLN I 39 -1 N VAL I 37 O TYR I 95 SHEET 5 AA8 6 LEU I 45 ILE I 51 -1 O MET I 48 N TRP I 36 SHEET 6 AA8 6 THR I 58 TYR I 60 -1 O SER I 59 N THR I 50 SHEET 1 AA9 5 SER L 9 GLY L 12 0 SHEET 2 AA9 5 THR L 106 VAL L 110 1 O THR L 109 N VAL L 10 SHEET 3 AA9 5 ALA L 86 THR L 92 -1 N ALA L 86 O LEU L 108 SHEET 4 AA9 5 VAL L 35 GLN L 40 -1 N ASN L 36 O GLY L 91 SHEET 5 AA9 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AB1 3 ILE L 18 THR L 23 0 SHEET 2 AB1 3 THR L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AB1 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AB2 5 SER M 9 GLY M 12 0 SHEET 2 AB2 5 THR M 106 VAL M 110 1 O THR M 109 N VAL M 10 SHEET 3 AB2 5 ALA M 86 THR M 92 -1 N ALA M 86 O LEU M 108 SHEET 4 AB2 5 VAL M 35 GLN M 40 -1 N ASN M 36 O GLY M 91 SHEET 5 AB2 5 LYS M 47 ILE M 50 -1 O MET M 49 N TRP M 37 SHEET 1 AB3 3 ILE M 18 THR M 23 0 SHEET 2 AB3 3 THR M 72 ILE M 77 -1 O ILE M 77 N ILE M 18 SHEET 3 AB3 3 PHE M 64 SER M 69 -1 N SER M 65 O THR M 76 SSBOND 1 CYS A 30 CYS A 60 1555 1555 2.04 SSBOND 2 CYS A 50 CYS A 78 1555 1555 2.08 SSBOND 3 CYS A 85 CYS A 104 1555 1555 2.03 SSBOND 4 CYS A 91 CYS A 103 1555 1555 2.05 SSBOND 5 CYS A 105 CYS A 110 1555 1555 2.04 SSBOND 6 CYS B 30 CYS B 60 1555 1555 2.03 SSBOND 7 CYS B 50 CYS B 78 1555 1555 2.07 SSBOND 8 CYS B 85 CYS B 104 1555 1555 2.03 SSBOND 9 CYS B 91 CYS B 103 1555 1555 2.05 SSBOND 10 CYS B 105 CYS B 110 1555 1555 2.06 SSBOND 11 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 12 CYS I 22 CYS I 96 1555 1555 2.05 SSBOND 13 CYS L 22 CYS L 90 1555 1555 2.07 SSBOND 14 CYS M 22 CYS M 90 1555 1555 2.06 LINK ND2 ASN A 43 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN A 66 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN B 43 C1 NAG B 501 1555 1555 1.43 LINK ND2 ASN B 66 C1 NAG C 1 1555 1555 1.44 LINK C PCA H 1 N VAL H 2 1555 1555 1.34 LINK C PCA I 1 N VAL I 2 1555 1555 1.35 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 44.330 108.207 100.685 90.00 98.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022558 0.000000 0.003271 0.00000 SCALE2 0.000000 0.009242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010036 0.00000