HEADER IMMUNE SYSTEM 22-MAR-17 5NHR TITLE CRYSTAL STRUCTURE OF THE ACTIVIN RECEPTOR TYPE-2B LIGAND BINDING TITLE 2 DOMAIN IN COMPLEX WITH BIMAGRUMAB FV, CUBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIMAGRUMAB FV LIGHT-CHAIN; COMPND 3 CHAIN: L, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: VL DOMAIN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BIMAGRUMAB FV HEAVY-CHAIN; COMPND 9 CHAIN: H, A; COMPND 10 FRAGMENT: VH; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ACTIVIN RECEPTOR TYPE-2B; COMPND 14 CHAIN: C, D; COMPND 15 FRAGMENT: VL, UNP RESIDUES 24-117; COMPND 16 SYNONYM: ACTIVIN RECEPTOR TYPE IIB,ACTR-IIB; COMPND 17 EC: 2.7.11.30; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: ACVR2B; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: SHUFFLE; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THREE-FINGER TOXIN FOLD, ANTIBODY FV FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-M.RONDEAU REVDAT 4 17-JAN-24 5NHR 1 REMARK REVDAT 3 31-JAN-18 5NHR 1 AUTHOR JRNL REVDAT 2 29-NOV-17 5NHR 1 JRNL REVDAT 1 15-NOV-17 5NHR 0 JRNL AUTH F.MORVAN,J.-M.RONDEAU,C.ZOU,G.MINETTI,C.SCHEUFLER, JRNL AUTH 2 M.SCHARENBERG,C.JACOBI,P.BREBBIA,V.RITTER,G.TOUSSAINT, JRNL AUTH 3 C.KOELBING,X.LEBER,A.SCHILB,F.WITTE,S.LEHMANN,E.KOCH, JRNL AUTH 4 S.GEISSE,D.J.GLASS,E.LACH-TRIFILIEFF JRNL TITL BLOCKADE OF ACTIVIN TYPE II RECEPTORS WITH A DUAL JRNL TITL 2 ANTI-ACTRIIA/IIB ANTIBODY IS CRITICAL TO PROMOTE MAXIMAL JRNL TITL 3 SKELETAL MUSCLE HYPERTROPHY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 12448 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29109273 JRNL DOI 10.1073/PNAS.1707925114 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 28995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.181 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.086 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.567 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.621 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200004159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28995 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: 2H64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE, PH 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 SER L 113 REMARK 465 HIS L 114 REMARK 465 PRO L 115 REMARK 465 GLN L 116 REMARK 465 PHE L 117 REMARK 465 GLU L 118 REMARK 465 LYS L 119 REMARK 465 HIS H 116 REMARK 465 HIS H 117 REMARK 465 HIS H 118 REMARK 465 HIS H 119 REMARK 465 HIS H 120 REMARK 465 HIS H 121 REMARK 465 GLN B 1 REMARK 465 GLN B 116 REMARK 465 PHE B 117 REMARK 465 GLU B 118 REMARK 465 LYS B 119 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 GLY C 19 REMARK 465 PRO C 20 REMARK 465 LYS C 21 REMARK 465 ALA C 22 REMARK 465 MET C 23 REMARK 465 ALA C 24 REMARK 465 GLU C 25 REMARK 465 THR C 26 REMARK 465 PRO C 117 REMARK 465 GLY D 19 REMARK 465 PRO D 20 REMARK 465 LYS D 21 REMARK 465 ALA D 22 REMARK 465 MET D 23 REMARK 465 ALA D 24 REMARK 465 GLU D 25 REMARK 465 THR D 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN D 43 OE1 GLN D 43 3655 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 28 -83.83 -107.69 REMARK 500 VAL L 53 -42.01 72.38 REMARK 500 SER L 54 -6.18 -144.51 REMARK 500 ALA H 16 -156.08 -65.10 REMARK 500 ARG H 67 4.13 -159.99 REMARK 500 LEU H 86 176.93 -58.58 REMARK 500 ARG H 87 -154.13 -151.59 REMARK 500 ASP H 89 32.29 -77.09 REMARK 500 ASP B 28 -84.35 -108.16 REMARK 500 VAL B 53 -42.24 72.04 REMARK 500 SER B 54 -6.09 -144.74 REMARK 500 LEU B 111 -154.21 -103.64 REMARK 500 SER B 113 112.13 64.47 REMARK 500 ALA A 16 -155.75 -64.98 REMARK 500 GLN A 65 108.21 -54.35 REMARK 500 ARG A 67 3.91 -161.00 REMARK 500 LEU A 86 -174.09 -58.51 REMARK 500 ARG A 87 -157.95 -167.39 REMARK 500 ASP A 89 32.39 -75.94 REMARK 500 GLN C 43 -63.04 -103.29 REMARK 500 GLN C 53 101.31 -55.52 REMARK 500 ASP C 80 113.47 -35.73 REMARK 500 GLU C 95 -77.31 -73.87 REMARK 500 GLN C 98 -72.82 -59.51 REMARK 500 THR C 114 -158.26 -131.97 REMARK 500 GLN D 43 -62.75 -102.39 REMARK 500 GLN D 53 101.09 -56.38 REMARK 500 ASP D 80 113.55 -34.87 REMARK 500 GLU D 95 -76.83 -75.16 REMARK 500 GLN D 98 -72.10 -60.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NHR L 1 119 PDB 5NHR 5NHR 1 119 DBREF 5NHR H 1 121 PDB 5NHR 5NHR 1 121 DBREF 5NHR B 1 119 PDB 5NHR 5NHR 1 119 DBREF 5NHR A 1 121 PDB 5NHR 5NHR 1 121 DBREF 5NHR C 24 117 UNP Q13705 AVR2B_HUMAN 24 117 DBREF 5NHR D 24 117 UNP Q13705 AVR2B_HUMAN 24 117 SEQADV 5NHR GLY C 19 UNP Q13705 EXPRESSION TAG SEQADV 5NHR PRO C 20 UNP Q13705 EXPRESSION TAG SEQADV 5NHR LYS C 21 UNP Q13705 EXPRESSION TAG SEQADV 5NHR ALA C 22 UNP Q13705 EXPRESSION TAG SEQADV 5NHR MET C 23 UNP Q13705 EXPRESSION TAG SEQADV 5NHR GLY D 19 UNP Q13705 EXPRESSION TAG SEQADV 5NHR PRO D 20 UNP Q13705 EXPRESSION TAG SEQADV 5NHR LYS D 21 UNP Q13705 EXPRESSION TAG SEQADV 5NHR ALA D 22 UNP Q13705 EXPRESSION TAG SEQADV 5NHR MET D 23 UNP Q13705 EXPRESSION TAG SEQRES 1 L 119 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 119 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 119 SER ASP VAL GLY SER TYR ASN TYR VAL ASN TRP TYR GLN SEQRES 4 L 119 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLY SEQRES 5 L 119 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 119 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 119 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 119 THR PHE ALA GLY GLY SER TYR TYR GLY VAL PHE GLY GLY SEQRES 9 L 119 GLY THR LYS LEU THR VAL LEU TRP SER HIS PRO GLN PHE SEQRES 10 L 119 GLU LYS SEQRES 1 H 121 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 121 TYR THR PHE THR SER SER TYR ILE ASN TRP VAL ARG GLN SEQRES 4 H 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY THR ILE ASN SEQRES 5 H 121 PRO VAL SER GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 H 121 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 121 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP PHE ASP TYR SEQRES 9 H 121 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER HIS HIS SEQRES 10 H 121 HIS HIS HIS HIS SEQRES 1 B 119 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 B 119 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 B 119 SER ASP VAL GLY SER TYR ASN TYR VAL ASN TRP TYR GLN SEQRES 4 B 119 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLY SEQRES 5 B 119 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 B 119 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 B 119 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 B 119 THR PHE ALA GLY GLY SER TYR TYR GLY VAL PHE GLY GLY SEQRES 9 B 119 GLY THR LYS LEU THR VAL LEU TRP SER HIS PRO GLN PHE SEQRES 10 B 119 GLU LYS SEQRES 1 A 121 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 121 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 121 TYR THR PHE THR SER SER TYR ILE ASN TRP VAL ARG GLN SEQRES 4 A 121 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY THR ILE ASN SEQRES 5 A 121 PRO VAL SER GLY SER THR SER TYR ALA GLN LYS PHE GLN SEQRES 6 A 121 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 A 121 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 A 121 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP PHE ASP TYR SEQRES 9 A 121 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS SEQRES 1 C 99 GLY PRO LYS ALA MET ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 C 99 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 C 99 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 C 99 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 C 99 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 C 99 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 C 99 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 C 99 ASN GLU ARG PHE THR HIS LEU PRO SEQRES 1 D 99 GLY PRO LYS ALA MET ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 D 99 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 D 99 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 D 99 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 D 99 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 D 99 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 D 99 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 D 99 ASN GLU ARG PHE THR HIS LEU PRO HELIX 1 AA1 GLN L 81 GLU L 85 5 5 HELIX 2 AA2 THR H 28 SER H 32 5 5 HELIX 3 AA3 GLN H 62 GLN H 65 5 4 HELIX 4 AA4 GLN B 81 GLU B 85 5 5 HELIX 5 AA5 THR A 28 SER A 32 5 5 HELIX 6 AA6 GLN A 62 GLN A 65 5 4 HELIX 7 AA7 THR A 74 ILE A 76 5 3 HELIX 8 AA8 ASP C 81 TYR C 85 5 5 HELIX 9 AA9 PHE C 108 GLU C 111 5 4 HELIX 10 AB1 ASP D 81 TYR D 85 5 5 HELIX 11 AB2 PHE D 108 GLU D 111 5 4 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 106 VAL L 110 1 O THR L 109 N VAL L 10 SHEET 3 AA1 5 ALA L 86 THR L 92 -1 N TYR L 88 O THR L 106 SHEET 4 AA1 5 VAL L 35 GLN L 40 -1 N TYR L 38 O TYR L 89 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AA2 3 ILE L 18 THR L 23 0 SHEET 2 AA2 3 THR L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AA2 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 SER H 17 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA3 4 THR H 78 SER H 84 -1 O MET H 81 N VAL H 20 SHEET 4 AA3 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA4 6 GLU H 10 LYS H 12 0 SHEET 2 AA4 6 THR H 109 VAL H 113 1 O THR H 112 N GLU H 10 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 111 SHEET 4 AA4 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O SER H 59 N THR H 50 SHEET 1 AA5 5 SER B 9 GLY B 12 0 SHEET 2 AA5 5 THR B 106 VAL B 110 1 O THR B 109 N VAL B 10 SHEET 3 AA5 5 ALA B 86 THR B 92 -1 N TYR B 88 O THR B 106 SHEET 4 AA5 5 VAL B 35 GLN B 40 -1 N TYR B 38 O TYR B 89 SHEET 5 AA5 5 LYS B 47 ILE B 50 -1 O MET B 49 N TRP B 37 SHEET 1 AA6 3 ILE B 18 THR B 23 0 SHEET 2 AA6 3 THR B 72 ILE B 77 -1 O LEU B 75 N ILE B 20 SHEET 3 AA6 3 PHE B 64 SER B 69 -1 N SER B 65 O THR B 76 SHEET 1 AA7 4 GLN A 3 GLN A 6 0 SHEET 2 AA7 4 SER A 17 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA7 4 THR A 78 SER A 84 -1 O MET A 81 N VAL A 20 SHEET 4 AA7 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AA8 6 GLU A 10 LYS A 12 0 SHEET 2 AA8 6 THR A 109 VAL A 113 1 O THR A 112 N GLU A 10 SHEET 3 AA8 6 ALA A 92 ARG A 98 -1 N ALA A 92 O VAL A 111 SHEET 4 AA8 6 ILE A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA8 6 GLU A 46 ILE A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AA8 6 THR A 58 TYR A 60 -1 O SER A 59 N THR A 50 SHEET 1 AA9 5 SER C 44 ARG C 48 0 SHEET 2 AA9 5 GLU C 28 ASN C 33 -1 N TYR C 31 O GLY C 45 SHEET 3 AA9 5 THR C 69 LEU C 79 -1 O LYS C 75 N TYR C 32 SHEET 4 AA9 5 LEU C 57 SER C 66 -1 N ARG C 64 O GLU C 71 SHEET 5 AA9 5 VAL C 99 CYS C 104 -1 O TYR C 100 N TRP C 63 SHEET 1 AB1 2 CYS C 90 ALA C 92 0 SHEET 2 AB1 2 PHE C 113 HIS C 115 1 O THR C 114 N CYS C 90 SHEET 1 AB2 5 SER D 44 ARG D 48 0 SHEET 2 AB2 5 GLU D 28 ASN D 33 -1 N TYR D 31 O GLY D 45 SHEET 3 AB2 5 THR D 69 LEU D 79 -1 O LYS D 75 N TYR D 32 SHEET 4 AB2 5 LEU D 57 SER D 66 -1 N ARG D 64 O GLU D 71 SHEET 5 AB2 5 VAL D 99 CYS D 104 -1 O TYR D 100 N TRP D 63 SHEET 1 AB3 2 CYS D 90 ALA D 92 0 SHEET 2 AB3 2 PHE D 113 HIS D 115 1 O THR D 114 N CYS D 90 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 90 1555 1555 2.04 SSBOND 4 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 5 CYS C 29 CYS C 59 1555 1555 2.03 SSBOND 6 CYS C 49 CYS C 77 1555 1555 2.05 SSBOND 7 CYS C 84 CYS C 103 1555 1555 2.03 SSBOND 8 CYS C 90 CYS C 102 1555 1555 2.04 SSBOND 9 CYS C 104 CYS C 109 1555 1555 2.05 SSBOND 10 CYS D 29 CYS D 59 1555 1555 2.02 SSBOND 11 CYS D 49 CYS D 77 1555 1555 2.04 SSBOND 12 CYS D 84 CYS D 103 1555 1555 2.04 SSBOND 13 CYS D 90 CYS D 102 1555 1555 2.04 SSBOND 14 CYS D 104 CYS D 109 1555 1555 2.04 CRYST1 187.826 187.826 187.826 90.00 90.00 90.00 P 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005324 0.00000