HEADER OXIDOREDUCTASE 22-MAR-17 5NHS TITLE THE CRYSTAL STRUCTURE OF XANTHOMONAS ALBILINEANS N5, N10- TITLE 2 METHYLENETETRAHYDROFOLATE DEHYDROGENASE-CYCLOHYDROLASE (FOLD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN FOLD; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.4.9,1.5.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS ALBILINEANS GPE PC73; SOURCE 3 ORGANISM_TAXID: 380358; SOURCE 4 GENE: FOLD, XALC_1581; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETTRX KEYWDS OXIDOREDUCTASE, BIFUNCTIONAL PROTEIN DEHYDROGENASE CYCLOHYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.V.BUENO,R.V.C.GUIDO,F.V.MALUF,G.M.A.LIMA,A.A.OLIVEIRA REVDAT 3 23-OCT-24 5NHS 1 REMARK REVDAT 2 17-JAN-24 5NHS 1 REMARK REVDAT 1 16-MAY-18 5NHS 0 JRNL AUTH R.V.BUENO,R.V.C.GUIDO,F.V.MALUF,G.M.A.LIMA,A.A.OLIVEIRA JRNL TITL THE CRYSTAL STRUCTURE OF XANTHOMONAS ALBILINEANS N5, JRNL TITL 2 N10-METHYLENETETRAHYDROFOLATE DEHYDROGENASE-CYCLOHYDROLASE JRNL TITL 3 (FOLD) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 1.42000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4222 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4152 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5753 ; 2.148 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9548 ; 1.148 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 6.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;32.798 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;14.599 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 689 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4732 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2240 ; 1.916 ; 2.282 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2239 ; 1.916 ; 2.281 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2793 ; 3.051 ; 3.405 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2794 ; 3.051 ; 3.407 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 2.551 ; 2.658 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1983 ; 2.550 ; 2.659 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2961 ; 4.070 ; 3.849 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4656 ; 7.021 ;29.641 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4625 ; 7.013 ;29.383 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 294 B 10 294 16584 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6940 20.1320 -85.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0534 REMARK 3 T33: 0.3211 T12: -0.0346 REMARK 3 T13: -0.0382 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.3531 L22: 1.2777 REMARK 3 L33: 2.6498 L12: 0.4757 REMARK 3 L13: 0.6237 L23: 1.7613 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.0735 S13: 0.1505 REMARK 3 S21: -0.0451 S22: 0.0518 S23: 0.0885 REMARK 3 S31: -0.0237 S32: 0.0495 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6300 -2.5360 -76.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.1193 REMARK 3 T33: 0.2647 T12: 0.0150 REMARK 3 T13: -0.0254 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 2.2239 L22: 0.3560 REMARK 3 L33: 2.9551 L12: -0.7126 REMARK 3 L13: -2.1066 L23: 0.4908 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: -0.1215 S13: -0.0250 REMARK 3 S21: -0.0691 S22: -0.0591 S23: 0.0075 REMARK 3 S31: -0.0677 S32: 0.2384 S33: -0.0289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200003352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45864 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 66.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1B0A REMARK 200 REMARK 200 REMARK: SMALL CRYSTAL, THIN PLATE, ORTHORHOMBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M MALIC ACID, 20% PEG 3350, 0.1 M REMARK 280 SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.64750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.20200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.64750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.20200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 PHE A 132 REMARK 465 HIS A 133 REMARK 465 PRO A 134 REMARK 465 GLN A 135 REMARK 465 ASN A 136 REMARK 465 VAL A 137 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 PHE B 132 REMARK 465 HIS B 133 REMARK 465 PRO B 134 REMARK 465 GLN B 135 REMARK 465 ASN B 136 REMARK 465 VAL B 137 REMARK 465 ARG B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 153 CD NE CZ NH1 NH2 REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 179 NE2 HIS B 179 1.93 REMARK 500 O HOH B 1181 O HOH B 1198 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 18 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 53 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 143 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU B 186 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP B 205 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 130 -70.76 -88.17 REMARK 500 THR A 151 69.99 -119.91 REMARK 500 ASP B 130 -70.08 -89.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1240 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B1241 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1242 DISTANCE = 7.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1001 DBREF 5NHS A 1 296 UNP D2UAL4 D2UAL4_XANAP 1 296 DBREF 5NHS B 1 296 UNP D2UAL4 D2UAL4_XANAP 1 296 SEQRES 1 A 296 MET THR ASP SER ALA PRO VAL SER PRO VAL PRO ALA ARG SEQRES 2 A 296 ILE LEU ASP GLY ARG ARG ILE ALA GLU ASP LEU LEU ASP SEQRES 3 A 296 GLU LEU LYS THR ARG VAL ASP ALA ARG LEU ALA ALA GLY SEQRES 4 A 296 GLN PRO ARG PRO GLY LEU ALA VAL VAL LEU VAL GLY GLY SEQRES 5 A 296 ASP PRO ALA SER THR VAL TYR VAL ARG ASN LYS ARG ARG SEQRES 6 A 296 ALA ALA GLU LYS VAL GLY ILE GLU ALA PHE ASP TYR ASP SEQRES 7 A 296 LEU PRO ALA GLY THR GLY GLU ALA GLU LEU LEU SER LEU SEQRES 8 A 296 ILE ASP GLN LEU ASN ALA ASP PRO LYS ILE HIS GLY ILE SEQRES 9 A 296 LEU VAL GLN LEU PRO LEU PRO GLY ILE ALA ASP ALA SER SEQRES 10 A 296 ARG LEU ILE HIS ARG ILE ASP PRO ARG LYS ASP VAL ASP SEQRES 11 A 296 GLY PHE HIS PRO GLN ASN VAL GLY HIS LEU ALA LEU ARG SEQRES 12 A 296 GLU PHE GLY LEU ARG PRO CYS THR PRO ARG GLY ILE VAL SEQRES 13 A 296 THR LEU LEU ALA HIS THR ASP GLN PRO VAL ARG GLY ARG SEQRES 14 A 296 ASN ALA THR ILE VAL GLY VAL SER ASN HIS VAL GLY ARG SEQRES 15 A 296 PRO MET ALA LEU GLU LEU LEU ILE ALA GLY CYS THR VAL SEQRES 16 A 296 SER CSO CYS HIS LYS PHE THR PRO ALA ASP VAL LEU GLN SEQRES 17 A 296 THR HIS VAL ARG ASP ALA ASP ILE LEU VAL VAL ALA VAL SEQRES 18 A 296 GLY ARG PRO GLY LEU ILE PRO GLY ASP TRP VAL LYS PRO SEQRES 19 A 296 GLY ALA VAL VAL ILE ASP VAL GLY ILE ASN ARG LEU ASP SEQRES 20 A 296 ASP GLY ARG LEU VAL GLY ASP VAL GLY PHE GLU ALA ALA SEQRES 21 A 296 ALA GLN ARG ALA SER TRP ILE THR PRO VAL PRO GLY GLY SEQRES 22 A 296 VAL GLY PRO MET THR VAL ALA THR LEU MET GLN ASN THR SEQRES 23 A 296 ILE GLU ALA ALA ASP ALA ALA LEU ARG ARG SEQRES 1 B 296 MET THR ASP SER ALA PRO VAL SER PRO VAL PRO ALA ARG SEQRES 2 B 296 ILE LEU ASP GLY ARG ARG ILE ALA GLU ASP LEU LEU ASP SEQRES 3 B 296 GLU LEU LYS THR ARG VAL ASP ALA ARG LEU ALA ALA GLY SEQRES 4 B 296 GLN PRO ARG PRO GLY LEU ALA VAL VAL LEU VAL GLY GLY SEQRES 5 B 296 ASP PRO ALA SER THR VAL TYR VAL ARG ASN LYS ARG ARG SEQRES 6 B 296 ALA ALA GLU LYS VAL GLY ILE GLU ALA PHE ASP TYR ASP SEQRES 7 B 296 LEU PRO ALA GLY THR GLY GLU ALA GLU LEU LEU SER LEU SEQRES 8 B 296 ILE ASP GLN LEU ASN ALA ASP PRO LYS ILE HIS GLY ILE SEQRES 9 B 296 LEU VAL GLN LEU PRO LEU PRO GLY ILE ALA ASP ALA SER SEQRES 10 B 296 ARG LEU ILE HIS ARG ILE ASP PRO ARG LYS ASP VAL ASP SEQRES 11 B 296 GLY PHE HIS PRO GLN ASN VAL GLY HIS LEU ALA LEU ARG SEQRES 12 B 296 GLU PHE GLY LEU ARG PRO CYS THR PRO ARG GLY ILE VAL SEQRES 13 B 296 THR LEU LEU ALA HIS THR ASP GLN PRO VAL ARG GLY ARG SEQRES 14 B 296 ASN ALA THR ILE VAL GLY VAL SER ASN HIS VAL GLY ARG SEQRES 15 B 296 PRO MET ALA LEU GLU LEU LEU ILE ALA GLY CYS THR VAL SEQRES 16 B 296 SER CSO CYS HIS LYS PHE THR PRO ALA ASP VAL LEU GLN SEQRES 17 B 296 THR HIS VAL ARG ASP ALA ASP ILE LEU VAL VAL ALA VAL SEQRES 18 B 296 GLY ARG PRO GLY LEU ILE PRO GLY ASP TRP VAL LYS PRO SEQRES 19 B 296 GLY ALA VAL VAL ILE ASP VAL GLY ILE ASN ARG LEU ASP SEQRES 20 B 296 ASP GLY ARG LEU VAL GLY ASP VAL GLY PHE GLU ALA ALA SEQRES 21 B 296 ALA GLN ARG ALA SER TRP ILE THR PRO VAL PRO GLY GLY SEQRES 22 B 296 VAL GLY PRO MET THR VAL ALA THR LEU MET GLN ASN THR SEQRES 23 B 296 ILE GLU ALA ALA ASP ALA ALA LEU ARG ARG MODRES 5NHS CSO A 197 CYS MODIFIED RESIDUE MODRES 5NHS CSO B 197 CYS MODIFIED RESIDUE HET CSO A 197 7 HET CSO B 197 7 HET EDO B1001 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *292(H2 O) HELIX 1 AA1 GLY A 17 ALA A 38 1 22 HELIX 2 AA2 ASP A 53 GLY A 71 1 19 HELIX 3 AA3 GLY A 84 ASP A 98 1 15 HELIX 4 AA4 ALA A 116 ILE A 123 1 8 HELIX 5 AA5 ASP A 124 ASP A 128 5 5 HELIX 6 AA6 LEU A 142 GLY A 146 5 5 HELIX 7 AA7 ARG A 153 HIS A 161 1 9 HELIX 8 AA8 SER A 177 ALA A 191 1 15 HELIX 9 AA9 PRO A 203 ASP A 213 1 11 HELIX 10 AB1 PRO A 228 VAL A 232 5 5 HELIX 11 AB2 GLY A 256 GLN A 262 1 7 HELIX 12 AB3 GLY A 275 LEU A 294 1 20 HELIX 13 AB4 GLY B 17 ALA B 38 1 22 HELIX 14 AB5 ASP B 53 GLY B 71 1 19 HELIX 15 AB6 GLY B 84 ASP B 98 1 15 HELIX 16 AB7 ALA B 116 ILE B 123 1 8 HELIX 17 AB8 ASP B 124 ASP B 128 5 5 HELIX 18 AB9 LEU B 142 GLY B 146 5 5 HELIX 19 AC1 ARG B 153 HIS B 161 1 9 HELIX 20 AC2 SER B 177 ALA B 191 1 15 HELIX 21 AC3 PRO B 203 ASP B 213 1 11 HELIX 22 AC4 PRO B 228 VAL B 232 5 5 HELIX 23 AC5 GLY B 256 GLN B 262 1 7 HELIX 24 AC6 GLY B 275 LEU B 294 1 20 SHEET 1 AA1 6 ARG A 13 ILE A 14 0 SHEET 2 AA1 6 TRP A 266 ILE A 267 1 O ILE A 267 N ARG A 13 SHEET 3 AA1 6 VAL A 237 ASP A 240 1 N VAL A 238 O TRP A 266 SHEET 4 AA1 6 ILE A 216 ALA A 220 1 N LEU A 217 O ILE A 239 SHEET 5 AA1 6 ASN A 170 GLY A 175 1 N VAL A 174 O ALA A 220 SHEET 6 AA1 6 THR A 194 HIS A 199 1 O CYS A 198 N ILE A 173 SHEET 1 AA2 3 GLU A 73 LEU A 79 0 SHEET 2 AA2 3 GLY A 44 VAL A 50 1 N LEU A 49 O LEU A 79 SHEET 3 AA2 3 GLY A 103 VAL A 106 1 O LEU A 105 N VAL A 48 SHEET 1 AA3 2 ASN A 244 ARG A 245 0 SHEET 2 AA3 2 LEU A 251 VAL A 252 -1 O VAL A 252 N ASN A 244 SHEET 1 AA4 6 ARG B 13 ILE B 14 0 SHEET 2 AA4 6 TRP B 266 ILE B 267 1 O ILE B 267 N ARG B 13 SHEET 3 AA4 6 VAL B 237 ASP B 240 1 N VAL B 238 O TRP B 266 SHEET 4 AA4 6 ILE B 216 ALA B 220 1 N LEU B 217 O ILE B 239 SHEET 5 AA4 6 ASN B 170 GLY B 175 1 N VAL B 174 O ALA B 220 SHEET 6 AA4 6 THR B 194 HIS B 199 1 O THR B 194 N ALA B 171 SHEET 1 AA5 3 GLU B 73 LEU B 79 0 SHEET 2 AA5 3 GLY B 44 VAL B 50 1 N LEU B 45 O PHE B 75 SHEET 3 AA5 3 GLY B 103 VAL B 106 1 O LEU B 105 N VAL B 48 SHEET 1 AA6 2 ASN B 244 ARG B 245 0 SHEET 2 AA6 2 LEU B 251 VAL B 252 -1 O VAL B 252 N ASN B 244 LINK C SER A 196 N CSO A 197 1555 1555 1.32 LINK C CSO A 197 N CYS A 198 1555 1555 1.32 LINK C SER B 196 N CSO B 197 1555 1555 1.33 LINK C CSO B 197 N CYS B 198 1555 1555 1.32 CISPEP 1 LEU A 108 PRO A 109 0 7.83 CISPEP 2 LEU B 108 PRO B 109 0 3.99 SITE 1 AC1 4 LEU A 226 TRP A 231 ARG B 126 HOH B1187 CRYST1 123.295 76.404 66.641 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015006 0.00000