HEADER HYDROLASE 23-MAR-17 5NIA TITLE CRYSTAL STRUCTURE OF HUMAN LTA4H MUTANT D375N IN OPEN CONFORMATION TITLE 2 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE,LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT3MB4 KEYWDS METALLOPEPTIDASE, EPOXIDE HYDROLASE, OPEN CONFORMATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STSIAPANAVA REVDAT 4 17-JAN-24 5NIA 1 REMARK REVDAT 3 13-SEP-17 5NIA 1 JRNL REVDAT 2 06-SEP-17 5NIA 1 JRNL REVDAT 1 23-AUG-17 5NIA 0 JRNL AUTH A.STSIAPANAVA,B.SAMUELSSON,J.Z.HAEGGSTROM JRNL TITL CAPTURING LTA4 HYDROLASE IN ACTION: INSIGHTS TO THE JRNL TITL 2 CHEMISTRY AND DYNAMICS OF CHEMOTACTIC LTB4 SYNTHESIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 9689 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28827365 JRNL DOI 10.1073/PNAS.1710850114 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1811 - 5.0148 1.00 2653 149 0.1665 0.1893 REMARK 3 2 5.0148 - 3.9812 1.00 2685 121 0.1352 0.1457 REMARK 3 3 3.9812 - 3.4782 1.00 2603 190 0.1567 0.1801 REMARK 3 4 3.4782 - 3.1603 1.00 2634 141 0.1755 0.2065 REMARK 3 5 3.1603 - 2.9338 1.00 2628 185 0.1840 0.2202 REMARK 3 6 2.9338 - 2.7609 1.00 2661 146 0.1856 0.2062 REMARK 3 7 2.7609 - 2.6226 1.00 2648 128 0.1813 0.2272 REMARK 3 8 2.6226 - 2.5085 1.00 2653 153 0.1783 0.2211 REMARK 3 9 2.5085 - 2.4119 1.00 2660 125 0.1757 0.2038 REMARK 3 10 2.4119 - 2.3287 1.00 2676 150 0.1861 0.2274 REMARK 3 11 2.3287 - 2.2559 1.00 2646 134 0.1853 0.2209 REMARK 3 12 2.2559 - 2.1914 1.00 2624 169 0.1848 0.2157 REMARK 3 13 2.1914 - 2.1337 1.00 2631 153 0.1897 0.2596 REMARK 3 14 2.1337 - 2.0816 1.00 2644 151 0.2027 0.2464 REMARK 3 15 2.0816 - 2.0343 1.00 2697 124 0.2197 0.2376 REMARK 3 16 2.0343 - 1.9910 1.00 2619 137 0.2160 0.2351 REMARK 3 17 1.9910 - 1.9512 1.00 2664 147 0.2248 0.2329 REMARK 3 18 1.9512 - 1.9144 1.00 2629 143 0.2335 0.2824 REMARK 3 19 1.9144 - 1.8802 1.00 2689 128 0.2458 0.2588 REMARK 3 20 1.8802 - 1.8483 1.00 2688 138 0.2781 0.2980 REMARK 3 21 1.8483 - 1.8185 1.00 2670 136 0.3016 0.3572 REMARK 3 22 1.8185 - 1.7905 1.00 2648 113 0.3234 0.3476 REMARK 3 23 1.7905 - 1.7642 0.96 2618 110 0.3572 0.3973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5089 REMARK 3 ANGLE : 1.229 6925 REMARK 3 CHIRALITY : 0.068 773 REMARK 3 PLANARITY : 0.010 884 REMARK 3 DIHEDRAL : 16.714 1887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 1:208 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0465 8.2630 -25.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2860 REMARK 3 T33: 0.2220 T12: -0.0261 REMARK 3 T13: -0.0077 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.9023 L22: 1.4730 REMARK 3 L33: 0.1907 L12: 0.6080 REMARK 3 L13: -0.4888 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: 0.2282 S13: -0.2317 REMARK 3 S21: -0.1432 S22: 0.1258 S23: -0.0296 REMARK 3 S31: 0.0564 S32: -0.1830 S33: 0.0185 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 209:465 OR (RESI 900 AND RESNAME REMARK 3 ZN) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8608 26.6673 -10.2289 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2295 REMARK 3 T33: 0.2836 T12: -0.0337 REMARK 3 T13: -0.0260 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.0914 L22: 0.5656 REMARK 3 L33: 0.3291 L12: 0.5194 REMARK 3 L13: -0.4090 L23: -0.3086 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: -0.0440 S13: -0.0059 REMARK 3 S21: 0.1284 S22: -0.1474 S23: -0.1013 REMARK 3 S31: -0.1268 S32: 0.0228 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 466:609 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2256 18.7377 15.3466 REMARK 3 T TENSOR REMARK 3 T11: 0.7085 T22: 0.4854 REMARK 3 T33: 0.4721 T12: -0.1873 REMARK 3 T13: -0.1998 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.5891 L22: 0.1421 REMARK 3 L33: 0.6671 L12: -0.1866 REMARK 3 L13: 0.1745 L23: -0.2035 REMARK 3 S TENSOR REMARK 3 S11: 0.5362 S12: -0.3746 S13: -0.6486 REMARK 3 S21: 0.6078 S22: -0.2214 S23: -0.1626 REMARK 3 S31: 0.1971 S32: 0.1814 S33: 0.2528 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.764 REMARK 200 RESOLUTION RANGE LOW (A) : 44.167 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10430 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.78500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (W/V) PEG 20 000, 15% (W/V) PEG MME REMARK 280 550, 100 MM HEPES/MOPS PH 7.7-8.0, 15 MM CACL2, 15 MM MGCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.16730 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.96000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.50000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.16730 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.96000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.50000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.16730 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.96000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.33459 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.92000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.33459 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.92000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.33459 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 610 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 78.18 -115.65 REMARK 500 SER A 80 -120.75 34.64 REMARK 500 ASP A 183 107.18 -167.07 REMARK 500 GLU A 271 46.66 -78.06 REMARK 500 CYS A 274 -3.03 75.31 REMARK 500 LEU A 275 79.31 -155.17 REMARK 500 GLU A 358 1.06 -66.08 REMARK 500 TYR A 378 2.46 -62.40 REMARK 500 SER A 380 161.57 176.11 REMARK 500 PRO A 382 5.31 -50.38 REMARK 500 PHE A 486 150.06 -49.85 REMARK 500 ASN A 531 118.89 -38.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 1164 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 900 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 93.5 REMARK 620 3 GLU A 318 OE1 84.8 98.3 REMARK 620 4 GLU A 318 OE1 100.6 91.5 16.8 REMARK 620 5 GLU A 318 OE2 146.7 97.6 62.6 48.0 REMARK 620 6 HOH A1011 O 164.6 99.5 101.2 87.3 39.3 REMARK 620 7 HOH A1122 O 94.7 91.5 170.2 164.1 116.2 76.9 REMARK 620 8 HOH A1162 O 94.0 168.9 90.5 95.1 80.5 72.0 79.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MS6 RELATED DB: PDB REMARK 900 RELATED ID: 4DPR RELATED DB: PDB REMARK 900 RELATED ID: 5NI2 RELATED DB: PDB REMARK 900 RELATED ID: 5NI4 RELATED DB: PDB REMARK 900 RELATED ID: 5NI6 RELATED DB: PDB DBREF 5NIA A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQADV 5NIA MET A -6 UNP P09960 INITIATING METHIONINE SEQADV 5NIA HIS A -5 UNP P09960 EXPRESSION TAG SEQADV 5NIA HIS A -4 UNP P09960 EXPRESSION TAG SEQADV 5NIA HIS A -3 UNP P09960 EXPRESSION TAG SEQADV 5NIA HIS A -2 UNP P09960 EXPRESSION TAG SEQADV 5NIA HIS A -1 UNP P09960 EXPRESSION TAG SEQADV 5NIA HIS A 0 UNP P09960 EXPRESSION TAG SEQADV 5NIA ASN A 375 UNP P09960 ASP 376 ENGINEERED MUTATION SEQRES 1 A 617 MET HIS HIS HIS HIS HIS HIS PRO GLU ILE VAL ASP THR SEQRES 2 A 617 CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR LYS SEQRES 3 A 617 HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG ARG SEQRES 4 A 617 THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER GLN SEQRES 5 A 617 GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS ASP SEQRES 6 A 617 LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU VAL SEQRES 7 A 617 LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SER SEQRES 8 A 617 PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS ASN SEQRES 9 A 617 GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER PRO SEQRES 10 A 617 LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN THR SEQRES 11 A 617 SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS GLN SEQRES 12 A 617 ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP THR SEQRES 13 A 617 PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER VAL SEQRES 14 A 617 PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG ASP SEQRES 15 A 617 GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS ILE SEQRES 16 A 617 TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR LEU SEQRES 17 A 617 ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN ILE SEQRES 18 A 617 GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN VAL SEQRES 19 A 617 GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER MET SEQRES 20 A 617 LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL TRP SEQRES 21 A 617 GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE PRO SEQRES 22 A 617 TYR GLY GLY MET GLU ASN PRO CYS LEU THR PHE VAL THR SEQRES 23 A 617 PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN VAL SEQRES 24 A 617 ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN LEU SEQRES 25 A 617 VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN GLU SEQRES 26 A 617 GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY ARG SEQRES 27 A 617 LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU GLY SEQRES 28 A 617 GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE GLY SEQRES 29 A 617 GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU THR SEQRES 30 A 617 ASP ILE ASP PRO ASN VAL ALA TYR SER SER VAL PRO TYR SEQRES 31 A 617 GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN LEU SEQRES 32 A 617 LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS ALA SEQRES 33 A 617 TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR ASP SEQRES 34 A 617 ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP LYS SEQRES 35 A 617 VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP LEU SEQRES 36 A 617 TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR ASP SEQRES 37 A 617 MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN ARG SEQRES 38 A 617 TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE ASN SEQRES 39 A 617 ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU ASN SEQRES 40 A 617 GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU PRO SEQRES 41 A 617 LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN PHE SEQRES 42 A 617 ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP LEU SEQRES 43 A 617 ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE PRO SEQRES 44 A 617 LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET LYS SEQRES 45 A 617 PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE ASP SEQRES 46 A 617 LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU HIS SEQRES 47 A 617 LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL GLY SEQRES 48 A 617 LYS ASP LEU LYS VAL ASP HET ZN A 900 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *351(H2 O) HELIX 1 AA1 GLN A 79 GLY A 83 5 5 HELIX 2 AA2 THR A 119 THR A 123 5 5 HELIX 3 AA3 HIS A 139 ILE A 143 5 5 HELIX 4 AA4 TYR A 200 ILE A 202 5 3 HELIX 5 AA5 GLU A 223 PHE A 234 1 12 HELIX 6 AA6 GLU A 236 GLY A 249 1 14 HELIX 7 AA7 THR A 279 LEU A 283 5 5 HELIX 8 AA8 LEU A 289 VAL A 292 5 4 HELIX 9 AA9 ILE A 293 SER A 300 1 8 HELIX 10 AB1 THR A 310 ASP A 312 5 3 HELIX 11 AB2 HIS A 313 GLY A 334 1 22 HELIX 12 AB3 GLY A 334 GLY A 357 1 24 HELIX 13 AB4 HIS A 360 LYS A 364 5 5 HELIX 14 AB5 ASP A 373 TYR A 378 1 6 HELIX 15 AB6 PRO A 382 LEU A 397 1 16 HELIX 16 AB7 GLY A 399 SER A 415 1 17 HELIX 17 AB8 THR A 420 PHE A 432 1 13 HELIX 18 AB9 LYS A 435 ASN A 440 1 6 HELIX 19 AC1 ASP A 443 SER A 450 1 8 HELIX 20 AC2 MET A 462 THR A 477 1 16 HELIX 21 AC3 LYS A 479 SER A 485 5 7 HELIX 22 AC4 ASN A 487 LYS A 492 5 6 HELIX 23 AC5 SER A 495 ARG A 509 1 15 HELIX 24 AC6 PRO A 513 ASN A 525 1 13 HELIX 25 AC7 PHE A 526 ILE A 529 5 4 HELIX 26 AC8 ASN A 531 SER A 545 1 15 HELIX 27 AC9 ASP A 549 GLN A 561 1 13 HELIX 28 AD1 ARG A 563 PHE A 577 1 15 HELIX 29 AD2 PHE A 577 LYS A 592 1 16 HELIX 30 AD3 ALA A 593 MET A 595 5 3 HELIX 31 AD4 HIS A 596 LYS A 608 1 13 SHEET 1 AA1 8 GLN A 69 GLU A 70 0 SHEET 2 AA1 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 AA1 8 GLU A 99 THR A 108 -1 O GLU A 103 N VAL A 65 SHEET 4 AA1 8 THR A 33 SER A 44 -1 N LEU A 40 O ILE A 102 SHEET 5 AA1 8 CYS A 16 ASP A 28 -1 N ARG A 17 O GLN A 43 SHEET 6 AA1 8 LYS A 153 PRO A 163 1 O SER A 161 N CYS A 25 SHEET 7 AA1 8 ARG A 186 PRO A 198 -1 O GLN A 193 N TYR A 156 SHEET 8 AA1 8 ILE A 173 PRO A 179 -1 N THR A 178 O ILE A 188 SHEET 1 AA2 3 LEU A 49 THR A 56 0 SHEET 2 AA2 3 SER A 84 LEU A 94 -1 O LEU A 94 N LEU A 49 SHEET 3 AA2 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 AA3 4 LEU A 115 LEU A 118 0 SHEET 2 AA3 4 TYR A 130 SER A 133 -1 O PHE A 132 N GLN A 116 SHEET 3 AA3 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 AA3 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 AA4 4 GLU A 210 GLY A 215 0 SHEET 2 AA4 4 THR A 218 SER A 222 -1 O SER A 222 N GLU A 210 SHEET 3 AA4 4 ASP A 257 VAL A 260 1 O LEU A 258 N TRP A 221 SHEET 4 AA4 4 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 1 AA5 2 VAL A 306 ASN A 308 0 SHEET 2 AA5 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK NE2 HIS A 295 ZN ZN A 900 1555 1555 2.10 LINK NE2 HIS A 299 ZN ZN A 900 1555 1555 2.07 LINK OE1AGLU A 318 ZN ZN A 900 1555 1555 2.13 LINK OE1BGLU A 318 ZN ZN A 900 1555 1555 2.15 LINK OE2AGLU A 318 ZN ZN A 900 1555 1555 2.11 LINK ZN ZN A 900 O BHOH A1011 1555 1555 2.35 LINK ZN ZN A 900 O HOH A1122 1555 1555 2.19 LINK ZN ZN A 900 O HOH A1162 1555 1555 2.16 CISPEP 1 GLN A 136 ALA A 137 0 -5.53 CISPEP 2 ALA A 510 PRO A 511 0 3.06 SITE 1 AC1 6 HIS A 295 HIS A 299 GLU A 318 HOH A1011 SITE 2 AC1 6 HOH A1122 HOH A1162 CRYST1 153.000 153.000 74.880 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006536 0.003774 0.000000 0.00000 SCALE2 0.000000 0.007547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013355 0.00000