data_5NIO # _entry.id 5NIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NIO WWPDB D_1200004197 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NIO _pdbx_database_status.recvd_initial_deposition_date 2017-03-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pohl, E.' 1 0000-0002-9949-4471 'Tatum, N.J.' 2 ? 'Cole, J.C.' 3 0000-0002-0291-6317 'Baulard, A.R.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Org. Biomol. Chem.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1477-0539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 10245 _citation.page_last 10255 _citation.title 'New active leads for tuberculosis booster drugs by structure-based drug discovery.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c7ob00910k _citation.pdbx_database_id_PubMed 29182187 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tatum, N.J.' 1 primary 'Liebeschuetz, J.W.' 2 primary 'Cole, J.C.' 3 primary 'Frita, R.' 4 primary 'Herledan, A.' 5 primary 'Baulard, A.R.' 6 primary 'Willand, N.' 7 primary 'Pohl, E.' 8 # _cell.entry_id 5NIO _cell.length_a 120.083 _cell.length_b 120.083 _cell.length_c 33.659 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIO _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HTH-type transcriptional regulator EthR' 23781.705 1 ? ? ? ? 2 non-polymer syn '~{N}-butyl-4-methyl-piperidine-1-carboxamide' 198.305 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVV NQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG AAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _entity_poly.pdbx_seq_one_letter_code_can ;MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVV NQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG AAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 THR n 1 4 SER n 1 5 ALA n 1 6 ALA n 1 7 SER n 1 8 GLN n 1 9 ALA n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 ARG n 1 14 GLY n 1 15 ARG n 1 16 ARG n 1 17 THR n 1 18 ALA n 1 19 ARG n 1 20 PRO n 1 21 SER n 1 22 GLY n 1 23 ASP n 1 24 ASP n 1 25 ARG n 1 26 GLU n 1 27 LEU n 1 28 ALA n 1 29 ILE n 1 30 LEU n 1 31 ALA n 1 32 THR n 1 33 ALA n 1 34 GLU n 1 35 ASN n 1 36 LEU n 1 37 LEU n 1 38 GLU n 1 39 ASP n 1 40 ARG n 1 41 PRO n 1 42 LEU n 1 43 ALA n 1 44 ASP n 1 45 ILE n 1 46 SER n 1 47 VAL n 1 48 ASP n 1 49 ASP n 1 50 LEU n 1 51 ALA n 1 52 LYS n 1 53 GLY n 1 54 ALA n 1 55 GLY n 1 56 ILE n 1 57 SER n 1 58 ARG n 1 59 PRO n 1 60 THR n 1 61 PHE n 1 62 TYR n 1 63 PHE n 1 64 TYR n 1 65 PHE n 1 66 PRO n 1 67 SER n 1 68 LYS n 1 69 GLU n 1 70 ALA n 1 71 VAL n 1 72 LEU n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 LEU n 1 77 ASP n 1 78 ARG n 1 79 VAL n 1 80 VAL n 1 81 ASN n 1 82 GLN n 1 83 ALA n 1 84 ASP n 1 85 MET n 1 86 ALA n 1 87 LEU n 1 88 GLN n 1 89 THR n 1 90 LEU n 1 91 ALA n 1 92 GLU n 1 93 ASN n 1 94 PRO n 1 95 ALA n 1 96 ASP n 1 97 THR n 1 98 ASP n 1 99 ARG n 1 100 GLU n 1 101 ASN n 1 102 MET n 1 103 TRP n 1 104 ARG n 1 105 THR n 1 106 GLY n 1 107 ILE n 1 108 ASN n 1 109 VAL n 1 110 PHE n 1 111 PHE n 1 112 GLU n 1 113 THR n 1 114 PHE n 1 115 GLY n 1 116 SER n 1 117 HIS n 1 118 LYS n 1 119 ALA n 1 120 VAL n 1 121 THR n 1 122 ARG n 1 123 ALA n 1 124 GLY n 1 125 GLN n 1 126 ALA n 1 127 ALA n 1 128 ARG n 1 129 ALA n 1 130 THR n 1 131 SER n 1 132 VAL n 1 133 GLU n 1 134 VAL n 1 135 ALA n 1 136 GLU n 1 137 LEU n 1 138 TRP n 1 139 SER n 1 140 THR n 1 141 PHE n 1 142 MET n 1 143 GLN n 1 144 LYS n 1 145 TRP n 1 146 ILE n 1 147 ALA n 1 148 TYR n 1 149 THR n 1 150 ALA n 1 151 ALA n 1 152 VAL n 1 153 ILE n 1 154 ASP n 1 155 ALA n 1 156 GLU n 1 157 ARG n 1 158 ASP n 1 159 ARG n 1 160 GLY n 1 161 ALA n 1 162 ALA n 1 163 PRO n 1 164 ARG n 1 165 THR n 1 166 LEU n 1 167 PRO n 1 168 ALA n 1 169 HIS n 1 170 GLU n 1 171 LEU n 1 172 ALA n 1 173 THR n 1 174 ALA n 1 175 LEU n 1 176 ASN n 1 177 LEU n 1 178 MET n 1 179 ASN n 1 180 GLU n 1 181 ARG n 1 182 THR n 1 183 LEU n 1 184 PHE n 1 185 ALA n 1 186 SER n 1 187 PHE n 1 188 ALA n 1 189 GLY n 1 190 GLU n 1 191 GLN n 1 192 PRO n 1 193 SER n 1 194 VAL n 1 195 PRO n 1 196 GLU n 1 197 ALA n 1 198 ARG n 1 199 VAL n 1 200 LEU n 1 201 ASP n 1 202 THR n 1 203 LEU n 1 204 VAL n 1 205 HIS n 1 206 ILE n 1 207 TRP n 1 208 VAL n 1 209 THR n 1 210 SER n 1 211 ILE n 1 212 TYR n 1 213 GLY n 1 214 GLU n 1 215 ASN n 1 216 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 216 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ethR, etaR, Rv3855' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ETHR_MYCTU _struct_ref.pdbx_db_accession P9WMC1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVV NQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG AAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NIO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P9WMC1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 216 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8YH non-polymer . '~{N}-butyl-4-methyl-piperidine-1-carboxamide' ? 'C11 H22 N2 O' 198.305 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NIO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MES buffer, 1.4-1.6 M AS' _exptl_crystal_grow.pdbx_pH_range 6-7 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-03-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator DCM _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9174 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9174 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NIO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 84.91 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 48919 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.4 _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.5 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 16586 _reflns_shell.percent_possible_all 96.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5NIO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 46522 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 84.91 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.18214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18096 _refine.ls_R_factor_R_free 0.20498 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 2397 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 26.107 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.054 _refine.pdbx_overall_ESU_R_Free 0.056 _refine.overall_SU_ML 0.037 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.935 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1496 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1635 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 84.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.020 ? 1640 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1557 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.682 1.949 ? 2257 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.879 3.003 ? 3575 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.253 5.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.521 23.974 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.358 15.000 ? 260 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.374 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 260 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 1906 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 392 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.784 2.367 ? 805 'X-RAY DIFFRACTION' ? r_mcbond_other 2.778 2.365 ? 804 'X-RAY DIFFRACTION' ? r_mcangle_it 3.799 3.540 ? 1013 'X-RAY DIFFRACTION' ? r_mcangle_other 3.798 3.542 ? 1014 'X-RAY DIFFRACTION' ? r_scbond_it 4.230 2.706 ? 835 'X-RAY DIFFRACTION' ? r_scbond_other 4.230 2.696 ? 832 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 6.012 3.898 ? 1227 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.040 19.477 ? 2004 'X-RAY DIFFRACTION' ? r_long_range_B_other 6.992 19.108 ? 1953 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.401 _refine_ls_shell.d_res_low 1.437 _refine_ls_shell.number_reflns_R_work 3294 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 98.15 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 157 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5NIO _struct.title 'EthR complex' _struct.pdbx_descriptor 'HTH-type transcriptional regulator EthR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NIO _struct_keywords.text 'TetR repressor, DNA binding protein, protein ligand complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 22 ? GLU A 38 ? GLY A 22 GLU A 38 1 ? 17 HELX_P HELX_P2 AA2 PRO A 41 ? ILE A 45 ? PRO A 41 ILE A 45 5 ? 5 HELX_P HELX_P3 AA3 SER A 46 ? GLY A 55 ? SER A 46 GLY A 55 1 ? 10 HELX_P HELX_P4 AA4 SER A 57 ? PHE A 65 ? SER A 57 PHE A 65 1 ? 9 HELX_P HELX_P5 AA5 SER A 67 ? ASN A 93 ? SER A 67 ASN A 93 1 ? 27 HELX_P HELX_P6 AA6 ASP A 98 ? SER A 116 ? ASP A 98 SER A 116 1 ? 19 HELX_P HELX_P7 AA7 HIS A 117 ? ALA A 127 ? HIS A 117 ALA A 127 1 ? 11 HELX_P HELX_P8 AA8 ARG A 128 ? THR A 130 ? ARG A 128 THR A 130 5 ? 3 HELX_P HELX_P9 AA9 SER A 131 ? ARG A 159 ? SER A 131 ARG A 159 1 ? 29 HELX_P HELX_P10 AB1 PRO A 167 ? GLY A 189 ? PRO A 167 GLY A 189 1 ? 23 HELX_P HELX_P11 AB2 PRO A 195 ? GLY A 213 ? PRO A 195 GLY A 213 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 191 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 191 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 192 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 192 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 14.67 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 8YH 301 ? 7 'binding site for residue 8YH A 301' AC2 Software A SO4 302 ? 4 'binding site for residue SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 106 ? GLY A 106 . ? 1_555 ? 2 AC1 7 ILE A 107 ? ILE A 107 . ? 1_555 ? 3 AC1 7 PHE A 110 ? PHE A 110 . ? 1_555 ? 4 AC1 7 THR A 149 ? THR A 149 . ? 1_555 ? 5 AC1 7 ASN A 176 ? ASN A 176 . ? 1_555 ? 6 AC1 7 ASN A 179 ? ASN A 179 . ? 1_555 ? 7 AC1 7 TRP A 207 ? TRP A 207 . ? 1_555 ? 8 AC2 4 SER A 46 ? SER A 46 . ? 1_555 ? 9 AC2 4 VAL A 47 ? VAL A 47 . ? 1_555 ? 10 AC2 4 ASP A 48 ? ASP A 48 . ? 1_555 ? 11 AC2 4 ARG A 58 ? ARG A 58 . ? 1_555 ? # _atom_sites.entry_id 5NIO _atom_sites.fract_transf_matrix[1][1] 0.008328 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008328 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029710 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 ALA 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 SER 7 7 ? ? ? A . n A 1 8 GLN 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 SER 10 10 ? ? ? A . n A 1 11 LEU 11 11 ? ? ? A . n A 1 12 PRO 12 12 ? ? ? A . n A 1 13 ARG 13 13 ? ? ? A . n A 1 14 GLY 14 14 ? ? ? A . n A 1 15 ARG 15 15 ? ? ? A . n A 1 16 ARG 16 16 ? ? ? A . n A 1 17 THR 17 17 ? ? ? A . n A 1 18 ALA 18 18 ? ? ? A . n A 1 19 ARG 19 19 ? ? ? A . n A 1 20 PRO 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ASP 23 23 23 ASP ALA A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ASP 96 96 96 ASP ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 TRP 103 103 103 TRP TRP A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 TRP 138 138 138 TRP TRP A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 MET 142 142 142 MET MET A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 HIS 169 169 169 HIS HIS A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 MET 178 178 178 MET MET A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 ARG 181 181 181 ARG ARG A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 PHE 187 187 187 PHE PHE A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 GLN 191 191 191 GLN GLN A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 ALA 197 197 197 ALA ALA A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 ASP 201 201 201 ASP ASP A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 HIS 205 205 205 HIS HIS A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 GLU 214 214 214 GLU GLU A . n A 1 215 ASN 215 215 ? ? ? A . n A 1 216 ARG 216 216 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8YH 1 301 1 8YH LIG A . C 3 SO4 1 302 1 SO4 SO4 A . D 4 HOH 1 401 75 HOH HOH A . D 4 HOH 2 402 22 HOH HOH A . D 4 HOH 3 403 50 HOH HOH A . D 4 HOH 4 404 39 HOH HOH A . D 4 HOH 5 405 80 HOH HOH A . D 4 HOH 6 406 4 HOH HOH A . D 4 HOH 7 407 89 HOH HOH A . D 4 HOH 8 408 72 HOH HOH A . D 4 HOH 9 409 110 HOH HOH A . D 4 HOH 10 410 58 HOH HOH A . D 4 HOH 11 411 90 HOH HOH A . D 4 HOH 12 412 93 HOH HOH A . D 4 HOH 13 413 64 HOH HOH A . D 4 HOH 14 414 2 HOH HOH A . D 4 HOH 15 415 42 HOH HOH A . D 4 HOH 16 416 9 HOH HOH A . D 4 HOH 17 417 74 HOH HOH A . D 4 HOH 18 418 6 HOH HOH A . D 4 HOH 19 419 55 HOH HOH A . D 4 HOH 20 420 95 HOH HOH A . D 4 HOH 21 421 5 HOH HOH A . D 4 HOH 22 422 103 HOH HOH A . D 4 HOH 23 423 15 HOH HOH A . D 4 HOH 24 424 23 HOH HOH A . D 4 HOH 25 425 18 HOH HOH A . D 4 HOH 26 426 78 HOH HOH A . D 4 HOH 27 427 57 HOH HOH A . D 4 HOH 28 428 38 HOH HOH A . D 4 HOH 29 429 71 HOH HOH A . D 4 HOH 30 430 21 HOH HOH A . D 4 HOH 31 431 47 HOH HOH A . D 4 HOH 32 432 96 HOH HOH A . D 4 HOH 33 433 14 HOH HOH A . D 4 HOH 34 434 1 HOH HOH A . D 4 HOH 35 435 27 HOH HOH A . D 4 HOH 36 436 60 HOH HOH A . D 4 HOH 37 437 117 HOH HOH A . D 4 HOH 38 438 8 HOH HOH A . D 4 HOH 39 439 43 HOH HOH A . D 4 HOH 40 440 111 HOH HOH A . D 4 HOH 41 441 48 HOH HOH A . D 4 HOH 42 442 46 HOH HOH A . D 4 HOH 43 443 85 HOH HOH A . D 4 HOH 44 444 65 HOH HOH A . D 4 HOH 45 445 107 HOH HOH A . D 4 HOH 46 446 83 HOH HOH A . D 4 HOH 47 447 45 HOH HOH A . D 4 HOH 48 448 7 HOH HOH A . D 4 HOH 49 449 69 HOH HOH A . D 4 HOH 50 450 92 HOH HOH A . D 4 HOH 51 451 81 HOH HOH A . D 4 HOH 52 452 41 HOH HOH A . D 4 HOH 53 453 3 HOH HOH A . D 4 HOH 54 454 97 HOH HOH A . D 4 HOH 55 455 82 HOH HOH A . D 4 HOH 56 456 37 HOH HOH A . D 4 HOH 57 457 19 HOH HOH A . D 4 HOH 58 458 87 HOH HOH A . D 4 HOH 59 459 119 HOH HOH A . D 4 HOH 60 460 56 HOH HOH A . D 4 HOH 61 461 31 HOH HOH A . D 4 HOH 62 462 10 HOH HOH A . D 4 HOH 63 463 11 HOH HOH A . D 4 HOH 64 464 77 HOH HOH A . D 4 HOH 65 465 67 HOH HOH A . D 4 HOH 66 466 16 HOH HOH A . D 4 HOH 67 467 100 HOH HOH A . D 4 HOH 68 468 108 HOH HOH A . D 4 HOH 69 469 115 HOH HOH A . D 4 HOH 70 470 105 HOH HOH A . D 4 HOH 71 471 13 HOH HOH A . D 4 HOH 72 472 32 HOH HOH A . D 4 HOH 73 473 88 HOH HOH A . D 4 HOH 74 474 118 HOH HOH A . D 4 HOH 75 475 104 HOH HOH A . D 4 HOH 76 476 113 HOH HOH A . D 4 HOH 77 477 59 HOH HOH A . D 4 HOH 78 478 52 HOH HOH A . D 4 HOH 79 479 70 HOH HOH A . D 4 HOH 80 480 99 HOH HOH A . D 4 HOH 81 481 84 HOH HOH A . D 4 HOH 82 482 79 HOH HOH A . D 4 HOH 83 483 54 HOH HOH A . D 4 HOH 84 484 44 HOH HOH A . D 4 HOH 85 485 53 HOH HOH A . D 4 HOH 86 486 30 HOH HOH A . D 4 HOH 87 487 112 HOH HOH A . D 4 HOH 88 488 109 HOH HOH A . D 4 HOH 89 489 20 HOH HOH A . D 4 HOH 90 490 17 HOH HOH A . D 4 HOH 91 491 114 HOH HOH A . D 4 HOH 92 492 25 HOH HOH A . D 4 HOH 93 493 40 HOH HOH A . D 4 HOH 94 494 12 HOH HOH A . D 4 HOH 95 495 68 HOH HOH A . D 4 HOH 96 496 73 HOH HOH A . D 4 HOH 97 497 120 HOH HOH A . D 4 HOH 98 498 76 HOH HOH A . D 4 HOH 99 499 24 HOH HOH A . D 4 HOH 100 500 91 HOH HOH A . D 4 HOH 101 501 66 HOH HOH A . D 4 HOH 102 502 86 HOH HOH A . D 4 HOH 103 503 33 HOH HOH A . D 4 HOH 104 504 49 HOH HOH A . D 4 HOH 105 505 116 HOH HOH A . D 4 HOH 106 506 62 HOH HOH A . D 4 HOH 107 507 29 HOH HOH A . D 4 HOH 108 508 61 HOH HOH A . D 4 HOH 109 509 94 HOH HOH A . D 4 HOH 110 510 35 HOH HOH A . D 4 HOH 111 511 26 HOH HOH A . D 4 HOH 112 512 51 HOH HOH A . D 4 HOH 113 513 106 HOH HOH A . D 4 HOH 114 514 36 HOH HOH A . D 4 HOH 115 515 102 HOH HOH A . D 4 HOH 116 516 28 HOH HOH A . D 4 HOH 117 517 34 HOH HOH A . D 4 HOH 118 518 63 HOH HOH A . D 4 HOH 119 519 98 HOH HOH A . D 4 HOH 120 520 101 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3160 ? 1 MORE -48 ? 1 'SSA (A^2)' 17220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 416 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-15 2 'Structure model' 1 1 2017-12-06 3 'Structure model' 1 2 2017-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 181 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 401 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.87 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 461 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 487 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 1.87 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 165 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.60 _pdbx_validate_torsion.psi -107.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 23 ? CG ? A ASP 23 CG 2 1 Y 1 A ASP 23 ? OD1 ? A ASP 23 OD1 3 1 Y 1 A ASP 23 ? OD2 ? A ASP 23 OD2 4 1 Y 1 A ASP 96 ? CG ? A ASP 96 CG 5 1 Y 1 A ASP 96 ? OD1 ? A ASP 96 OD1 6 1 Y 1 A ASP 96 ? OD2 ? A ASP 96 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A ALA 5 ? A ALA 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A SER 7 ? A SER 7 8 1 Y 1 A GLN 8 ? A GLN 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A SER 10 ? A SER 10 11 1 Y 1 A LEU 11 ? A LEU 11 12 1 Y 1 A PRO 12 ? A PRO 12 13 1 Y 1 A ARG 13 ? A ARG 13 14 1 Y 1 A GLY 14 ? A GLY 14 15 1 Y 1 A ARG 15 ? A ARG 15 16 1 Y 1 A ARG 16 ? A ARG 16 17 1 Y 1 A THR 17 ? A THR 17 18 1 Y 1 A ALA 18 ? A ALA 18 19 1 Y 1 A ARG 19 ? A ARG 19 20 1 Y 1 A PRO 20 ? A PRO 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A ASN 215 ? A ASN 215 23 1 Y 1 A ARG 216 ? A ARG 216 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '~{N}-butyl-4-methyl-piperidine-1-carboxamide' 8YH 3 'SULFATE ION' SO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #