HEADER ENDOCYTOSIS 29-MAR-17 5NJJ TITLE PTB DOMAIN OF HUMAN NUMB ISOFORM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NUMB HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: H-NUMB,PROTEIN S171; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALA-TYR-ILE-GLY-PRO-PTR-LEU; COMPND 8 CHAIN: E, F, G, H; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: TYR AT POSITION 6 IS PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUMB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PTB DOMAIN, NUMB, BREAST CANCER, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.MAPELLI,P.P.DI FIORE REVDAT 5 09-OCT-24 5NJJ 1 REMARK REVDAT 4 17-JAN-24 5NJJ 1 REMARK REVDAT 3 21-FEB-18 5NJJ 1 JRNL REVDAT 2 03-JAN-18 5NJJ 1 JRNL REVDAT 1 13-DEC-17 5NJJ 0 JRNL AUTH I.N.COLALUCA,A.BASILE,L.FREIBURGER,V.D'UVA,D.DISALVATORE, JRNL AUTH 2 M.VECCHI,S.CONFALONIERI,D.TOSONI,V.CECATIELLO,M.G.MALABARBA, JRNL AUTH 3 C.J.YANG,M.KAINOSHO,M.SATTLER,M.MAPELLI,S.PECE,P.P.DI FIORE JRNL TITL A NUMB-MDM2 FUZZY COMPLEX REVEALS AN ISOFORM-SPECIFIC JRNL TITL 2 INVOLVEMENT OF NUMB IN BREAST CANCER. JRNL REF J. CELL BIOL. V. 217 745 2018 JRNL REFN ESSN 1540-8140 JRNL PMID 29269425 JRNL DOI 10.1083/JCB.201709092 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5776 - 5.3960 1.00 2810 132 0.2449 0.2869 REMARK 3 2 5.3960 - 4.2846 1.00 2700 140 0.2415 0.2682 REMARK 3 3 4.2846 - 3.7435 1.00 2697 127 0.2523 0.3009 REMARK 3 4 3.7435 - 3.4014 1.00 2649 150 0.2856 0.3006 REMARK 3 5 3.4014 - 3.1577 1.00 2635 158 0.3120 0.3615 REMARK 3 6 3.1577 - 2.9716 0.99 2653 112 0.3358 0.3233 REMARK 3 7 2.9716 - 2.8229 0.99 2645 127 0.3426 0.3742 REMARK 3 8 2.8229 - 2.7000 0.99 2617 114 0.3624 0.4435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4820 REMARK 3 ANGLE : 1.872 6463 REMARK 3 CHIRALITY : 0.078 688 REMARK 3 PLANARITY : 0.011 818 REMARK 3 DIHEDRAL : 15.016 1777 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -50.2885 -23.6560 29.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.6393 T22: 0.7547 REMARK 3 T33: 0.7688 T12: 0.0905 REMARK 3 T13: -0.0918 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 0.3679 L22: 0.6709 REMARK 3 L33: -0.0377 L12: 0.4411 REMARK 3 L13: -0.6391 L23: 0.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.4668 S13: -0.0159 REMARK 3 S21: -0.4074 S22: -0.1034 S23: -0.0626 REMARK 3 S31: 0.0260 S32: 0.0991 S33: 0.0992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.09660 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350, 0.2 M LITHIUM SULFATE, REMARK 280 AND 0.1 M BIS-TRIS PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.22000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 118.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 118.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.22000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.22000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 118.72000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 118.72000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 118.72000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.72000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 118.72000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.22000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.22000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 60.22000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 60.22000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 PRO A 22 REMARK 465 HIS A 23 REMARK 465 GLN A 24 REMARK 465 TRP A 25 REMARK 465 GLN A 26 REMARK 465 GLN A 170 REMARK 465 LYS A 171 REMARK 465 ARG A 172 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 GLU A 175 REMARK 465 SER B 20 REMARK 465 ARG B 21 REMARK 465 PRO B 22 REMARK 465 HIS B 23 REMARK 465 GLN B 24 REMARK 465 TRP B 25 REMARK 465 GLN B 26 REMARK 465 THR B 79 REMARK 465 GLY B 80 REMARK 465 LYS B 81 REMARK 465 LYS B 169 REMARK 465 GLN B 170 REMARK 465 LYS B 171 REMARK 465 ARG B 172 REMARK 465 GLU B 173 REMARK 465 LYS B 174 REMARK 465 GLU B 175 REMARK 465 SER C 20 REMARK 465 ARG C 21 REMARK 465 PRO C 22 REMARK 465 HIS C 23 REMARK 465 GLN C 24 REMARK 465 TRP C 25 REMARK 465 GLN C 26 REMARK 465 THR C 27 REMARK 465 LYS C 169 REMARK 465 GLN C 170 REMARK 465 LYS C 171 REMARK 465 ARG C 172 REMARK 465 GLU C 173 REMARK 465 LYS C 174 REMARK 465 GLU C 175 REMARK 465 SER D 20 REMARK 465 ARG D 21 REMARK 465 PRO D 22 REMARK 465 HIS D 23 REMARK 465 GLN D 24 REMARK 465 TRP D 25 REMARK 465 GLN D 26 REMARK 465 THR D 27 REMARK 465 LYS D 171 REMARK 465 ARG D 172 REMARK 465 GLU D 173 REMARK 465 LYS D 174 REMARK 465 GLU D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 68 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 GLU B 68 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 GLU C 68 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 GLU D 68 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 19.47 57.44 REMARK 500 PHE B 75 -3.66 -164.31 REMARK 500 LYS C 81 59.91 -105.17 REMARK 500 LYS C 103 18.81 58.50 REMARK 500 PHE D 75 -55.03 -24.17 REMARK 500 ALA D 83 144.59 -28.23 REMARK 500 LYS D 103 19.73 58.94 REMARK 500 PTR F 6 81.26 172.78 REMARK 500 PTR G 6 -170.48 -64.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA D 67 -10.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO E 5 and PTR E 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PTR E 6 and LEU E 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO F 5 and PTR F 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PTR F 6 and LEU F 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO G 5 and PTR G 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PTR G 6 and LEU G 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO H 5 and PTR H 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PTR H 6 and LEU H 7 DBREF 5NJJ A 20 175 UNP P49757 NUMB_HUMAN 20 175 DBREF 5NJJ B 20 175 UNP P49757 NUMB_HUMAN 20 175 DBREF 5NJJ C 20 175 UNP P49757 NUMB_HUMAN 20 175 DBREF 5NJJ D 20 175 UNP P49757 NUMB_HUMAN 20 175 DBREF 5NJJ E 1 7 PDB 5NJJ 5NJJ 1 7 DBREF 5NJJ F 1 7 PDB 5NJJ 5NJJ 1 7 DBREF 5NJJ G 1 7 PDB 5NJJ 5NJJ 1 7 DBREF 5NJJ H 1 7 PDB 5NJJ 5NJJ 1 7 SEQRES 1 A 156 SER ARG PRO HIS GLN TRP GLN THR ASP GLU GLU GLY VAL SEQRES 2 A 156 ARG THR GLY LYS CYS SER PHE PRO VAL LYS TYR LEU GLY SEQRES 3 A 156 HIS VAL GLU VAL ASP GLU SER ARG GLY MET HIS ILE CYS SEQRES 4 A 156 GLU ASP ALA VAL LYS ARG LEU LYS ALA GLU ARG LYS PHE SEQRES 5 A 156 PHE LYS GLY PHE PHE GLY LYS THR GLY LYS LYS ALA VAL SEQRES 6 A 156 LYS ALA VAL LEU TRP VAL SER ALA ASP GLY LEU ARG VAL SEQRES 7 A 156 VAL ASP GLU LYS THR LYS ASP LEU ILE VAL ASP GLN THR SEQRES 8 A 156 ILE GLU LYS VAL SER PHE CYS ALA PRO ASP ARG ASN PHE SEQRES 9 A 156 ASP ARG ALA PHE SER TYR ILE CYS ARG ASP GLY THR THR SEQRES 10 A 156 ARG ARG TRP ILE CYS HIS CYS PHE MET ALA VAL LYS ASP SEQRES 11 A 156 THR GLY GLU ARG LEU SER HIS ALA VAL GLY CYS ALA PHE SEQRES 12 A 156 ALA ALA CYS LEU GLU ARG LYS GLN LYS ARG GLU LYS GLU SEQRES 1 B 156 SER ARG PRO HIS GLN TRP GLN THR ASP GLU GLU GLY VAL SEQRES 2 B 156 ARG THR GLY LYS CYS SER PHE PRO VAL LYS TYR LEU GLY SEQRES 3 B 156 HIS VAL GLU VAL ASP GLU SER ARG GLY MET HIS ILE CYS SEQRES 4 B 156 GLU ASP ALA VAL LYS ARG LEU LYS ALA GLU ARG LYS PHE SEQRES 5 B 156 PHE LYS GLY PHE PHE GLY LYS THR GLY LYS LYS ALA VAL SEQRES 6 B 156 LYS ALA VAL LEU TRP VAL SER ALA ASP GLY LEU ARG VAL SEQRES 7 B 156 VAL ASP GLU LYS THR LYS ASP LEU ILE VAL ASP GLN THR SEQRES 8 B 156 ILE GLU LYS VAL SER PHE CYS ALA PRO ASP ARG ASN PHE SEQRES 9 B 156 ASP ARG ALA PHE SER TYR ILE CYS ARG ASP GLY THR THR SEQRES 10 B 156 ARG ARG TRP ILE CYS HIS CYS PHE MET ALA VAL LYS ASP SEQRES 11 B 156 THR GLY GLU ARG LEU SER HIS ALA VAL GLY CYS ALA PHE SEQRES 12 B 156 ALA ALA CYS LEU GLU ARG LYS GLN LYS ARG GLU LYS GLU SEQRES 1 C 156 SER ARG PRO HIS GLN TRP GLN THR ASP GLU GLU GLY VAL SEQRES 2 C 156 ARG THR GLY LYS CYS SER PHE PRO VAL LYS TYR LEU GLY SEQRES 3 C 156 HIS VAL GLU VAL ASP GLU SER ARG GLY MET HIS ILE CYS SEQRES 4 C 156 GLU ASP ALA VAL LYS ARG LEU LYS ALA GLU ARG LYS PHE SEQRES 5 C 156 PHE LYS GLY PHE PHE GLY LYS THR GLY LYS LYS ALA VAL SEQRES 6 C 156 LYS ALA VAL LEU TRP VAL SER ALA ASP GLY LEU ARG VAL SEQRES 7 C 156 VAL ASP GLU LYS THR LYS ASP LEU ILE VAL ASP GLN THR SEQRES 8 C 156 ILE GLU LYS VAL SER PHE CYS ALA PRO ASP ARG ASN PHE SEQRES 9 C 156 ASP ARG ALA PHE SER TYR ILE CYS ARG ASP GLY THR THR SEQRES 10 C 156 ARG ARG TRP ILE CYS HIS CYS PHE MET ALA VAL LYS ASP SEQRES 11 C 156 THR GLY GLU ARG LEU SER HIS ALA VAL GLY CYS ALA PHE SEQRES 12 C 156 ALA ALA CYS LEU GLU ARG LYS GLN LYS ARG GLU LYS GLU SEQRES 1 D 156 SER ARG PRO HIS GLN TRP GLN THR ASP GLU GLU GLY VAL SEQRES 2 D 156 ARG THR GLY LYS CYS SER PHE PRO VAL LYS TYR LEU GLY SEQRES 3 D 156 HIS VAL GLU VAL ASP GLU SER ARG GLY MET HIS ILE CYS SEQRES 4 D 156 GLU ASP ALA VAL LYS ARG LEU LYS ALA GLU ARG LYS PHE SEQRES 5 D 156 PHE LYS GLY PHE PHE GLY LYS THR GLY LYS LYS ALA VAL SEQRES 6 D 156 LYS ALA VAL LEU TRP VAL SER ALA ASP GLY LEU ARG VAL SEQRES 7 D 156 VAL ASP GLU LYS THR LYS ASP LEU ILE VAL ASP GLN THR SEQRES 8 D 156 ILE GLU LYS VAL SER PHE CYS ALA PRO ASP ARG ASN PHE SEQRES 9 D 156 ASP ARG ALA PHE SER TYR ILE CYS ARG ASP GLY THR THR SEQRES 10 D 156 ARG ARG TRP ILE CYS HIS CYS PHE MET ALA VAL LYS ASP SEQRES 11 D 156 THR GLY GLU ARG LEU SER HIS ALA VAL GLY CYS ALA PHE SEQRES 12 D 156 ALA ALA CYS LEU GLU ARG LYS GLN LYS ARG GLU LYS GLU SEQRES 1 E 7 ALA TYR ILE GLY PRO PTR LEU SEQRES 1 F 7 ALA TYR ILE GLY PRO PTR LEU SEQRES 1 G 7 ALA TYR ILE GLY PRO PTR LEU SEQRES 1 H 7 ALA TYR ILE GLY PRO PTR LEU HET PTR E 6 16 HET PTR F 6 16 HET PTR G 6 16 HET PTR H 6 16 HET SO4 D 201 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 5 PTR 4(C9 H12 N O6 P) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *(H2 O) HELIX 1 AA1 THR A 27 THR A 34 1 8 HELIX 2 AA2 GLY A 54 PHE A 72 1 19 HELIX 3 AA3 THR A 150 LYS A 169 1 20 HELIX 4 AA4 ASP B 28 THR B 34 1 7 HELIX 5 AA5 GLY B 54 LYS B 73 1 20 HELIX 6 AA6 THR B 150 ARG B 168 1 19 HELIX 7 AA7 GLU C 29 THR C 34 1 6 HELIX 8 AA8 GLY C 54 PHE C 72 1 19 HELIX 9 AA9 THR C 150 ARG C 168 1 19 HELIX 10 AB1 GLU D 29 THR D 34 1 6 HELIX 11 AB2 GLY D 54 GLY D 77 1 24 HELIX 12 AB3 LYS D 78 GLY D 80 5 3 HELIX 13 AB4 THR D 150 LYS D 169 1 20 SHEET 1 AA1 7 LEU A 105 THR A 110 0 SHEET 2 AA1 7 GLY A 94 ASP A 99 -1 N LEU A 95 O GLN A 109 SHEET 3 AA1 7 VAL A 84 VAL A 90 -1 N VAL A 87 O VAL A 98 SHEET 4 AA1 7 SER A 38 GLU A 48 -1 N VAL A 41 O ALA A 86 SHEET 5 AA1 7 ARG A 138 ALA A 146 -1 O CYS A 141 N VAL A 47 SHEET 6 AA1 7 ALA A 126 ASP A 133 -1 N CYS A 131 O ILE A 140 SHEET 7 AA1 7 VAL A 114 PRO A 119 -1 N ALA A 118 O SER A 128 SHEET 1 AA2 8 LEU B 105 THR B 110 0 SHEET 2 AA2 8 GLY B 94 ASP B 99 -1 N LEU B 95 O GLN B 109 SHEET 3 AA2 8 ALA B 86 VAL B 90 -1 N TRP B 89 O ARG B 96 SHEET 4 AA2 8 SER B 38 GLU B 48 -1 N PHE B 39 O LEU B 88 SHEET 5 AA2 8 ARG B 138 ALA B 146 -1 O CYS B 141 N VAL B 47 SHEET 6 AA2 8 ALA B 126 ASP B 133 -1 N CYS B 131 O ILE B 140 SHEET 7 AA2 8 VAL B 114 PRO B 119 -1 N ALA B 118 O SER B 128 SHEET 8 AA2 8 TYR F 2 ILE F 3 -1 O TYR F 2 N CYS B 117 SHEET 1 AA3 7 LEU C 105 THR C 110 0 SHEET 2 AA3 7 GLY C 94 ASP C 99 -1 N LEU C 95 O GLN C 109 SHEET 3 AA3 7 VAL C 84 VAL C 90 -1 N TRP C 89 O ARG C 96 SHEET 4 AA3 7 SER C 38 VAL C 49 -1 N VAL C 41 O ALA C 86 SHEET 5 AA3 7 ARG C 138 ALA C 146 -1 O CYS C 141 N VAL C 47 SHEET 6 AA3 7 ALA C 126 ASP C 133 -1 N CYS C 131 O ILE C 140 SHEET 7 AA3 7 VAL C 114 PRO C 119 -1 N ALA C 118 O SER C 128 SHEET 1 AA4 8 LEU D 105 THR D 110 0 SHEET 2 AA4 8 GLY D 94 ASP D 99 -1 N LEU D 95 O GLN D 109 SHEET 3 AA4 8 LYS D 85 VAL D 90 -1 N TRP D 89 O ARG D 96 SHEET 4 AA4 8 CYS D 37 VAL D 49 -1 N CYS D 37 O VAL D 90 SHEET 5 AA4 8 ARG D 138 ALA D 146 -1 O CYS D 141 N VAL D 47 SHEET 6 AA4 8 ALA D 126 ASP D 133 -1 N CYS D 131 O ILE D 140 SHEET 7 AA4 8 VAL D 114 PRO D 119 -1 N ALA D 118 O SER D 128 SHEET 8 AA4 8 TYR G 2 ILE G 3 -1 O TYR G 2 N CYS D 117 LINK C PRO E 5 N PTR E 6 1555 1555 1.33 LINK C PTR E 6 N LEU E 7 1555 1555 1.33 LINK C PRO F 5 N PTR F 6 1555 1555 1.32 LINK C PTR F 6 N LEU F 7 1555 1555 1.33 LINK C PRO G 5 N PTR G 6 1555 1555 1.33 LINK C PTR G 6 N LEU G 7 1555 1555 1.33 LINK C PRO H 5 N PTR H 6 1555 1555 1.33 LINK C PTR H 6 N LEU H 7 1555 1555 1.33 CISPEP 1 ALA E 1 TYR E 2 0 13.42 CISPEP 2 ALA H 1 TYR H 2 0 6.32 SITE 1 AC1 2 MET D 55 HIS D 56 SITE 1 AC2 7 ILE C 111 GLU C 112 LYS C 113 VAL C 114 SITE 2 AC2 7 ARG C 132 GLY E 4 LEU E 7 SITE 1 AC3 8 SER C 52 GLU C 112 LYS C 113 VAL C 114 SITE 2 AC3 8 ARG C 132 TRP C 139 GLY E 4 PRO E 5 SITE 1 AC4 8 ILE B 111 GLU B 112 LYS B 113 VAL B 114 SITE 2 AC4 8 ARG B 132 PHE B 162 GLY F 4 LEU F 7 SITE 1 AC5 6 GLU B 112 LYS B 113 ARG B 132 ARG D 53 SITE 2 AC5 6 GLY F 4 PRO F 5 SITE 1 AC6 9 ILE D 111 GLU D 112 LYS D 113 VAL D 114 SITE 2 AC6 9 ARG D 132 PHE D 162 LYS D 169 GLY G 4 SITE 3 AC6 9 LEU G 7 SITE 1 AC7 6 GLU D 112 LYS D 113 VAL D 114 ARG D 132 SITE 2 AC7 6 GLY G 4 PRO G 5 SITE 1 AC8 8 ILE A 111 GLU A 112 LYS A 113 VAL A 114 SITE 2 AC8 8 ARG A 132 TRP A 139 GLY H 4 LEU H 7 SITE 1 AC9 9 SER A 52 GLU A 112 LYS A 113 VAL A 114 SITE 2 AC9 9 ARG A 132 TRP A 139 ARG C 53 GLY H 4 SITE 3 AC9 9 PRO H 5 CRYST1 113.770 120.440 237.440 90.00 90.00 90.00 F 2 2 2 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004212 0.00000