HEADER CELL ADHESION 29-MAR-17 5NJL TITLE CWP2 FROM CLOSTRIDIUM DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL SURFACE PROTEIN (PUTATIVE S-LAYER PROTEIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE R20291; SOURCE 3 ORGANISM_TAXID: 645463; SOURCE 4 GENE: CDR20291_2680; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS S-LAYER, ADHESIN, CELL WALL, ANTIBIOTIC ASSOCIATED DIARRHOEA, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR W.J.BRADSHAW,J.M.KIRBY,A.K.ROBERTS,C.C.SHONE,K.R.ACHARYA REVDAT 6 17-JAN-24 5NJL 1 REMARK REVDAT 5 31-JAN-18 5NJL 1 AUTHOR REVDAT 4 20-SEP-17 5NJL 1 JRNL REVDAT 3 13-SEP-17 5NJL 1 REMARK REVDAT 2 19-JUL-17 5NJL 1 REVDAT 1 05-JUL-17 5NJL 0 JRNL AUTH W.J.BRADSHAW,J.M.KIRBY,A.K.ROBERTS,C.C.SHONE,K.R.ACHARYA JRNL TITL CWP2 FROM CLOSTRIDIUM DIFFICILE EXHIBITS AN EXTENDED THREE JRNL TITL 2 DOMAIN FOLD AND CELL ADHESION IN VITRO. JRNL REF FEBS J. V. 284 2886 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28677344 JRNL DOI 10.1111/FEBS.14157 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 116.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3043 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2339 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2172 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3182 ; 1.440 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5102 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;40.111 ;27.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;12.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.621 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2499 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 357 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1174 ; 2.344 ; 3.881 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1173 ; 2.344 ; 3.878 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1470 ; 3.442 ; 5.802 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1471 ; 3.441 ; 5.806 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 3.488 ; 4.718 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1083 ; 3.132 ; 4.373 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1584 ; 5.064 ; 6.356 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2521 ; 8.252 ;48.050 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2469 ; 7.718 ;47.698 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 120.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 62.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 35.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J6Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMONIUM SULPHATE 0.1 M BIS-TRIS, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.41750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.41750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.41750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.41750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.41750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.41750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 403 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 710 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 GLY A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 29 N CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 174 -133.48 67.48 REMARK 500 TYR A 254 -44.79 -134.78 REMARK 500 ILE A 274 -61.58 10.96 REMARK 500 ASP A 278 159.74 72.29 REMARK 500 SER A 279 -106.38 -126.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 420 DBREF 5NJL A 27 321 UNP C9YQ15 C9YQ15_PEPDR 27 321 SEQRES 1 A 295 THR THR GLN VAL LYS LYS GLU THR ILE THR LYS LYS GLU SEQRES 2 A 295 ALA THR GLU LEU VAL SER LYS VAL ARG ASP LEU MET SER SEQRES 3 A 295 GLN LYS TYR THR GLY GLY SER GLN VAL GLY GLN PRO ILE SEQRES 4 A 295 TYR GLU ILE LYS VAL GLY GLU THR LEU SER LYS LEU LYS SEQRES 5 A 295 ILE ILE THR ASN ILE ASP GLU LEU GLU LYS LEU VAL ASN SEQRES 6 A 295 ALA LEU GLY GLU ASN LYS GLU LEU ILE VAL THR ILE THR SEQRES 7 A 295 ASP LYS GLY HIS ILE THR ASN SER ALA ASN GLU VAL VAL SEQRES 8 A 295 ALA GLU ALA THR GLU LYS TYR GLU ASN SER ALA ASP LEU SEQRES 9 A 295 SER ALA GLU ALA ASN SER ILE THR GLU LYS ALA LYS THR SEQRES 10 A 295 GLU THR ASN GLY ILE TYR LYS VAL ALA ASP VAL LYS ALA SEQRES 11 A 295 SER TYR ASP SER ALA LYS ASP LYS LEU VAL ILE THR LEU SEQRES 12 A 295 ARG ASP LYS THR ASP THR VAL THR SER LYS THR ILE GLU SEQRES 13 A 295 ILE GLY ILE GLY ASP GLU LYS ILE ASP LEU THR ALA ASN SEQRES 14 A 295 PRO VAL ASP SER THR GLY THR ASN LEU ASP PRO SER THR SEQRES 15 A 295 GLU GLY PHE ARG VAL ASN LYS ILE VAL LYS LEU GLY VAL SEQRES 16 A 295 ALA GLY ALA LYS ASN ILE ASP ASP VAL GLN LEU ALA GLU SEQRES 17 A 295 ILE THR ILE LYS ASN SER ASP LEU ASN THR VAL SER PRO SEQRES 18 A 295 GLN ASP LEU TYR ASP GLY TYR ARG LEU THR VAL LYS GLY SEQRES 19 A 295 ASN MET VAL ALA ASN GLY THR SER LYS SER ILE SER ASP SEQRES 20 A 295 ILE SER SER LYS ASP SER GLU THR GLY LYS TYR LYS PHE SEQRES 21 A 295 THR ILE LYS TYR THR ASP ALA SER GLY LYS ALA ILE GLU SEQRES 22 A 295 LEU THR VAL GLU SER THR ASN GLU LYS ASP LEU LYS ASP SEQRES 23 A 295 ALA LYS ALA ALA LEU GLU GLY ASN SER HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET SO4 A 414 5 HET SO4 A 415 5 HET SO4 A 416 5 HET SO4 A 417 5 HET SO4 A 418 5 HET SO4 A 419 5 HET SO4 A 420 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 20(O4 S 2-) FORMUL 22 HOH *229(H2 O) HELIX 1 AA1 GLU A 39 SER A 52 1 14 HELIX 2 AA2 ASN A 82 ALA A 92 1 11 HELIX 3 AA3 ASN A 126 LYS A 142 1 17 HELIX 4 AA4 GLY A 147 VAL A 151 1 5 HELIX 5 AA5 ARG A 212 ILE A 216 5 5 HELIX 6 AA6 SER A 246 TYR A 251 1 6 HELIX 7 AA7 THR A 257 ASN A 265 1 9 HELIX 8 AA8 ASN A 306 GLU A 318 1 13 SHEET 1 AA1 5 LYS A 31 THR A 36 0 SHEET 2 AA1 5 VAL A 230 LYS A 238 1 O THR A 236 N ILE A 35 SHEET 3 AA1 5 GLU A 98 ASP A 105 -1 N LEU A 99 O ILE A 237 SHEET 4 AA1 5 TYR A 66 GLY A 71 -1 N GLY A 71 O ILE A 100 SHEET 5 AA1 5 LYS A 78 ILE A 80 -1 O LYS A 78 N VAL A 70 SHEET 1 AA2 2 ILE A 109 THR A 110 0 SHEET 2 AA2 2 VAL A 116 VAL A 117 -1 O VAL A 117 N ILE A 109 SHEET 1 AA3 2 GLU A 119 ALA A 120 0 SHEET 2 AA3 2 LYS A 225 ASN A 226 -1 O LYS A 225 N ALA A 120 SHEET 1 AA4 3 ALA A 152 ASP A 159 0 SHEET 2 AA4 3 LYS A 164 ASP A 171 -1 O VAL A 166 N SER A 157 SHEET 3 AA4 3 SER A 178 GLY A 184 -1 O ILE A 183 N LEU A 165 SHEET 1 AA5 4 ASP A 241 VAL A 245 0 SHEET 2 AA5 4 ALA A 297 SER A 304 1 O THR A 301 N ASN A 243 SHEET 3 AA5 4 TYR A 284 THR A 291 -1 N PHE A 286 O VAL A 302 SHEET 4 AA5 4 THR A 267 ILE A 271 -1 N THR A 267 O THR A 291 LINK ND2BASN A 82 O3 SO4 A 416 1555 1555 1.31 SITE 1 AC1 5 SER A 45 ARG A 48 LYS A 88 HOH A 507 SITE 2 AC1 5 HOH A 609 SITE 1 AC2 3 HIS A 108 HOH A 501 HOH A 508 SITE 1 AC3 3 LYS A 218 HOH A 545 HOH A 652 SITE 1 AC4 3 ASP A 153 ARG A 170 HOH A 548 SITE 1 AC5 4 ASN A 226 ASP A 228 ASP A 229 HOH A 570 SITE 1 AC6 2 LYS A 225 ASN A 226 SITE 1 AC7 3 LYS A 37 GLU A 95 ASN A 239 SITE 1 AC8 6 GLU A 182 SER A 199 LYS A 215 HOH A 515 SITE 2 AC8 6 HOH A 564 HOH A 658 SITE 1 AC9 3 LYS A 38 LYS A 172 HOH A 543 SITE 1 AD1 2 LYS A 78 ILE A 79 SITE 1 AD2 3 GLU A 125 ASN A 126 SO4 A 420 SITE 1 AD3 5 ASN A 146 GLY A 147 LYS A 150 ASP A 205 SITE 2 AD3 5 SER A 207 SITE 1 AD4 2 SER A 272 ASP A 273 SITE 1 AD5 3 GLU A 144 ASN A 146 THR A 193 SITE 1 AD6 3 ASP A 191 ALA A 222 GLY A 223 SITE 1 AD7 2 THR A 81 ASN A 82 SITE 1 AD8 3 GLY A 94 GLU A 95 HOH A 523 SITE 1 AD9 3 THR A 267 SER A 268 LYS A 269 SITE 1 AE1 2 THR A 305 ASN A 306 SITE 1 AE2 6 ASN A 126 SER A 127 THR A 257 SO4 A 411 SITE 2 AE2 6 HOH A 526 HOH A 578 CRYST1 134.828 134.828 102.835 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007417 0.004282 0.000000 0.00000 SCALE2 0.000000 0.008564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009724 0.00000