HEADER HYDROLASE 29-MAR-17 5NJS TITLE MIX-AND-DIFFUSE SERIAL SYNCHROTRON CRYSTALLOGRAPHY: STRUCTURE OF N,N', TITLE 2 N''-TRIACETYLCHITOTRIOSE BOUND TO LYSOZYME WITH 50S TIME-DELAY, TITLE 3 PHASED WITH 1HEW COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS COMPETITIVE INHIBITOR GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.OBERTHUER,A.MEENTS,K.R.BEYERLEIN,H.N.CHAPMAN,J.LIESEKE REVDAT 5 13-NOV-24 5NJS 1 REMARK REVDAT 4 17-JAN-24 5NJS 1 HETSYN REVDAT 3 29-JUL-20 5NJS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 22-NOV-17 5NJS 1 JRNL REVDAT 1 18-OCT-17 5NJS 0 JRNL AUTH K.R.BEYERLEIN,D.DIERKSMEYER,V.MARIANI,M.KUHN,I.SARROU, JRNL AUTH 2 A.OTTAVIANO,S.AWEL,J.KNOSKA,S.FUGLERUD,O.JONSSON,S.STERN, JRNL AUTH 3 M.O.WIEDORN,O.YEFANOV,L.ADRIANO,R.BEAN,A.BURKHARDT, JRNL AUTH 4 P.FISCHER,M.HEYMANN,D.A.HORKE,K.E.J.JUNGNICKEL,E.KOVALEVA, JRNL AUTH 5 O.LORBEER,M.METZ,J.MEYER,A.MORGAN,K.PANDE,S.PANNEERSELVAM, JRNL AUTH 6 C.SEURING,A.TOLSTIKOVA,J.LIESKE,S.APLIN,M.ROESSLE,T.A.WHITE, JRNL AUTH 7 H.N.CHAPMAN,A.MEENTS,D.OBERTHUER JRNL TITL MIX-AND-DIFFUSE SERIAL SYNCHROTRON CRYSTALLOGRAPHY. JRNL REF IUCRJ V. 4 769 2017 JRNL REFN ESSN 2052-2525 JRNL PMID 29123679 JRNL DOI 10.1107/S2052252517013124 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.6825 - 3.6580 1.00 1374 153 0.1375 0.1700 REMARK 3 2 3.6580 - 2.9054 1.00 1293 143 0.1560 0.1767 REMARK 3 3 2.9054 - 2.5387 1.00 1260 140 0.1779 0.2188 REMARK 3 4 2.5387 - 2.3068 1.00 1258 140 0.1636 0.1887 REMARK 3 5 2.3068 - 2.1416 1.00 1251 140 0.1623 0.2215 REMARK 3 6 2.1416 - 2.0154 1.00 1237 137 0.1826 0.2415 REMARK 3 7 2.0154 - 1.9146 1.00 1236 138 0.1847 0.2380 REMARK 3 8 1.9146 - 1.8313 1.00 1250 139 0.1990 0.2212 REMARK 3 9 1.8313 - 1.7608 1.00 1238 137 0.2615 0.3076 REMARK 3 10 1.7608 - 1.7001 1.00 1216 136 0.3229 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1070 REMARK 3 ANGLE : 0.623 1454 REMARK 3 CHIRALITY : 0.042 159 REMARK 3 PLANARITY : 0.003 184 REMARK 3 DIHEDRAL : 9.350 629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6335 16.5972 9.5773 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.3515 REMARK 3 T33: 0.3715 T12: -0.0188 REMARK 3 T13: -0.0951 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 3.7627 L22: 2.4005 REMARK 3 L33: 3.0860 L12: -0.6346 REMARK 3 L13: -0.1687 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: 0.1436 S13: -0.3064 REMARK 3 S21: -0.3797 S22: 0.0003 S23: 0.3602 REMARK 3 S31: 0.5211 S32: -0.1857 S33: -0.0554 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7365 24.0288 20.6152 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.3790 REMARK 3 T33: 0.3593 T12: -0.0044 REMARK 3 T13: 0.0273 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.9142 L22: 2.0090 REMARK 3 L33: 1.7331 L12: 1.3539 REMARK 3 L13: 0.6247 L23: -0.3746 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.2480 S13: -0.1174 REMARK 3 S21: 0.2643 S22: 0.0078 S23: 0.8290 REMARK 3 S31: 0.2123 S32: -0.5101 S33: 0.0630 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5247 22.0453 13.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2857 REMARK 3 T33: 0.2887 T12: 0.0279 REMARK 3 T13: -0.0177 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.0625 L22: 3.1041 REMARK 3 L33: 0.9351 L12: -1.6519 REMARK 3 L13: 0.5228 L23: -0.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.2002 S12: 0.1262 S13: 0.0330 REMARK 3 S21: -0.3316 S22: -0.1596 S23: -0.1885 REMARK 3 S31: 0.0052 S32: 0.0215 S33: -0.0542 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7181 20.2139 24.1814 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.3590 REMARK 3 T33: 0.3297 T12: -0.0244 REMARK 3 T13: -0.0342 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 6.1630 L22: 5.4037 REMARK 3 L33: 5.1965 L12: 4.3410 REMARK 3 L13: 4.8152 L23: 5.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: 0.3492 S13: 0.1179 REMARK 3 S21: -0.4861 S22: 0.5720 S23: -0.6166 REMARK 3 S31: -0.6973 S32: 0.6044 S33: -0.7536 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2813 17.0755 26.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.3029 REMARK 3 T33: 0.2601 T12: 0.0348 REMARK 3 T13: -0.0177 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.8156 L22: 3.2392 REMARK 3 L33: 2.1136 L12: -1.9315 REMARK 3 L13: -0.7146 L23: -0.7695 REMARK 3 S TENSOR REMARK 3 S11: -0.1518 S12: -0.3297 S13: 0.1069 REMARK 3 S21: 0.2638 S22: 0.1285 S23: -0.0893 REMARK 3 S31: -0.0391 S32: 0.2405 S33: -0.0402 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1024 14.6419 33.4503 REMARK 3 T TENSOR REMARK 3 T11: 0.4684 T22: 0.5553 REMARK 3 T33: 0.3675 T12: 0.1248 REMARK 3 T13: 0.0059 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.9977 L22: 3.5004 REMARK 3 L33: 4.0310 L12: -1.2407 REMARK 3 L13: 0.9727 L23: 0.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.5940 S12: -1.7548 S13: 0.0035 REMARK 3 S21: 0.7582 S22: 0.4630 S23: -0.2191 REMARK 3 S31: -0.3371 S32: -0.2454 S33: 0.2126 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5924 9.8268 19.9007 REMARK 3 T TENSOR REMARK 3 T11: 0.3910 T22: 0.2939 REMARK 3 T33: 0.4309 T12: 0.0239 REMARK 3 T13: -0.0136 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 4.6326 L22: 1.7036 REMARK 3 L33: 3.0169 L12: -0.6526 REMARK 3 L13: 2.1905 L23: 0.1810 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: 0.2070 S13: -0.5962 REMARK 3 S21: -0.2730 S22: 0.1963 S23: 0.5039 REMARK 3 S31: 0.1303 S32: 0.0691 S33: -0.1312 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0717 17.3811 24.7269 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.3019 REMARK 3 T33: 0.3483 T12: -0.0209 REMARK 3 T13: 0.0675 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.8875 L22: 8.2960 REMARK 3 L33: 4.0462 L12: -0.5650 REMARK 3 L13: -0.2670 L23: 4.0620 REMARK 3 S TENSOR REMARK 3 S11: -0.2507 S12: -0.0846 S13: -0.4113 REMARK 3 S21: 0.5757 S22: -0.0624 S23: 0.7612 REMARK 3 S31: 0.4333 S32: -0.2833 S33: 0.2611 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0872 29.8369 22.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.2908 REMARK 3 T33: 0.2902 T12: 0.0096 REMARK 3 T13: -0.0168 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.8881 L22: 2.9709 REMARK 3 L33: 6.3301 L12: -0.2556 REMARK 3 L13: -2.3171 L23: -0.4317 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.3581 S13: 0.3134 REMARK 3 S21: 0.2453 S22: 0.1459 S23: -0.2413 REMARK 3 S31: -0.2099 S32: 0.6835 S33: 0.0064 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2312 28.5453 8.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.4475 REMARK 3 T33: 0.3963 T12: 0.0092 REMARK 3 T13: -0.0619 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.0623 L22: 5.1526 REMARK 3 L33: 5.4082 L12: 3.1538 REMARK 3 L13: 3.2758 L23: 3.1281 REMARK 3 S TENSOR REMARK 3 S11: -0.3145 S12: 0.2957 S13: 0.4260 REMARK 3 S21: -0.5975 S22: -0.0986 S23: 0.7583 REMARK 3 S31: -0.1344 S32: -0.6223 S33: 0.3305 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 22.681 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4932. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 267.0 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1HEW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WITH SIZES BETWEEN 6 AND 8 UM REMARK 280 IN DIAMETER WERE OBTAINED BY ADDING THREE PARTS OF PRECIPITANT REMARK 280 (1M NACL, 40% ETHYLENE GLYCOL (V/V), 15% PEG4000 (W/V), 50 MM REMARK 280 ACETATE BUFFER AT PH 3.5, FILTERED THROUGH 450 NM FILTER) TO ONE REMARK 280 PART OF LYSOZYME (SIGMA-ALDRICH, 126 MG/ML DISSOLVED IN50 MM REMARK 280 ACETATE BUFFER, PH 3.5, FILTERED THROUGH 100 NM FILTER) AT 274K REMARK 280 (THERMOSTAT C, EPPENDORF, GERMANY). THE RESULTING MIXTURE WAS REMARK 280 IMMEDIATELY SUBJECTED TO RAPID MIXING AND INCUBATED FOR 30 REMARK 280 MINUTES AT 274K., BATCH MODE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.80500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.80500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.72500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 360 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 356 O HOH A 358 1.82 REMARK 500 OE1 GLN A 121 O HOH A 301 1.87 REMARK 500 O HOH A 344 O HOH A 350 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 22.12 -141.30 REMARK 500 PRO A 70 -74.95 -39.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 85.7 REMARK 620 3 SER A 72 OG 90.7 160.0 REMARK 620 4 ARG A 73 O 100.4 97.5 102.5 REMARK 620 5 HOH A 343 O 98.3 86.6 74.5 161.1 REMARK 620 6 HOH A 355 O 169.3 101.2 80.0 87.1 74.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NJR RELATED DB: PDB REMARK 900 SAME DATA, BUT 5NJR WAS REFINED WITH 4ET8 AS STARTING MODEL. REMARK 900 RELATED ID: 5NJQ RELATED DB: PDB REMARK 900 RELATED ID: 5NJP RELATED DB: PDB DBREF 5NJS A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET NAG B 1 29 HET NAG B 2 27 HET NAG B 3 28 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET NA A 207 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 CL 3(CL 1-) FORMUL 6 NA NA 1+ FORMUL 7 HOH *60(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.45 LINK O SER A 60 NA NA A 207 1555 1555 2.33 LINK O CYS A 64 NA NA A 207 1555 1555 2.37 LINK OG SER A 72 NA NA A 207 1555 1555 2.49 LINK O ARG A 73 NA NA A 207 1555 1555 2.41 LINK NA NA A 207 O HOH A 343 1555 1555 2.68 LINK NA NA A 207 O HOH A 355 1555 1555 2.46 CRYST1 79.610 79.610 38.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026110 0.00000