HEADER TRANSPORT PROTEIN 31-MAR-17 5NKQ TITLE CRYSTAL STRUCTURE OF A DUAL TOPOLOGY FLUORIDE ION CHANNEL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FLUORIDE ION TRANSPORTER CRCB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MONOBODY; COMPND 7 CHAIN: E, F, G, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: CRCB, BP1217; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DUAL TOPOLOGY CHANNEL, FLUORIDE CHANNEL, MONOBODY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.STOCKBRIDGE,C.MILLER,S.NEWSTEAD REVDAT 3 17-JAN-24 5NKQ 1 LINK REVDAT 2 23-AUG-17 5NKQ 1 REMARK REVDAT 1 26-APR-17 5NKQ 0 SPRSDE 26-APR-17 5NKQ 5FXB JRNL AUTH R.B.STOCKBRIDGE,L.KOLMAKOVA-PARTENSKY,T.SHANE,A.KOIDE, JRNL AUTH 2 S.KOIDE,C.MILLER,S.NEWSTEAD JRNL TITL CRYSTAL STRUCTURES OF A DOUBLE-BARRELLED FLUORIDE ION JRNL TITL 2 CHANNEL. JRNL REF NATURE V. 525 548 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26344196 JRNL DOI 10.1038/NATURE14981 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 51554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9596 - 5.6823 0.96 2752 98 0.1984 0.2037 REMARK 3 2 5.6823 - 4.5120 0.97 2717 122 0.2030 0.2084 REMARK 3 3 4.5120 - 3.9422 0.97 2728 151 0.2108 0.2202 REMARK 3 4 3.9422 - 3.5820 0.98 2725 161 0.1979 0.2591 REMARK 3 5 3.5820 - 3.3254 0.98 2778 154 0.2049 0.2072 REMARK 3 6 3.3254 - 3.1294 0.98 2734 147 0.1946 0.2392 REMARK 3 7 3.1294 - 2.9727 0.98 2759 145 0.2006 0.2211 REMARK 3 8 2.9727 - 2.8433 0.98 2730 161 0.2075 0.2181 REMARK 3 9 2.8433 - 2.7339 0.97 2688 175 0.2245 0.2520 REMARK 3 10 2.7339 - 2.6396 0.97 2699 156 0.2305 0.2599 REMARK 3 11 2.6396 - 2.5571 0.97 2713 161 0.2294 0.3175 REMARK 3 12 2.5571 - 2.4840 0.96 2763 105 0.2478 0.3083 REMARK 3 13 2.4840 - 2.4186 0.96 2717 123 0.2658 0.2876 REMARK 3 14 2.4186 - 2.3596 0.96 2711 122 0.2734 0.3460 REMARK 3 15 2.3596 - 2.3060 0.95 2710 129 0.2895 0.3162 REMARK 3 16 2.3060 - 2.2569 0.97 2649 146 0.2884 0.3517 REMARK 3 17 2.2569 - 2.2117 0.96 2725 160 0.3028 0.3312 REMARK 3 18 2.2117 - 2.1700 0.96 2694 146 0.2884 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6581 REMARK 3 ANGLE : 0.421 9030 REMARK 3 CHIRALITY : 0.037 1064 REMARK 3 PLANARITY : 0.003 1085 REMARK 3 DIHEDRAL : 9.376 3684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -5.8456 -50.4237 18.2977 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.3107 REMARK 3 T33: 0.3822 T12: 0.0005 REMARK 3 T13: 0.0110 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.0317 L22: 0.1689 REMARK 3 L33: 0.3656 L12: 0.0134 REMARK 3 L13: 0.0365 L23: 0.1021 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0171 S13: 0.0116 REMARK 3 S21: -0.0159 S22: -0.0051 S23: -0.0404 REMARK 3 S31: -0.0215 S32: 0.0466 S33: 0.0122 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-26% (V/V) POLYETHYLENE GLYCOL 500 REMARK 280 DME, 0.1 M NA-CITRATE PH 5.5, 10 MM NAF, BATCH MODE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 3 REMARK 465 TYR B 4 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 THR D 3 REMARK 465 TYR D 4 REMARK 465 SER E 1 REMARK 465 VAL E 2 REMARK 465 GLY E 41 REMARK 465 GLY E 42 REMARK 465 ASN E 43 REMARK 465 SER F 1 REMARK 465 VAL F 2 REMARK 465 GLY F 41 REMARK 465 GLY F 42 REMARK 465 ASN F 43 REMARK 465 SER F 44 REMARK 465 GLY G 41 REMARK 465 GLY G 42 REMARK 465 ASN G 43 REMARK 465 SER G 44 REMARK 465 GLY H 41 REMARK 465 GLY H 42 REMARK 465 ASN H 43 REMARK 465 SER H 44 REMARK 465 PRO H 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU E 29 NH1 ARG F 91 1454 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 72 -63.41 -90.92 REMARK 500 VAL B 72 -62.65 -95.12 REMARK 500 VAL C 72 -62.68 -90.03 REMARK 500 VAL D 72 -61.29 -92.29 REMARK 500 PRO E 16 -18.99 -47.18 REMARK 500 ASP E 28 -135.29 47.81 REMARK 500 GLU E 29 -36.66 59.03 REMARK 500 THR F 57 148.71 64.19 REMARK 500 SER G 3 -71.90 -115.34 REMARK 500 SER H 3 -73.44 -109.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 336 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 337 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 326 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH G 156 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 77 O REMARK 620 2 THR A 80 O 107.5 REMARK 620 3 GLY B 77 O 102.7 99.5 REMARK 620 4 THR B 80 O 101.3 137.7 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 77 O REMARK 620 2 THR C 80 O 104.5 REMARK 620 3 GLY D 77 O 100.3 97.6 REMARK 620 4 THR D 80 O 100.7 144.2 102.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FXB RELATED DB: PDB REMARK 900 ON THE C-D LOOP OF THE MONOBODY IN THE PREVIOUS STRUCTURE SHOULD REMARK 900 HAVE BEEN MODELLED AS PGSSST, BUT WAS MISTAKENLY MODELLED AS PGSST. REMARK 900 THIS IS NOW CORRECTED. DBREF 5NKQ A 1 128 UNP Q7VYU0 CRCB_BORPE 1 128 DBREF 5NKQ B 1 128 UNP Q7VYU0 CRCB_BORPE 1 128 DBREF 5NKQ C 1 128 UNP Q7VYU0 CRCB_BORPE 1 128 DBREF 5NKQ D 1 128 UNP Q7VYU0 CRCB_BORPE 1 128 DBREF 5NKQ E 1 92 PDB 5NKQ 5NKQ 1 92 DBREF 5NKQ F 1 92 PDB 5NKQ 5NKQ 1 92 DBREF 5NKQ G 1 92 PDB 5NKQ 5NKQ 1 92 DBREF 5NKQ H 1 92 PDB 5NKQ 5NKQ 1 92 SEQADV 5NKQ LYS A 29 UNP Q7VYU0 ARG 29 CONFLICT SEQADV 5NKQ CYS A 94 UNP Q7VYU0 GLU 94 CONFLICT SEQADV 5NKQ LYS B 29 UNP Q7VYU0 ARG 29 CONFLICT SEQADV 5NKQ CYS B 94 UNP Q7VYU0 GLU 94 CONFLICT SEQADV 5NKQ LYS C 29 UNP Q7VYU0 ARG 29 CONFLICT SEQADV 5NKQ CYS C 94 UNP Q7VYU0 GLU 94 CONFLICT SEQADV 5NKQ LYS D 29 UNP Q7VYU0 ARG 29 CONFLICT SEQADV 5NKQ CYS D 94 UNP Q7VYU0 GLU 94 CONFLICT SEQRES 1 A 128 MET LEU THR TYR ALA PRO LEU ASN PHE ILE ALA ILE GLY SEQRES 2 A 128 ILE GLY ALA THR LEU GLY ALA TRP LEU ARG TRP VAL LEU SEQRES 3 A 128 GLY LEU LYS LEU ASN GLY ALA GLY TRP PRO TRP GLY THR SEQRES 4 A 128 LEU THR ALA ASN LEU VAL GLY GLY TYR LEU ILE GLY VAL SEQRES 5 A 128 MET VAL ALA LEU ILE ALA SER HIS PRO GLU TRP PRO ALA SEQRES 6 A 128 TRP ILE ARG LEU ALA ALA VAL THR GLY PHE LEU GLY GLY SEQRES 7 A 128 LEU THR THR PHE SER THR PHE SER ALA GLU THR VAL ASP SEQRES 8 A 128 MET LEU CYS ARG GLY VAL TYR ALA THR ALA ALA ALA TYR SEQRES 9 A 128 ALA GLY ALA SER LEU ALA GLY SER LEU ALA MET THR GLY SEQRES 10 A 128 LEU GLY LEU ALA THR VAL ARG LEU LEU LEU ARG SEQRES 1 B 128 MET LEU THR TYR ALA PRO LEU ASN PHE ILE ALA ILE GLY SEQRES 2 B 128 ILE GLY ALA THR LEU GLY ALA TRP LEU ARG TRP VAL LEU SEQRES 3 B 128 GLY LEU LYS LEU ASN GLY ALA GLY TRP PRO TRP GLY THR SEQRES 4 B 128 LEU THR ALA ASN LEU VAL GLY GLY TYR LEU ILE GLY VAL SEQRES 5 B 128 MET VAL ALA LEU ILE ALA SER HIS PRO GLU TRP PRO ALA SEQRES 6 B 128 TRP ILE ARG LEU ALA ALA VAL THR GLY PHE LEU GLY GLY SEQRES 7 B 128 LEU THR THR PHE SER THR PHE SER ALA GLU THR VAL ASP SEQRES 8 B 128 MET LEU CYS ARG GLY VAL TYR ALA THR ALA ALA ALA TYR SEQRES 9 B 128 ALA GLY ALA SER LEU ALA GLY SER LEU ALA MET THR GLY SEQRES 10 B 128 LEU GLY LEU ALA THR VAL ARG LEU LEU LEU ARG SEQRES 1 C 128 MET LEU THR TYR ALA PRO LEU ASN PHE ILE ALA ILE GLY SEQRES 2 C 128 ILE GLY ALA THR LEU GLY ALA TRP LEU ARG TRP VAL LEU SEQRES 3 C 128 GLY LEU LYS LEU ASN GLY ALA GLY TRP PRO TRP GLY THR SEQRES 4 C 128 LEU THR ALA ASN LEU VAL GLY GLY TYR LEU ILE GLY VAL SEQRES 5 C 128 MET VAL ALA LEU ILE ALA SER HIS PRO GLU TRP PRO ALA SEQRES 6 C 128 TRP ILE ARG LEU ALA ALA VAL THR GLY PHE LEU GLY GLY SEQRES 7 C 128 LEU THR THR PHE SER THR PHE SER ALA GLU THR VAL ASP SEQRES 8 C 128 MET LEU CYS ARG GLY VAL TYR ALA THR ALA ALA ALA TYR SEQRES 9 C 128 ALA GLY ALA SER LEU ALA GLY SER LEU ALA MET THR GLY SEQRES 10 C 128 LEU GLY LEU ALA THR VAL ARG LEU LEU LEU ARG SEQRES 1 D 128 MET LEU THR TYR ALA PRO LEU ASN PHE ILE ALA ILE GLY SEQRES 2 D 128 ILE GLY ALA THR LEU GLY ALA TRP LEU ARG TRP VAL LEU SEQRES 3 D 128 GLY LEU LYS LEU ASN GLY ALA GLY TRP PRO TRP GLY THR SEQRES 4 D 128 LEU THR ALA ASN LEU VAL GLY GLY TYR LEU ILE GLY VAL SEQRES 5 D 128 MET VAL ALA LEU ILE ALA SER HIS PRO GLU TRP PRO ALA SEQRES 6 D 128 TRP ILE ARG LEU ALA ALA VAL THR GLY PHE LEU GLY GLY SEQRES 7 D 128 LEU THR THR PHE SER THR PHE SER ALA GLU THR VAL ASP SEQRES 8 D 128 MET LEU CYS ARG GLY VAL TYR ALA THR ALA ALA ALA TYR SEQRES 9 D 128 ALA GLY ALA SER LEU ALA GLY SER LEU ALA MET THR GLY SEQRES 10 D 128 LEU GLY LEU ALA THR VAL ARG LEU LEU LEU ARG SEQRES 1 E 92 SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL ALA SEQRES 2 E 92 ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA TYR SEQRES 3 E 92 TYR ASP GLU VAL MET TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 E 92 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 E 92 GLY SER SER SER THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 E 92 GLY VAL ASP TYR THR ILE THR VAL TYR ALA TYR TYR ASP SEQRES 7 E 92 SER TYR GLY HIS TRP SER PRO ILE SER ILE ASN TYR ARG SEQRES 8 E 92 THR SEQRES 1 F 92 SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL ALA SEQRES 2 F 92 ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA TYR SEQRES 3 F 92 TYR ASP GLU VAL MET TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 F 92 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 F 92 GLY SER SER SER THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 F 92 GLY VAL ASP TYR THR ILE THR VAL TYR ALA TYR TYR ASP SEQRES 7 F 92 SER TYR GLY HIS TRP SER PRO ILE SER ILE ASN TYR ARG SEQRES 8 F 92 THR SEQRES 1 G 92 SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL ALA SEQRES 2 G 92 ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA TYR SEQRES 3 G 92 TYR ASP GLU VAL MET TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 G 92 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 G 92 GLY SER SER SER THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 G 92 GLY VAL ASP TYR THR ILE THR VAL TYR ALA TYR TYR ASP SEQRES 7 G 92 SER TYR GLY HIS TRP SER PRO ILE SER ILE ASN TYR ARG SEQRES 8 G 92 THR SEQRES 1 H 92 SER VAL SER SER VAL PRO THR LYS LEU GLU VAL VAL ALA SEQRES 2 H 92 ALA THR PRO THR SER LEU LEU ILE SER TRP ASP ALA TYR SEQRES 3 H 92 TYR ASP GLU VAL MET TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 H 92 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 H 92 GLY SER SER SER THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 H 92 GLY VAL ASP TYR THR ILE THR VAL TYR ALA TYR TYR ASP SEQRES 7 H 92 SER TYR GLY HIS TRP SER PRO ILE SER ILE ASN TYR ARG SEQRES 8 H 92 THR HET NA A 201 1 HET F A 202 1 HET F A 203 1 HET F B 201 1 HET F B 202 1 HET NA C 201 1 HET F C 202 1 HET F C 203 1 HET F C 204 1 HET F D 201 1 HETNAM NA SODIUM ION HETNAM F FLUORIDE ION FORMUL 9 NA 2(NA 1+) FORMUL 10 F 8(F 1-) FORMUL 19 HOH *278(H2 O) HELIX 1 AA1 ALA A 5 ASN A 31 1 27 HELIX 2 AA2 PRO A 36 HIS A 60 1 25 HELIX 3 AA3 PRO A 64 VAL A 72 1 9 HELIX 4 AA4 GLY A 74 THR A 80 1 7 HELIX 5 AA5 PHE A 82 GLY A 96 1 15 HELIX 6 AA6 VAL A 97 LEU A 127 1 31 HELIX 7 AA7 PRO B 6 ASN B 31 1 26 HELIX 8 AA8 PRO B 36 HIS B 60 1 25 HELIX 9 AA9 PRO B 64 VAL B 72 1 9 HELIX 10 AB1 GLY B 74 THR B 80 1 7 HELIX 11 AB2 PHE B 82 GLY B 96 1 15 HELIX 12 AB3 VAL B 97 LEU B 127 1 31 HELIX 13 AB4 ALA C 5 ASN C 31 1 27 HELIX 14 AB5 PRO C 36 HIS C 60 1 25 HELIX 15 AB6 PRO C 64 VAL C 72 1 9 HELIX 16 AB7 GLY C 74 THR C 80 1 7 HELIX 17 AB8 PHE C 82 GLY C 96 1 15 HELIX 18 AB9 VAL C 97 LEU C 127 1 31 HELIX 19 AC1 PRO D 6 ASN D 31 1 26 HELIX 20 AC2 PRO D 36 HIS D 60 1 25 HELIX 21 AC3 PRO D 64 VAL D 72 1 9 HELIX 22 AC4 GLY D 74 THR D 80 1 7 HELIX 23 AC5 PHE D 82 GLY D 96 1 15 HELIX 24 AC6 VAL D 97 ARG D 128 1 32 SHEET 1 AA1 3 LEU E 9 THR E 15 0 SHEET 2 AA1 3 SER E 18 TRP E 23 -1 O SER E 18 N THR E 15 SHEET 3 AA1 3 THR E 57 ILE E 60 -1 O ALA E 58 N ILE E 21 SHEET 1 AA2 4 GLN E 47 PRO E 52 0 SHEET 2 AA2 4 TYR E 32 GLU E 39 -1 N TYR E 37 O GLN E 47 SHEET 3 AA2 4 ASP E 68 TYR E 76 -1 O THR E 72 N THR E 36 SHEET 4 AA2 4 ILE E 86 ARG E 91 -1 O ILE E 88 N ILE E 71 SHEET 1 AA3 3 GLU F 10 ALA F 14 0 SHEET 2 AA3 3 LEU F 19 SER F 22 -1 O SER F 22 N GLU F 10 SHEET 3 AA3 3 ALA F 58 ILE F 60 -1 O ILE F 60 N LEU F 19 SHEET 1 AA4 4 GLN F 47 PRO F 52 0 SHEET 2 AA4 4 TYR F 32 GLU F 39 -1 N ILE F 35 O PHE F 49 SHEET 3 AA4 4 ASP F 68 TYR F 76 -1 O THR F 72 N THR F 36 SHEET 4 AA4 4 ILE F 86 ARG F 91 -1 O ILE F 88 N ILE F 71 SHEET 1 AA5 3 LEU G 9 THR G 15 0 SHEET 2 AA5 3 SER G 18 TRP G 23 -1 O SER G 18 N THR G 15 SHEET 3 AA5 3 THR G 57 ILE G 60 -1 O ILE G 60 N LEU G 19 SHEET 1 AA6 4 GLN G 47 PRO G 52 0 SHEET 2 AA6 4 TYR G 32 GLU G 39 -1 N TYR G 37 O GLN G 47 SHEET 3 AA6 4 ASP G 68 TYR G 76 -1 O THR G 72 N THR G 36 SHEET 4 AA6 4 ILE G 86 ARG G 91 -1 O TYR G 90 N TYR G 69 SHEET 1 AA7 3 LEU H 9 THR H 15 0 SHEET 2 AA7 3 SER H 18 TRP H 23 -1 O SER H 18 N THR H 15 SHEET 3 AA7 3 THR H 57 ILE H 60 -1 O ILE H 60 N LEU H 19 SHEET 1 AA8 4 GLN H 47 PRO H 52 0 SHEET 2 AA8 4 TYR H 32 GLU H 39 -1 N ILE H 35 O PHE H 49 SHEET 3 AA8 4 ASP H 68 ASP H 78 -1 O TYR H 74 N ARG H 34 SHEET 4 AA8 4 GLY H 81 HIS H 82 -1 O GLY H 81 N ASP H 78 SHEET 1 AA9 4 GLN H 47 PRO H 52 0 SHEET 2 AA9 4 TYR H 32 GLU H 39 -1 N ILE H 35 O PHE H 49 SHEET 3 AA9 4 ASP H 68 ASP H 78 -1 O TYR H 74 N ARG H 34 SHEET 4 AA9 4 ILE H 86 ARG H 91 -1 O TYR H 90 N TYR H 69 LINK O GLY A 77 NA NA A 201 1555 1555 2.29 LINK O THR A 80 NA NA A 201 1555 1555 2.26 LINK NA NA A 201 O GLY B 77 1555 1555 2.32 LINK NA NA A 201 O THR B 80 1555 1555 2.26 LINK O GLY C 77 NA NA C 201 1555 1555 2.33 LINK O THR C 80 NA NA C 201 1555 1555 2.28 LINK NA NA C 201 O GLY D 77 1555 1555 2.31 LINK NA NA C 201 O THR D 80 1555 1555 2.27 CISPEP 1 VAL E 5 PRO E 6 0 -0.25 CISPEP 2 VAL F 5 PRO F 6 0 0.33 CISPEP 3 VAL G 5 PRO G 6 0 0.42 CISPEP 4 VAL H 5 PRO H 6 0 0.92 SITE 1 AC1 4 GLY A 77 THR A 80 GLY B 77 THR B 80 SITE 1 AC2 4 ASN A 43 PHE A 85 TYR A 104 SER A 108 SITE 1 AC3 5 PHE A 82 SER A 83 ASN B 43 GLY B 47 SITE 2 AC3 5 SER B 112 SITE 1 AC4 4 LEU B 40 ASN B 43 TYR B 104 SER B 108 SITE 1 AC5 6 ASN A 43 GLY A 47 THR A 80 SER A 112 SITE 2 AC5 6 PHE B 82 SER B 83 SITE 1 AC6 4 GLY C 77 THR C 80 GLY D 77 THR D 80 SITE 1 AC7 5 ASN C 43 GLY C 47 SER C 112 PHE D 82 SITE 2 AC7 5 SER D 83 SITE 1 AC8 5 PHE C 82 SER C 83 ASN D 43 GLY D 47 SITE 2 AC8 5 SER D 112 SITE 1 AC9 4 LEU C 40 ASN C 43 TYR C 104 SER C 108 SITE 1 AD1 4 LEU D 40 ASN D 43 TYR D 104 SER D 108 CRYST1 40.590 84.060 85.960 109.41 101.40 101.37 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024637 0.004954 0.007461 0.00000 SCALE2 0.000000 0.012134 0.005083 0.00000 SCALE3 0.000000 0.000000 0.012866 0.00000