HEADER LIGASE 04-APR-17 5NLB TITLE CRYSTAL STRUCTURE OF HUMAN CUL3 N-TERMINAL DOMAIN BOUND TO KEAP1 BTB TITLE 2 AND 3-BOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 51-204; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2,INRF2,KELCH-LIKE PROTEIN 19; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CULLIN-3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CUL-3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KEAP1, INRF2, KIAA0132, KLHL19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CUL3, KIAA0617; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ADAMSON,T.KROJER,D.M.PINKAS,S.G.BARTUAL,N.A.BURGESS-BROWN, AUTHOR 2 O.BORKOWSKA,R.CHALK,J.A.NEWMAN,J.KOPEC,S.E.DIXON-CLARKE,S.MATHEA, AUTHOR 3 R.SETHI,S.VELUPILLAI,S.MACKINNON,F.VON DELFT,C.H.ARROWSMITH, AUTHOR 4 A.M.EDWARDS,C.BOUNTRA,A.BULLOCK REVDAT 5 17-JAN-24 5NLB 1 REMARK REVDAT 4 08-NOV-23 5NLB 1 JRNL REVDAT 3 16-OCT-19 5NLB 1 REMARK REVDAT 2 02-AUG-17 5NLB 1 REVDAT 1 19-APR-17 5NLB 0 JRNL AUTH R.J.ADAMSON,N.C.PAYNE,S.G.BARTUAL,R.MAZITSCHEK,A.N.BULLOCK JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION ESTABLISHES A JRNL TITL 2 DETAILED UNDERSTANDING OF KEAP1-CUL3 COMPLEX ASSEMBLY. JRNL REF FREE RADIC BIOL MED V. 204 215 2023 JRNL REFN ESSN 1873-4596 JRNL PMID 37156295 JRNL DOI 10.1016/J.FREERADBIOMED.2023.04.021 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3843 - 5.4731 1.00 2729 134 0.1990 0.2593 REMARK 3 2 5.4731 - 4.3458 1.00 2574 136 0.2746 0.2757 REMARK 3 3 4.3458 - 3.7970 1.00 2555 123 0.2787 0.3502 REMARK 3 4 3.7970 - 3.4500 0.99 2521 127 0.3245 0.3943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3936 REMARK 3 ANGLE : 1.438 5294 REMARK 3 CHIRALITY : 0.072 597 REMARK 3 PLANARITY : 0.011 688 REMARK 3 DIHEDRAL : 14.589 2412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -24.2994 30.7683 166.8826 REMARK 3 T TENSOR REMARK 3 T11: 0.9714 T22: 1.4063 REMARK 3 T33: 1.1361 T12: 0.0341 REMARK 3 T13: 0.1823 T23: -0.2905 REMARK 3 L TENSOR REMARK 3 L11: 0.7208 L22: 4.9521 REMARK 3 L33: 2.1668 L12: -0.7499 REMARK 3 L13: 0.4155 L23: -1.3646 REMARK 3 S TENSOR REMARK 3 S11: -0.1615 S12: -0.0386 S13: 0.0103 REMARK 3 S21: 0.4510 S22: 0.2486 S23: -0.3087 REMARK 3 S31: -0.1782 S32: -0.2383 S33: -0.0816 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10899 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.382 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.420 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4AP2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 10% ETHYLENE GLYCOL, 0.2M REMARK 280 POTASSIUM CITRATE TRIBASIC, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 116.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.35500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.35500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 116.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 329.42000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 331 REMARK 465 GLU B 332 REMARK 465 GLY B 333 REMARK 465 GLU B 334 REMARK 465 GLY B 335 REMARK 465 LYS B 336 REMARK 465 ASN B 337 REMARK 465 PRO B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 70 CD1 CD2 REMARK 470 LEU A 72 CD1 CD2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 LEU A 76 CD1 CD2 REMARK 470 GLN A 82 CD OE1 NE2 REMARK 470 VAL A 83 CG1 CG2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 TYR A 85 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 GLN A 92 CD OE1 NE2 REMARK 470 MET A 94 SD CE REMARK 470 LYS A 97 CD CE NZ REMARK 470 VAL A 98 CG2 REMARK 470 SER A 102 OG REMARK 470 SER A 103 OG REMARK 470 VAL A 106 CG1 REMARK 470 LYS A 108 CD CE NZ REMARK 470 THR A 112 CG2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 ARG A 116 CD NE CZ NH1 NH2 REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 VAL A 122 CG2 REMARK 470 ILE A 125 CG2 CD1 REMARK 470 ILE A 128 CG2 CD1 REMARK 470 HIS A 129 ND1 CD2 CE1 NE2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 MET A 133 SD CE REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 136 CD1 CD2 REMARK 470 MET A 147 SD CE REMARK 470 GLU A 149 CD OE1 OE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LEU A 153 CD1 CD2 REMARK 470 HIS A 154 ND1 CD2 CE1 NE2 REMARK 470 VAL A 160 CG1 REMARK 470 GLN A 163 CD OE1 NE2 REMARK 470 ILE A 164 CG2 CD1 REMARK 470 VAL A 167 CG2 REMARK 470 VAL A 168 CG1 REMARK 470 ARG A 169 CD NE CZ NH1 NH2 REMARK 470 SER A 172 OG REMARK 470 ASP A 173 OD1 OD2 REMARK 470 VAL A 176 CG2 REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 GLN A 178 CD OE1 NE2 REMARK 470 ASP A 180 OD1 OD2 REMARK 470 PRO A 181 CD REMARK 470 ASN A 183 CG OD1 ND2 REMARK 470 ILE A 185 CD1 REMARK 470 ASN A 189 OD1 ND2 REMARK 470 PHE A 190 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 GLN A 193 CD OE1 NE2 REMARK 470 ILE A 194 CG2 CD1 REMARK 470 CYS A 196 SG REMARK 470 VAL A 197 CG1 CG2 REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 TYR B 320 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 340 CG OD1 OD2 REMARK 470 TYR B 341 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 74 O GLU B 137 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 236 OE1 GLU B 375 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 187 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 LEU B 225 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 120.70 -179.05 REMARK 500 GLN A 74 47.33 33.49 REMARK 500 LEU A 76 14.99 57.39 REMARK 500 THR A 112 -179.92 -62.60 REMARK 500 ASN A 113 -22.79 -36.33 REMARK 500 LEU A 115 -145.95 -96.04 REMARK 500 GLU A 117 34.60 -81.89 REMARK 500 GLU A 121 -23.12 72.04 REMARK 500 GLN A 163 91.10 61.96 REMARK 500 GLN A 178 39.78 -94.53 REMARK 500 ILE A 194 -53.84 -27.99 REMARK 500 ASN B 48 44.71 -104.95 REMARK 500 LEU B 123 32.57 -97.16 REMARK 500 VAL B 151 -75.84 -118.90 REMARK 500 GLU B 227 -69.53 -124.74 REMARK 500 ILE B 269 -70.34 -109.01 REMARK 500 SER B 282 -18.84 -156.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NLB A 51 204 UNP Q14145 KEAP1_HUMAN 51 204 DBREF 5NLB B 26 381 UNP Q13618 CUL3_HUMAN 26 381 SEQADV 5NLB ARG B 342 UNP Q13618 ILE 342 ENGINEERED MUTATION SEQADV 5NLB ASP B 346 UNP Q13618 LEU 346 ENGINEERED MUTATION SEQRES 1 A 154 THR PHE SER TYR THR LEU GLU ASP HIS THR LYS GLN ALA SEQRES 2 A 154 PHE GLY ILE MET ASN GLU LEU ARG LEU SER GLN GLN LEU SEQRES 3 A 154 CYS ASP VAL THR LEU GLN VAL LYS TYR GLN ASP ALA PRO SEQRES 4 A 154 ALA ALA GLN PHE MET ALA HIS LYS VAL VAL LEU ALA SER SEQRES 5 A 154 SER SER PRO VAL PHE LYS ALA MET PHE THR ASN GLY LEU SEQRES 6 A 154 ARG GLU GLN GLY MET GLU VAL VAL SER ILE GLU GLY ILE SEQRES 7 A 154 HIS PRO LYS VAL MET GLU ARG LEU ILE GLU PHE ALA TYR SEQRES 8 A 154 THR ALA SER ILE SER MET GLY GLU LYS CYS VAL LEU HIS SEQRES 9 A 154 VAL MET ASN GLY ALA VAL MET TYR GLN ILE ASP SER VAL SEQRES 10 A 154 VAL ARG ALA CYS SER ASP PHE LEU VAL GLN GLN LEU ASP SEQRES 11 A 154 PRO SER ASN ALA ILE GLY ILE ALA ASN PHE ALA GLU GLN SEQRES 12 A 154 ILE GLY CYS VAL GLU LEU HIS GLN ARG ALA ARG SEQRES 1 B 356 ASP GLU LYS TYR VAL ASN SER ILE TRP ASP LEU LEU LYS SEQRES 2 B 356 ASN ALA ILE GLN GLU ILE GLN ARG LYS ASN ASN SER GLY SEQRES 3 B 356 LEU SER PHE GLU GLU LEU TYR ARG ASN ALA TYR THR MET SEQRES 4 B 356 VAL LEU HIS LYS HIS GLY GLU LYS LEU TYR THR GLY LEU SEQRES 5 B 356 ARG GLU VAL VAL THR GLU HIS LEU ILE ASN LYS VAL ARG SEQRES 6 B 356 GLU ASP VAL LEU ASN SER LEU ASN ASN ASN PHE LEU GLN SEQRES 7 B 356 THR LEU ASN GLN ALA TRP ASN ASP HIS GLN THR ALA MET SEQRES 8 B 356 VAL MET ILE ARG ASP ILE LEU MET TYR MET ASP ARG VAL SEQRES 9 B 356 TYR VAL GLN GLN ASN ASN VAL GLU ASN VAL TYR ASN LEU SEQRES 10 B 356 GLY LEU ILE ILE PHE ARG ASP GLN VAL VAL ARG TYR GLY SEQRES 11 B 356 CYS ILE ARG ASP HIS LEU ARG GLN THR LEU LEU ASP MET SEQRES 12 B 356 ILE ALA ARG GLU ARG LYS GLY GLU VAL VAL ASP ARG GLY SEQRES 13 B 356 ALA ILE ARG ASN ALA CYS GLN MET LEU MET ILE LEU GLY SEQRES 14 B 356 LEU GLU GLY ARG SER VAL TYR GLU GLU ASP PHE GLU ALA SEQRES 15 B 356 PRO PHE LEU GLU MET SER ALA GLU PHE PHE GLN MET GLU SEQRES 16 B 356 SER GLN LYS PHE LEU ALA GLU ASN SER ALA SER VAL TYR SEQRES 17 B 356 ILE LYS LYS VAL GLU ALA ARG ILE ASN GLU GLU ILE GLU SEQRES 18 B 356 ARG VAL MET HIS CYS LEU ASP LYS SER THR GLU GLU PRO SEQRES 19 B 356 ILE VAL LYS VAL VAL GLU ARG GLU LEU ILE SER LYS HIS SEQRES 20 B 356 MET LYS THR ILE VAL GLU MET GLU ASN SER GLY LEU VAL SEQRES 21 B 356 HIS MET LEU LYS ASN GLY LYS THR GLU ASP LEU GLY CYS SEQRES 22 B 356 MET TYR LYS LEU PHE SER ARG VAL PRO ASN GLY LEU LYS SEQRES 23 B 356 THR MET CYS GLU CYS MET SER SER TYR LEU ARG GLU GLN SEQRES 24 B 356 GLY LYS ALA LEU VAL SER GLU GLU GLY GLU GLY LYS ASN SEQRES 25 B 356 PRO VAL ASP TYR ARG GLN GLY LEU ASP ASP LEU LYS SER SEQRES 26 B 356 ARG PHE ASP ARG PHE LEU LEU GLU SER PHE ASN ASN ASP SEQRES 27 B 356 ARG LEU PHE LYS GLN THR ILE ALA GLY ASP PHE GLU TYR SEQRES 28 B 356 PHE LEU ASN LEU ASN HELIX 1 AA1 GLU A 57 SER A 73 1 17 HELIX 2 AA2 HIS A 96 SER A 104 1 9 HELIX 3 AA3 SER A 104 PHE A 111 1 8 HELIX 4 AA4 HIS A 129 ALA A 143 1 15 HELIX 5 AA5 CYS A 151 GLN A 163 1 13 HELIX 6 AA6 ILE A 164 ASP A 173 1 10 HELIX 7 AA7 ASN A 183 GLY A 195 1 13 HELIX 8 AA8 GLU A 198 ALA A 203 1 6 HELIX 9 AA9 GLU B 27 ARG B 46 1 20 HELIX 10 AB1 SER B 53 HIS B 67 1 15 HELIX 11 AB2 HIS B 69 LYS B 88 1 20 HELIX 12 AB3 LYS B 88 ASN B 95 1 8 HELIX 13 AB4 ASN B 100 LEU B 123 1 24 HELIX 14 AB5 LEU B 123 ASN B 134 1 12 HELIX 15 AB6 ASN B 138 VAL B 151 1 14 HELIX 16 AB7 GLY B 155 LYS B 174 1 20 HELIX 17 AB8 ASP B 179 LEU B 193 1 15 HELIX 18 AB9 ARG B 198 PHE B 205 1 8 HELIX 19 AC1 PHE B 205 GLU B 227 1 23 HELIX 20 AC2 SER B 229 CYS B 251 1 23 HELIX 21 AC3 ASP B 253 SER B 255 5 3 HELIX 22 AC4 THR B 256 ILE B 269 1 14 HELIX 23 AC5 HIS B 272 GLU B 278 1 7 HELIX 24 AC6 GLY B 283 ASN B 290 1 8 HELIX 25 AC7 LYS B 292 SER B 304 1 13 HELIX 26 AC8 ASN B 308 SER B 330 1 23 HELIX 27 AC9 ASP B 340 SER B 359 1 20 HELIX 28 AD1 ASP B 363 ASN B 381 1 19 SHEET 1 AA1 3 ALA A 91 ALA A 95 0 SHEET 2 AA1 3 VAL A 79 VAL A 83 -1 N VAL A 79 O ALA A 95 SHEET 3 AA1 3 VAL A 123 ILE A 125 1 O VAL A 123 N THR A 80 CRYST1 41.000 233.380 164.710 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006071 0.00000