HEADER PLP-BINDING PROTEIN 04-APR-17 5NLC TITLE STRUCTURE OF PIPY, THE COG0325 FAMILY MEMBER OF SYNECHOCOCCUS TITLE 2 ELONGATUS PCC7942,WITHOUT PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIPY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE SEQUENCE PROVIDED HAS A C-TERMINAL HIS6 TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS (STRAIN PCC 7942); SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 GENE: SYNPCC7942_2060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-22B(+)-2060 KEYWDS MODIFIED TIM BARREL, FOLD TYPE III PLP-PROTEIN, VITAMIN B6, PYRIDOXAL KEYWDS 2 PHOSPHATE, PLP-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.TREMINO,A.FORCADA-NADAL,A.CONTRERAS,V.RUBIO REVDAT 6 17-JAN-24 5NLC 1 REMARK REVDAT 5 02-MAY-18 5NLC 1 REMARK SEQRES REVDAT 4 08-NOV-17 5NLC 1 JRNL REVDAT 3 27-SEP-17 5NLC 1 JRNL REVDAT 2 20-SEP-17 5NLC 1 AUTHOR REVDAT 1 13-SEP-17 5NLC 0 JRNL AUTH L.TREMINO,A.FORCADA-NADAL,A.CONTRERAS,V.RUBIO JRNL TITL STUDIES ON CYANOBACTERIAL PROTEIN PIPY SHED LIGHT ON JRNL TITL 2 STRUCTURE, POTENTIAL FUNCTIONS, AND VITAMIN B6 -DEPENDENT JRNL TITL 3 EPILEPSY. JRNL REF FEBS LETT. V. 591 3431 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 28914444 JRNL DOI 10.1002/1873-3468.12841 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3423 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3253 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4664 ; 1.835 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7528 ; 1.043 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;37.075 ;24.040 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 578 ;13.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3828 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1734 ; 1.111 ; 1.544 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1733 ; 1.105 ; 1.542 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2167 ; 1.784 ; 2.308 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2168 ; 1.785 ; 2.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1689 ; 1.700 ; 1.810 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1686 ; 1.687 ; 1.799 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2486 ; 2.730 ; 2.605 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3790 ; 4.980 ;19.483 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3689 ; 4.819 ;18.668 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6340 -10.6190 37.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.1753 REMARK 3 T33: 0.0354 T12: -0.0081 REMARK 3 T13: -0.0032 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.1726 L22: 0.5948 REMARK 3 L33: 4.0487 L12: 0.4134 REMARK 3 L13: -1.0046 L23: -0.9975 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.1051 S13: -0.0329 REMARK 3 S21: 0.0005 S22: 0.1354 S23: -0.0156 REMARK 3 S31: 0.0828 S32: -0.3683 S33: -0.1134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7380 0.6050 35.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.1489 REMARK 3 T33: 0.0309 T12: -0.0068 REMARK 3 T13: -0.0127 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.1757 L22: 0.3638 REMARK 3 L33: 0.7554 L12: 0.3018 REMARK 3 L13: 0.0502 L23: -0.4462 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.0710 S13: 0.0133 REMARK 3 S21: 0.0359 S22: 0.0051 S23: 0.0132 REMARK 3 S31: -0.0685 S32: 0.0021 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9520 1.4550 19.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.1485 REMARK 3 T33: 0.0344 T12: -0.0240 REMARK 3 T13: 0.0083 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 6.9871 L22: 1.7729 REMARK 3 L33: 1.2293 L12: -3.0724 REMARK 3 L13: -0.0826 L23: -0.0826 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0695 S13: 0.1672 REMARK 3 S21: -0.0578 S22: 0.0439 S23: -0.0522 REMARK 3 S31: -0.0473 S32: 0.1548 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3960 -3.9430 27.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.1616 REMARK 3 T33: 0.0384 T12: -0.0095 REMARK 3 T13: -0.0093 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.9699 L22: 1.4033 REMARK 3 L33: 3.4518 L12: -0.0277 REMARK 3 L13: -0.5893 L23: -0.4593 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.0185 S13: -0.1166 REMARK 3 S21: -0.0122 S22: 0.0832 S23: 0.0855 REMARK 3 S31: -0.0438 S32: -0.1911 S33: -0.1347 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5550 -8.2950 4.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.2513 REMARK 3 T33: 0.0633 T12: 0.1155 REMARK 3 T13: -0.0690 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 1.1465 L22: 1.7001 REMARK 3 L33: 5.7919 L12: -1.1228 REMARK 3 L13: -0.7060 L23: -0.2450 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.0071 S13: 0.0187 REMARK 3 S21: 0.1615 S22: 0.1981 S23: -0.0972 REMARK 3 S31: -0.1704 S32: 0.4427 S33: -0.3263 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7840 -3.4750 -3.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.1999 REMARK 3 T33: 0.0111 T12: 0.0347 REMARK 3 T13: 0.0104 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.6893 L22: 1.7220 REMARK 3 L33: 0.7169 L12: -1.9006 REMARK 3 L13: -0.2779 L23: 0.7336 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: 0.3838 S13: 0.0558 REMARK 3 S21: -0.0659 S22: -0.1150 S23: -0.0402 REMARK 3 S31: -0.0832 S32: 0.0236 S33: -0.0457 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1430 0.3620 6.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.1793 REMARK 3 T33: 0.0311 T12: 0.0083 REMARK 3 T13: -0.0020 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5678 L22: 2.3247 REMARK 3 L33: 2.7907 L12: 0.7065 REMARK 3 L13: 1.1556 L23: 1.4846 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0531 S13: 0.0113 REMARK 3 S21: -0.0558 S22: -0.0076 S23: 0.0603 REMARK 3 S31: -0.0263 S32: -0.1155 S33: -0.0115 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 151 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2280 -2.0690 15.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.1584 REMARK 3 T33: 0.0372 T12: 0.0119 REMARK 3 T13: -0.0086 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.3159 L22: 0.4882 REMARK 3 L33: 1.2160 L12: 0.5659 REMARK 3 L13: 0.2618 L23: 0.6453 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.0521 S13: 0.0306 REMARK 3 S21: 0.0642 S22: 0.0381 S23: -0.0234 REMARK 3 S31: 0.1055 S32: 0.0237 S33: -0.0741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1W8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5 0.2 M MAGNESIUM REMARK 280 CHLORIDE 25% (WT/VOL) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.88900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 219 REMARK 465 SER A 220 REMARK 465 LEU A 221 REMARK 465 GLU A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 218 REMARK 465 ARG B 219 REMARK 465 SER B 220 REMARK 465 LEU B 221 REMARK 465 GLU B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 123 CG CD REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ASN B 27 CG OD1 ND2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 338 O HOH B 454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG B 12 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 86 CB - CG - OD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 186 64.84 -104.29 REMARK 500 MET A 194 -166.61 -122.95 REMARK 500 ALA B 126 -164.00 -103.60 REMARK 500 ARG B 186 72.09 -103.73 REMARK 500 LEU B 187 55.58 -94.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 601 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 473 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 474 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 DBREF 5NLC A 1 221 UNP Q31LH9 Q31LH9_SYNE7 1 221 DBREF 5NLC B 1 221 UNP Q31LH9 Q31LH9_SYNE7 1 221 SEQADV 5NLC GLU A 222 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 223 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 224 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 225 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 226 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 227 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS A 228 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC GLU B 222 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 223 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 224 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 225 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 226 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 227 UNP Q31LH9 EXPRESSION TAG SEQADV 5NLC HIS B 228 UNP Q31LH9 EXPRESSION TAG SEQRES 1 A 228 MET ALA GLN ILE ALA GLU ARG LEU ALA SER LEU ARG SER SEQRES 2 A 228 GLN LEU PRO PRO SER VAL GLN LEU ILE ALA VAL SER LYS SEQRES 3 A 228 ASN HIS PRO ALA ALA ALA ILE ARG GLU ALA TYR ALA ALA SEQRES 4 A 228 GLY GLN ARG HIS PHE GLY GLU ASN ARG VAL GLN GLU ALA SEQRES 5 A 228 ILE ALA LYS GLN ALA GLU LEU THR ASP LEU PRO ASP LEU SEQRES 6 A 228 THR TRP HIS LEU LEU GLY LYS LEU GLN SER ASN LYS ALA SEQRES 7 A 228 ARG LYS ALA VAL GLU HIS PHE ASP TRP ILE HIS SER VAL SEQRES 8 A 228 ASP SER TRP ALA LEU ALA GLU ARG LEU ASP ARG ILE ALA SEQRES 9 A 228 GLY GLU LEU GLY ARG SER PRO LYS LEU CYS LEU GLN VAL SEQRES 10 A 228 LYS LEU LEU PRO ASP PRO ASN LYS ALA GLY TRP ASP PRO SEQRES 11 A 228 ALA ASP LEU ARG ALA GLU LEU PRO GLN LEU SER GLN LEU SEQRES 12 A 228 GLN GLN VAL GLN ILE ARG GLY LEU MET VAL ILE ALA PRO SEQRES 13 A 228 LEU GLY LEU THR ALA ALA GLU THR GLN ALA LEU PHE ALA SEQRES 14 A 228 GLN ALA ARG THR PHE ALA ALA GLU LEU GLN GLN GLN ALA SEQRES 15 A 228 PRO GLN LEU ARG LEU THR GLU LEU SER MET GLY MET SER SEQRES 16 A 228 SER ASP TRP PRO LEU ALA VAL ALA GLU GLY ALA THR TRP SEQRES 17 A 228 ILE ARG VAL GLY THR GLN LEU PHE GLY PRO ARG SER LEU SEQRES 18 A 228 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 228 MET ALA GLN ILE ALA GLU ARG LEU ALA SER LEU ARG SER SEQRES 2 B 228 GLN LEU PRO PRO SER VAL GLN LEU ILE ALA VAL SER LYS SEQRES 3 B 228 ASN HIS PRO ALA ALA ALA ILE ARG GLU ALA TYR ALA ALA SEQRES 4 B 228 GLY GLN ARG HIS PHE GLY GLU ASN ARG VAL GLN GLU ALA SEQRES 5 B 228 ILE ALA LYS GLN ALA GLU LEU THR ASP LEU PRO ASP LEU SEQRES 6 B 228 THR TRP HIS LEU LEU GLY LYS LEU GLN SER ASN LYS ALA SEQRES 7 B 228 ARG LYS ALA VAL GLU HIS PHE ASP TRP ILE HIS SER VAL SEQRES 8 B 228 ASP SER TRP ALA LEU ALA GLU ARG LEU ASP ARG ILE ALA SEQRES 9 B 228 GLY GLU LEU GLY ARG SER PRO LYS LEU CYS LEU GLN VAL SEQRES 10 B 228 LYS LEU LEU PRO ASP PRO ASN LYS ALA GLY TRP ASP PRO SEQRES 11 B 228 ALA ASP LEU ARG ALA GLU LEU PRO GLN LEU SER GLN LEU SEQRES 12 B 228 GLN GLN VAL GLN ILE ARG GLY LEU MET VAL ILE ALA PRO SEQRES 13 B 228 LEU GLY LEU THR ALA ALA GLU THR GLN ALA LEU PHE ALA SEQRES 14 B 228 GLN ALA ARG THR PHE ALA ALA GLU LEU GLN GLN GLN ALA SEQRES 15 B 228 PRO GLN LEU ARG LEU THR GLU LEU SER MET GLY MET SER SEQRES 16 B 228 SER ASP TRP PRO LEU ALA VAL ALA GLU GLY ALA THR TRP SEQRES 17 B 228 ILE ARG VAL GLY THR GLN LEU PHE GLY PRO ARG SER LEU SEQRES 18 B 228 GLU HIS HIS HIS HIS HIS HIS HET PO4 A 301 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *375(H2 O) HELIX 1 AA1 GLN A 3 LEU A 15 1 13 HELIX 2 AA2 PRO A 29 ALA A 39 1 11 HELIX 3 AA3 ARG A 48 ALA A 57 1 10 HELIX 4 AA4 GLU A 58 THR A 60 5 3 HELIX 5 AA5 GLN A 74 ASN A 76 5 3 HELIX 6 AA6 LYS A 77 PHE A 85 1 9 HELIX 7 AA7 SER A 93 GLY A 108 1 16 HELIX 8 AA8 ASP A 129 GLN A 142 1 14 HELIX 9 AA9 THR A 160 ALA A 182 1 23 HELIX 10 AB1 ASP A 197 GLU A 204 1 8 HELIX 11 AB2 ILE B 4 GLN B 14 1 11 HELIX 12 AB3 PRO B 29 ALA B 39 1 11 HELIX 13 AB4 ARG B 48 ALA B 57 1 10 HELIX 14 AB5 GLN B 74 ASN B 76 5 3 HELIX 15 AB6 LYS B 77 PHE B 85 1 9 HELIX 16 AB7 SER B 93 GLY B 108 1 16 HELIX 17 AB8 ASP B 129 GLN B 142 1 14 HELIX 18 AB9 THR B 160 ALA B 182 1 23 HELIX 19 AC1 ASP B 197 GLU B 204 1 8 HELIX 20 AC2 GLY B 212 GLY B 217 1 6 SHEET 1 AA1 9 GLN A 20 VAL A 24 0 SHEET 2 AA1 9 HIS A 43 GLU A 46 1 O GLY A 45 N ALA A 23 SHEET 3 AA1 9 THR A 66 LEU A 69 1 O THR A 66 N PHE A 44 SHEET 4 AA1 9 TRP A 87 VAL A 91 1 O HIS A 89 N LEU A 69 SHEET 5 AA1 9 LYS A 112 GLN A 116 1 O LYS A 112 N ILE A 88 SHEET 6 AA1 9 GLN A 147 MET A 152 1 O ARG A 149 N LEU A 113 SHEET 7 AA1 9 GLU A 189 SER A 191 1 O SER A 191 N LEU A 151 SHEET 8 AA1 9 TRP A 208 VAL A 211 1 N TRP A 208 O LEU A 190 SHEET 9 AA1 9 GLN A 20 VAL A 24 1 N ILE A 22 O ILE A 209 SHEET 1 AA2 9 GLN B 20 VAL B 24 0 SHEET 2 AA2 9 HIS B 43 GLU B 46 1 O HIS B 43 N ALA B 23 SHEET 3 AA2 9 THR B 66 LEU B 69 1 O THR B 66 N PHE B 44 SHEET 4 AA2 9 TRP B 87 VAL B 91 1 O HIS B 89 N LEU B 69 SHEET 5 AA2 9 LYS B 112 GLN B 116 1 O LYS B 112 N ILE B 88 SHEET 6 AA2 9 GLN B 147 MET B 152 1 O ARG B 149 N LEU B 113 SHEET 7 AA2 9 GLU B 189 SER B 191 1 O SER B 191 N LEU B 151 SHEET 8 AA2 9 TRP B 208 VAL B 211 1 N TRP B 208 O LEU B 190 SHEET 9 AA2 9 GLN B 20 VAL B 24 1 N ILE B 22 O ILE B 209 SITE 1 AC1 4 ARG A 79 ARG A 99 ARG A 102 ILE A 103 CRYST1 67.618 41.778 77.761 90.00 108.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014789 0.000000 0.004849 0.00000 SCALE2 0.000000 0.023936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013533 0.00000