HEADER IMMUNE SYSTEM 05-APR-17 5NM0 TITLE NB36 SER85CYS WITH HG, CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NB36; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IG DOMAIN LLAMA SINGLE DOMAIN ANTIBODY NANOBODY HG DERIVATIVE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.B.HANSEN,K.R.ANDERSEN,N.S.LAURSEN,G.R.ANDERSEN REVDAT 3 01-NOV-17 5NM0 1 JRNL REVDAT 2 11-OCT-17 5NM0 1 JRNL REMARK REVDAT 1 07-JUN-17 5NM0 0 JRNL AUTH S.B.HANSEN,N.S.LAURSEN,G.R.ANDERSEN,K.R.ANDERSEN JRNL TITL INTRODUCING SITE-SPECIFIC CYSTEINES INTO NANOBODIES FOR JRNL TITL 2 MERCURY LABELLING ALLOWS DE NOVO PHASING OF THEIR CRYSTAL JRNL TITL 3 STRUCTURES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 804 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28994409 JRNL DOI 10.1107/S2059798317013171 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.3355 - 3.6151 1.00 5950 201 0.1785 0.2004 REMARK 3 2 3.6151 - 2.8694 1.00 5776 101 0.1872 0.2237 REMARK 3 3 2.8694 - 2.5066 1.00 5731 101 0.1893 0.2129 REMARK 3 4 2.5066 - 2.2774 1.00 5634 201 0.1814 0.2048 REMARK 3 5 2.2774 - 2.1142 1.00 5657 101 0.1760 0.2052 REMARK 3 6 2.1142 - 1.9895 1.00 5562 202 0.1799 0.1894 REMARK 3 7 1.9895 - 1.8899 1.00 5648 101 0.1887 0.1848 REMARK 3 8 1.8899 - 1.8076 1.00 5551 202 0.1805 0.2107 REMARK 3 9 1.8076 - 1.7380 1.00 5654 101 0.1909 0.2132 REMARK 3 10 1.7380 - 1.6780 1.00 5624 101 0.2023 0.2598 REMARK 3 11 1.6780 - 1.6256 1.00 5505 202 0.2212 0.2643 REMARK 3 12 1.6256 - 1.5791 1.00 5612 101 0.2457 0.2612 REMARK 3 13 1.5791 - 1.5375 1.00 5535 202 0.2770 0.3109 REMARK 3 14 1.5375 - 1.5000 1.00 5550 101 0.3097 0.2900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3550 REMARK 3 ANGLE : 0.781 4811 REMARK 3 CHIRALITY : 0.053 545 REMARK 3 PLANARITY : 0.005 617 REMARK 3 DIHEDRAL : 9.554 2123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 6.1887 47.4452 101.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.1766 REMARK 3 T33: 0.1782 T12: -0.0084 REMARK 3 T13: -0.0260 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1872 L22: 1.6342 REMARK 3 L33: 1.7385 L12: 0.2416 REMARK 3 L13: -0.4291 L23: 0.2942 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.0545 S13: 0.0100 REMARK 3 S21: -0.0182 S22: 0.0421 S23: -0.0120 REMARK 3 S31: -0.1899 S32: 0.0777 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -3.9027 -19.4708 98.3425 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.1417 REMARK 3 T33: 0.1569 T12: 0.0024 REMARK 3 T13: -0.0012 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.4646 L22: 2.3983 REMARK 3 L33: 1.7788 L12: -0.0913 REMARK 3 L13: 0.1035 L23: 0.4090 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0629 S13: -0.0211 REMARK 3 S21: -0.0672 S22: -0.0075 S23: 0.0511 REMARK 3 S31: 0.0371 S32: -0.0582 S33: -0.0036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -2.7700 26.7830 83.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.2013 REMARK 3 T33: 0.1646 T12: -0.0072 REMARK 3 T13: 0.0016 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.4774 L22: 1.2486 REMARK 3 L33: 2.0833 L12: -0.3421 REMARK 3 L13: 0.8851 L23: 0.4426 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0326 S13: -0.1190 REMARK 3 S21: -0.0208 S22: -0.0175 S23: 0.0756 REMARK 3 S31: 0.0710 S32: -0.1747 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 7.0596 2.9902 82.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.1612 REMARK 3 T33: 0.1725 T12: -0.0121 REMARK 3 T13: 0.0227 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.0811 L22: 1.9667 REMARK 3 L33: 2.3692 L12: -0.1530 REMARK 3 L13: -0.5253 L23: -0.9131 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0505 S13: 0.0550 REMARK 3 S21: -0.2679 S22: -0.0740 S23: -0.1635 REMARK 3 S31: -0.0459 S32: 0.0866 S33: -0.0176 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 102 OR REMARK 3 RESID 108 THROUGH 118)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 102 OR REMARK 3 RESID 108 THROUGH 118)) REMARK 3 ATOM PAIRS NUMBER : 2498 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 102 OR REMARK 3 RESID 108 THROUGH 118)) REMARK 3 SELECTION : (CHAIN C AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 118)) REMARK 3 ATOM PAIRS NUMBER : 2498 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 102 OR REMARK 3 RESID 108 THROUGH 118)) REMARK 3 SELECTION : (CHAIN D AND (RESID 3 THROUGH 22 OR RESID REMARK 3 24 THROUGH 95 OR RESID 97 THROUGH 102 OR REMARK 3 RESID 108 THROUGH 118)) REMARK 3 ATOM PAIRS NUMBER : 2498 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 71.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.390 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.32 REMARK 200 R MERGE FOR SHELL (I) : 1.07500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 25% W/V PEG 3350, REMARK 280 PH 3.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 MET B 1 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 THR C 103 REMARK 465 MET C 104 REMARK 465 SER C 105 REMARK 465 ASN C 106 REMARK 465 ALA C 107 REMARK 465 SER C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 MET D 1 REMARK 465 GLN D 2 REMARK 465 SER D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 HIS D 122 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 465 HIS D 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER C 55 O HOH C 201 1.55 REMARK 500 O HOH A 367 O HOH A 373 1.68 REMARK 500 O HOH C 268 O HOH D 258 1.89 REMARK 500 O HOH A 303 O HOH A 378 1.90 REMARK 500 OG SER C 55 O HOH C 201 1.92 REMARK 500 OG SER A 26 O HOH A 301 1.92 REMARK 500 O HOH B 336 O HOH B 388 1.98 REMARK 500 O HOH D 241 O HOH D 258 2.00 REMARK 500 O HOH B 326 O HOH B 384 2.01 REMARK 500 O HOH D 213 O HOH D 241 2.02 REMARK 500 O HOH B 309 O HOH B 388 2.07 REMARK 500 O HOH C 248 O HOH C 279 2.07 REMARK 500 O HOH B 316 O HOH B 401 2.07 REMARK 500 O HOH B 303 O HOH B 308 2.08 REMARK 500 OD1 ASN D 59 O HOH D 201 2.09 REMARK 500 OE1 GLN C 114 O HOH C 202 2.10 REMARK 500 O HOH B 399 O HOH B 406 2.15 REMARK 500 O SER A 26 O HOH A 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH B 405 3556 2.09 REMARK 500 O HOH C 259 O HOH D 249 4456 2.13 REMARK 500 O HOH A 367 O HOH B 405 3556 2.14 REMARK 500 O PRO C 42 ND2 ASN D 106 4456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 96 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 166.42 178.36 REMARK 500 ASN B 54 74.07 -59.15 REMARK 500 SER B 55 -19.00 177.14 REMARK 500 ALA B 92 166.88 179.02 REMARK 500 ALA C 92 165.73 178.20 REMARK 500 ALA D 92 166.81 178.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NLU RELATED DB: PDB REMARK 900 OTHER CRYSTALS FORM OF NB36 AND NOT CONTAINING A SERINE INSTEAD OF REMARK 900 A CYSTEINE AT POSITION 85 REMARK 900 RELATED ID: 5NLW RELATED DB: PDB DBREF 5NM0 A 1 125 PDB 5NM0 5NM0 1 125 DBREF 5NM0 B 1 125 PDB 5NM0 5NM0 1 125 DBREF 5NM0 C 1 125 PDB 5NM0 5NM0 1 125 DBREF 5NM0 D 1 125 PDB 5NM0 5NM0 1 125 SEQRES 1 A 125 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 A 125 GLN ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER SEQRES 3 A 125 GLY SER ALA VAL SER ASP TYR ALA MET GLY TRP TYR ARG SEQRES 4 A 125 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 A 125 TYR ASN SER GLY ARG THR ASN TYR VAL ASP SER VAL LYS SEQRES 6 A 125 GLY ARG PHE THR ILE SER LYS ASP ASN ALA LYS LYS THR SEQRES 7 A 125 VAL TYR LEU GLN MET ASN CYS LEU LYS PRO GLU ASP THR SEQRES 8 A 125 ALA ASP TYR PHE CYS ASN LEU LEU GLY ALA THR THR MET SEQRES 9 A 125 SER ASN ALA VAL TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 A 125 SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 125 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 B 125 GLN ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER SEQRES 3 B 125 GLY SER ALA VAL SER ASP TYR ALA MET GLY TRP TYR ARG SEQRES 4 B 125 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 B 125 TYR ASN SER GLY ARG THR ASN TYR VAL ASP SER VAL LYS SEQRES 6 B 125 GLY ARG PHE THR ILE SER LYS ASP ASN ALA LYS LYS THR SEQRES 7 B 125 VAL TYR LEU GLN MET ASN CYS LEU LYS PRO GLU ASP THR SEQRES 8 B 125 ALA ASP TYR PHE CYS ASN LEU LEU GLY ALA THR THR MET SEQRES 9 B 125 SER ASN ALA VAL TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 B 125 SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 125 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 C 125 GLN ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER SEQRES 3 C 125 GLY SER ALA VAL SER ASP TYR ALA MET GLY TRP TYR ARG SEQRES 4 C 125 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 C 125 TYR ASN SER GLY ARG THR ASN TYR VAL ASP SER VAL LYS SEQRES 6 C 125 GLY ARG PHE THR ILE SER LYS ASP ASN ALA LYS LYS THR SEQRES 7 C 125 VAL TYR LEU GLN MET ASN CYS LEU LYS PRO GLU ASP THR SEQRES 8 C 125 ALA ASP TYR PHE CYS ASN LEU LEU GLY ALA THR THR MET SEQRES 9 C 125 SER ASN ALA VAL TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 C 125 SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 125 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 D 125 GLN ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER SEQRES 3 D 125 GLY SER ALA VAL SER ASP TYR ALA MET GLY TRP TYR ARG SEQRES 4 D 125 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 D 125 TYR ASN SER GLY ARG THR ASN TYR VAL ASP SER VAL LYS SEQRES 6 D 125 GLY ARG PHE THR ILE SER LYS ASP ASN ALA LYS LYS THR SEQRES 7 D 125 VAL TYR LEU GLN MET ASN CYS LEU LYS PRO GLU ASP THR SEQRES 8 D 125 ALA ASP TYR PHE CYS ASN LEU LEU GLY ALA THR THR MET SEQRES 9 D 125 SER ASN ALA VAL TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 D 125 SER SER HIS HIS HIS HIS HIS HIS HET HG A 201 1 HET HG B 201 1 HETNAM HG MERCURY (II) ION FORMUL 5 HG 2(HG 2+) FORMUL 7 HOH *379(H2 O) HELIX 1 AA1 SER A 28 TYR A 33 1 6 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 LYS A 87 THR A 91 5 5 HELIX 4 AA4 SER B 28 TYR B 33 1 6 HELIX 5 AA5 ASP B 62 LYS B 65 5 4 HELIX 6 AA6 LYS B 87 THR B 91 5 5 HELIX 7 AA7 SER C 28 TYR C 33 1 6 HELIX 8 AA8 ASP C 62 LYS C 65 5 4 HELIX 9 AA9 LYS C 87 THR C 91 5 5 HELIX 10 AB1 SER D 28 TYR D 33 1 6 HELIX 11 AB2 ASP D 62 LYS D 65 5 4 HELIX 12 AB3 LYS D 87 THR D 91 5 5 HELIX 13 AB4 GLY D 100 MET D 104 5 5 SHEET 1 AA1 4 LEU A 5 SER A 8 0 SHEET 2 AA1 4 LEU A 19 VAL A 25 -1 O SER A 22 N SER A 8 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 19 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 LEU A 12 GLN A 14 0 SHEET 2 AA2 6 THR A 113 SER A 118 1 O THR A 116 N VAL A 13 SHEET 3 AA2 6 ALA A 92 LEU A 98 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 MET A 35 GLN A 40 -1 N TYR A 38 O PHE A 95 SHEET 5 AA2 6 GLU A 47 ILE A 52 -1 O ILE A 52 N MET A 35 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ASN A 59 N ALA A 51 SHEET 1 AA3 4 LEU B 5 SER B 8 0 SHEET 2 AA3 4 LEU B 19 VAL B 25 -1 O SER B 22 N SER B 8 SHEET 3 AA3 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 19 SHEET 4 AA3 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA4 6 LEU B 12 GLN B 14 0 SHEET 2 AA4 6 THR B 113 SER B 118 1 O SER B 118 N VAL B 13 SHEET 3 AA4 6 ALA B 92 LEU B 98 -1 N ALA B 92 O VAL B 115 SHEET 4 AA4 6 MET B 35 GLN B 40 -1 N TYR B 38 O PHE B 95 SHEET 5 AA4 6 GLU B 47 ILE B 52 -1 O VAL B 49 N TRP B 37 SHEET 6 AA4 6 THR B 58 TYR B 60 -1 O ASN B 59 N ALA B 51 SHEET 1 AA5 4 LEU C 5 SER C 8 0 SHEET 2 AA5 4 LEU C 19 VAL C 25 -1 O SER C 22 N SER C 8 SHEET 3 AA5 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 19 SHEET 4 AA5 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 AA6 6 GLY C 11 GLN C 14 0 SHEET 2 AA6 6 THR C 113 SER C 118 1 O SER C 118 N VAL C 13 SHEET 3 AA6 6 ALA C 92 LEU C 98 -1 N ALA C 92 O VAL C 115 SHEET 4 AA6 6 MET C 35 GLN C 40 -1 N TYR C 38 O PHE C 95 SHEET 5 AA6 6 GLU C 47 ILE C 52 -1 O ILE C 52 N MET C 35 SHEET 6 AA6 6 THR C 58 TYR C 60 -1 O ASN C 59 N ALA C 51 SHEET 1 AA7 4 LEU D 5 SER D 8 0 SHEET 2 AA7 4 LEU D 19 VAL D 25 -1 O SER D 22 N SER D 8 SHEET 3 AA7 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 19 SHEET 4 AA7 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA8 6 GLY D 11 GLN D 14 0 SHEET 2 AA8 6 THR D 113 SER D 118 1 O THR D 116 N VAL D 13 SHEET 3 AA8 6 ALA D 92 LEU D 98 -1 N TYR D 94 O THR D 113 SHEET 4 AA8 6 MET D 35 GLN D 40 -1 N TYR D 38 O PHE D 95 SHEET 5 AA8 6 GLU D 47 ILE D 52 -1 O VAL D 49 N TRP D 37 SHEET 6 AA8 6 THR D 58 TYR D 60 -1 O ASN D 59 N ALA D 51 SSBOND 1 CYS A 23 CYS A 96 1555 1555 2.03 SSBOND 2 CYS B 23 CYS B 96 1555 1555 2.03 SSBOND 3 CYS C 23 CYS C 96 1555 1555 2.04 SSBOND 4 CYS D 23 CYS D 96 1555 1555 2.03 LINK HG HG A 201 O HOH C 281 1555 1555 3.02 LINK HG HG B 201 O HOH D 266 1555 1555 2.91 SITE 1 AC1 3 CYS A 85 CYS C 85 HOH C 281 SITE 1 AC2 3 CYS B 85 CYS D 85 HOH D 266 CRYST1 37.610 93.070 142.510 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007017 0.00000