HEADER HYDROLASE 05-APR-17 5NM7 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA AP3 PHAGE ENDOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN-BINDING DOMAIN 1; COMPND 3 CHAIN: G, A; COMPND 4 SYNONYM: AP3 ENDOLYSIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA; SOURCE 3 ORGANISM_TAXID: 32008; SOURCE 4 GENE: MYA_3986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDOGLYCAN BINDING DOMAIN, LYSOZYME FAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZRUBEK,M.WISNIEWSKA,K.REMBACZ,B.MACIEJEWSKA,Z.DRULIS-KAWA,G.DUBIN REVDAT 1 14-FEB-18 5NM7 0 JRNL AUTH B.MACIEJEWSKA,K.ZRUBEK,A.ESPAILLAT,M.WISNIEWSKA,K.P.REMBACZ, JRNL AUTH 2 F.CAVA,G.DUBIN,Z.DRULIS-KAWA JRNL TITL MODULAR ENDOLYSIN OF BURKHOLDERIA AP3 PHAGE HAS THE LARGEST JRNL TITL 2 LYSOZYME-LIKE CATALYTIC SUBUNIT DISCOVERED TO DATE AND NO JRNL TITL 3 CATALYTIC ASPARTATE RESIDUE. JRNL REF SCI REP V. 7 14501 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29109551 JRNL DOI 10.1038/S41598-017-14797-9 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4100 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3937 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5534 ; 1.403 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8964 ; 1.293 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 5.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;30.544 ;22.287 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;12.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;21.679 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4739 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1007 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2097 ; 1.898 ; 2.726 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2081 ; 1.888 ; 2.722 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2609 ; 2.780 ; 4.073 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2600 ; 2.782 ; 4.075 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2001 ; 2.602 ; 3.031 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2002 ; 2.602 ; 3.031 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2926 ; 4.106 ; 4.423 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4849 ; 5.294 ;22.081 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4850 ; 5.294 ;22.085 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 G 3 263 A 3 263 29930 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 26.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG PH 7.0, 25% PEG 1500, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 77.30750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.63351 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.94100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 77.30750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.63351 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.94100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 77.30750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.63351 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.94100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 77.30750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.63351 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.94100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 77.30750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.63351 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.94100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 77.30750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.63351 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.94100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.26701 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.88200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 89.26701 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 83.88200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 89.26701 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 83.88200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 89.26701 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.88200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 89.26701 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 83.88200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 89.26701 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 83.88200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH G 480 LIES ON A SPECIAL POSITION. REMARK 375 HOH G 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 1 REMARK 465 LEU G 131 REMARK 465 ASP G 132 REMARK 465 ALA G 133 REMARK 465 ASP G 134 REMARK 465 ALA G 135 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 LEU A 131 REMARK 465 ASP A 132 REMARK 465 ALA A 133 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG G 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 235 CE NZ REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN G 88 O HOH G 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG G 39 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG G 160 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 154 -145.16 57.11 REMARK 500 SER G 168 117.59 -163.26 REMARK 500 ASP A 154 -144.88 57.81 REMARK 500 SER A 168 116.20 -163.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY G 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY G 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY G 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE G 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 302 DBREF 5NM7 G 1 266 PDB 5NM7 5NM7 1 266 DBREF 5NM7 A 1 266 PDB 5NM7 5NM7 1 266 SEQRES 1 G 266 MET TYR LYS THR LEU ARG LEU GLY ASP ARG GLY ALA ASP SEQRES 2 G 266 VAL SER TYR LEU GLN ARG GLN LEU ILE ALA ALA GLY ALA SEQRES 3 G 266 ARG LEU ASP ILE ASP ALA ILE TYR GLY SER ALA THR ARG SEQRES 4 G 266 ASP ALA VAL MET ALA PHE GLN ALA THR HIS GLY LEU VAL SEQRES 5 G 266 ALA ASP GLY ILE ALA GLY PRO LYS THR TRP SER THR LEU SEQRES 6 G 266 SER ALA GLY ARG ARG ASP PRO ARG HIS LEU THR ASP ALA SEQRES 7 G 266 ASP LEU GLN ARG ALA ALA ASP ARG LEU GLN VAL ASP LEU SEQRES 8 G 266 ALA ALA VAL ARG ALA VAL ASN GLU VAL GLU SER LYS GLY SEQRES 9 G 266 ALA GLY PHE LEU PRO ASP GLY ARG PRO VAL ILE LEU TYR SEQRES 10 G 266 GLU ARG HIS ILE MET TYR ARG GLN LEU ALA ALA ALA GLY SEQRES 11 G 266 LEU ASP ALA ASP ALA LEU ALA ALA LYS TYR PRO ALA LEU SEQRES 12 G 266 VAL ASN SER LYS ARG GLY GLY TYR ALA GLY ASP ALA ALA SEQRES 13 G 266 GLU TYR ALA ARG LEU ALA SER ALA SER GLN ILE SER GLY SEQRES 14 G 266 ALA CYS ALA LEU GLU ALA THR SER TRP GLY ALA PHE GLN SEQRES 15 G 266 ILE MET GLY PHE HIS TRP LYS ALA LEU GLY TYR PRO ASP SEQRES 16 G 266 VAL PHE ALA PHE VAL ASP ALA MET LYS VAL SER GLU ALA SEQRES 17 G 266 GLU GLN LEU GLU ALA PHE VAL ARG PHE VAL LEU ALA ASP SEQRES 18 G 266 LYS VAL MET LEU ALA ALA LEU ARG SER LYS LYS TRP ALA SEQRES 19 G 266 LYS PHE ALA GLU LEU TYR ASN GLY LYS ALA TYR ALA GLU SEQRES 20 G 266 ASN LEU TYR ASP VAL LYS LEU GLU ARG ALA PHE ASP ARG SEQRES 21 G 266 TYR SER ARG ALA ALA ALA SEQRES 1 A 266 MET TYR LYS THR LEU ARG LEU GLY ASP ARG GLY ALA ASP SEQRES 2 A 266 VAL SER TYR LEU GLN ARG GLN LEU ILE ALA ALA GLY ALA SEQRES 3 A 266 ARG LEU ASP ILE ASP ALA ILE TYR GLY SER ALA THR ARG SEQRES 4 A 266 ASP ALA VAL MET ALA PHE GLN ALA THR HIS GLY LEU VAL SEQRES 5 A 266 ALA ASP GLY ILE ALA GLY PRO LYS THR TRP SER THR LEU SEQRES 6 A 266 SER ALA GLY ARG ARG ASP PRO ARG HIS LEU THR ASP ALA SEQRES 7 A 266 ASP LEU GLN ARG ALA ALA ASP ARG LEU GLN VAL ASP LEU SEQRES 8 A 266 ALA ALA VAL ARG ALA VAL ASN GLU VAL GLU SER LYS GLY SEQRES 9 A 266 ALA GLY PHE LEU PRO ASP GLY ARG PRO VAL ILE LEU TYR SEQRES 10 A 266 GLU ARG HIS ILE MET TYR ARG GLN LEU ALA ALA ALA GLY SEQRES 11 A 266 LEU ASP ALA ASP ALA LEU ALA ALA LYS TYR PRO ALA LEU SEQRES 12 A 266 VAL ASN SER LYS ARG GLY GLY TYR ALA GLY ASP ALA ALA SEQRES 13 A 266 GLU TYR ALA ARG LEU ALA SER ALA SER GLN ILE SER GLY SEQRES 14 A 266 ALA CYS ALA LEU GLU ALA THR SER TRP GLY ALA PHE GLN SEQRES 15 A 266 ILE MET GLY PHE HIS TRP LYS ALA LEU GLY TYR PRO ASP SEQRES 16 A 266 VAL PHE ALA PHE VAL ASP ALA MET LYS VAL SER GLU ALA SEQRES 17 A 266 GLU GLN LEU GLU ALA PHE VAL ARG PHE VAL LEU ALA ASP SEQRES 18 A 266 LYS VAL MET LEU ALA ALA LEU ARG SER LYS LYS TRP ALA SEQRES 19 A 266 LYS PHE ALA GLU LEU TYR ASN GLY LYS ALA TYR ALA GLU SEQRES 20 A 266 ASN LEU TYR ASP VAL LYS LEU GLU ARG ALA PHE ASP ARG SEQRES 21 A 266 TYR SER ARG ALA ALA ALA HET GLY G 301 5 HET GLY G 302 5 HET GLY G 303 5 HET PGE G 304 10 HET GLY A 301 5 HET GLY A 302 5 HETNAM GLY GLYCINE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 GLY 5(C2 H5 N O2) FORMUL 6 PGE C6 H14 O4 FORMUL 9 HOH *180(H2 O) HELIX 1 AA1 GLY G 11 ALA G 24 1 14 HELIX 2 AA2 GLY G 35 HIS G 49 1 15 HELIX 3 AA3 GLY G 58 GLY G 68 1 11 HELIX 4 AA4 THR G 76 GLN G 88 1 13 HELIX 5 AA5 ASP G 90 SER G 102 1 13 HELIX 6 AA6 GLU G 118 ALA G 129 1 12 HELIX 7 AA7 ALA G 155 SER G 168 1 14 HELIX 8 AA8 SER G 168 ALA G 175 1 8 HELIX 9 AA9 PHE G 186 TRP G 188 5 3 HELIX 10 AB1 ASP G 195 SER G 206 1 12 HELIX 11 AB2 SER G 206 ALA G 220 1 15 HELIX 12 AB3 ASP G 221 SER G 230 1 10 HELIX 13 AB4 LYS G 232 GLY G 242 1 11 HELIX 14 AB5 LEU G 249 ALA G 266 1 18 HELIX 15 AB6 GLY A 11 ALA A 24 1 14 HELIX 16 AB7 GLY A 35 HIS A 49 1 15 HELIX 17 AB8 GLY A 58 GLY A 68 1 11 HELIX 18 AB9 THR A 76 GLN A 88 1 13 HELIX 19 AC1 ASP A 90 SER A 102 1 13 HELIX 20 AC2 GLU A 118 GLY A 130 1 13 HELIX 21 AC3 ALA A 135 TYR A 140 1 6 HELIX 22 AC4 ALA A 155 SER A 168 1 14 HELIX 23 AC5 SER A 168 ALA A 175 1 8 HELIX 24 AC6 PHE A 186 LYS A 189 5 4 HELIX 25 AC7 ASP A 195 SER A 206 1 12 HELIX 26 AC8 SER A 206 ALA A 220 1 15 HELIX 27 AC9 ASP A 221 SER A 230 1 10 HELIX 28 AD1 LYS A 232 GLY A 242 1 11 HELIX 29 AD2 ALA A 244 ASN A 248 5 5 HELIX 30 AD3 LEU A 249 ALA A 264 1 16 SHEET 1 AA1 3 ILE G 115 TYR G 117 0 SHEET 2 AA1 3 THR G 176 TRP G 178 -1 O SER G 177 N LEU G 116 SHEET 3 AA1 3 ILE G 183 MET G 184 -1 O ILE G 183 N TRP G 178 SHEET 1 AA2 3 ILE A 115 TYR A 117 0 SHEET 2 AA2 3 THR A 176 TRP A 178 -1 O SER A 177 N LEU A 116 SHEET 3 AA2 3 ILE A 183 MET A 184 -1 O ILE A 183 N TRP A 178 SITE 1 AC1 8 GLN G 46 ASP G 54 ILE G 56 GLY G 58 SITE 2 AC1 8 PRO G 59 LYS G 60 THR G 61 HOH G 411 SITE 1 AC2 7 ASP G 31 ILE G 33 GLY G 35 SER G 36 SITE 2 AC2 7 ALA G 37 THR G 38 HOH G 427 SITE 1 AC3 4 ALA G 208 LEU G 211 GLU G 212 HOH G 404 SITE 1 AC4 6 TYR G 158 LEU G 173 VAL G 200 ASP G 201 SITE 2 AC4 6 LYS G 204 HOH G 462 SITE 1 AC5 9 GLN A 46 ASP A 54 ILE A 56 GLY A 58 SITE 2 AC5 9 PRO A 59 LYS A 60 THR A 61 HOH A 410 SITE 3 AC5 9 HOH A 411 SITE 1 AC6 7 ASP A 31 ILE A 33 GLY A 35 SER A 36 SITE 2 AC6 7 ALA A 37 THR A 38 HOH A 423 CRYST1 154.615 154.615 125.823 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006468 0.003734 0.000000 0.00000 SCALE2 0.000000 0.007468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007948 0.00000