HEADER SUGAR BINDING PROTEIN 06-APR-17 5NMJ TITLE CHICKEN GRIFIN (CRYSTALLISATION PH: 6.5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: GRIFIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN RELATED PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.M.RUIZ,A.ROMERO REVDAT 4 17-JAN-24 5NMJ 1 HETSYN REVDAT 3 29-JUL-20 5NMJ 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 21-FEB-18 5NMJ 1 JRNL REVDAT 1 14-FEB-18 5NMJ 0 JRNL AUTH F.M.RUIZ,U.GILLES,A.K.LUDWIG,C.SEHAD,T.C.SHIAO, JRNL AUTH 2 G.GARCIA CABALLERO,H.KALTNER,I.LINDNER,R.ROY,D.REUSCH, JRNL AUTH 3 A.ROMERO,H.J.GABIUS JRNL TITL CHICKEN GRIFIN: STRUCTURAL CHARACTERIZATION IN CRYSTALS AND JRNL TITL 2 IN SOLUTION. JRNL REF BIOCHIMIE V. 146 127 2018 JRNL REFN ISSN 1638-6183 JRNL PMID 29248541 JRNL DOI 10.1016/J.BIOCHI.2017.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4053 - 3.0132 1.00 2637 167 0.1490 0.1789 REMARK 3 2 3.0132 - 2.3918 1.00 2523 141 0.1647 0.1959 REMARK 3 3 2.3918 - 2.0894 1.00 2501 122 0.1513 0.2034 REMARK 3 4 2.0894 - 1.8984 1.00 2475 140 0.1470 0.1877 REMARK 3 5 1.8984 - 1.7623 1.00 2440 136 0.1595 0.1944 REMARK 3 6 1.7623 - 1.6584 1.00 2467 121 0.1790 0.1991 REMARK 3 7 1.6584 - 1.5754 1.00 2434 138 0.1856 0.2305 REMARK 3 8 1.5754 - 1.5068 1.00 2469 107 0.2139 0.2417 REMARK 3 9 1.5068 - 1.4488 1.00 2409 141 0.2476 0.2886 REMARK 3 10 1.4488 - 1.3988 0.98 2379 121 0.2956 0.3143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1209 REMARK 3 ANGLE : 0.859 1646 REMARK 3 CHIRALITY : 0.095 180 REMARK 3 PLANARITY : 0.006 210 REMARK 3 DIHEDRAL : 16.562 448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1910 -11.5969 -16.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.1043 REMARK 3 T33: 0.0953 T12: 0.0095 REMARK 3 T13: -0.0092 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.1275 L22: 1.8873 REMARK 3 L33: 3.7431 L12: -0.6571 REMARK 3 L13: -1.4078 L23: 1.3107 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.0264 S13: 0.0423 REMARK 3 S21: 0.0156 S22: -0.0643 S23: 0.0152 REMARK 3 S31: -0.0984 S32: -0.0307 S33: 0.0261 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2813 -18.0632 -13.5851 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0910 REMARK 3 T33: 0.0993 T12: 0.0050 REMARK 3 T13: 0.0048 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.0957 L22: 2.5016 REMARK 3 L33: 3.1674 L12: 0.4284 REMARK 3 L13: 0.3697 L23: 1.6944 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: 0.0362 S13: -0.0216 REMARK 3 S21: -0.0160 S22: 0.0032 S23: -0.1206 REMARK 3 S31: -0.0589 S32: 0.1268 S33: -0.0516 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1540 -30.1523 -17.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.0943 REMARK 3 T33: 0.1719 T12: 0.0089 REMARK 3 T13: 0.0273 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.4719 L22: 2.2148 REMARK 3 L33: 6.6817 L12: 0.3951 REMARK 3 L13: 3.0012 L23: 0.6279 REMARK 3 S TENSOR REMARK 3 S11: 0.2316 S12: -0.0676 S13: -0.2017 REMARK 3 S21: 0.0740 S22: -0.0450 S23: -0.1018 REMARK 3 S31: 0.7743 S32: -0.1203 S33: -0.2932 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5175 -22.1870 -9.1938 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.0933 REMARK 3 T33: 0.1133 T12: 0.0029 REMARK 3 T13: 0.0075 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.4450 L22: 3.3031 REMARK 3 L33: 8.7163 L12: -0.2866 REMARK 3 L13: -0.5580 L23: 3.1728 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0272 S13: -0.0164 REMARK 3 S21: 0.1261 S22: -0.0877 S23: 0.0721 REMARK 3 S31: 0.0838 S32: -0.1768 S33: 0.0727 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2888 -19.8515 -3.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0881 REMARK 3 T33: 0.0923 T12: 0.0023 REMARK 3 T13: 0.0084 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.8358 L22: 6.3626 REMARK 3 L33: 3.4841 L12: 2.4561 REMARK 3 L13: 1.3635 L23: 3.5350 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: -0.1085 S13: -0.0456 REMARK 3 S21: 0.4132 S22: -0.0892 S23: -0.0087 REMARK 3 S31: 0.2212 S32: -0.0475 S33: 0.0014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9650 -9.5146 -12.5077 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.1032 REMARK 3 T33: 0.1111 T12: 0.0057 REMARK 3 T13: 0.0003 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.1005 L22: 3.3393 REMARK 3 L33: 5.3113 L12: -2.6458 REMARK 3 L13: -3.3341 L23: 4.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.1962 S12: 0.0454 S13: 0.0961 REMARK 3 S21: -0.2528 S22: -0.1410 S23: -0.0839 REMARK 3 S31: -0.4355 S32: -0.1661 S33: -0.0882 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2208 -16.3643 -19.1151 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0784 REMARK 3 T33: 0.0998 T12: -0.0184 REMARK 3 T13: 0.0017 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.5844 L22: 2.6648 REMARK 3 L33: 3.3209 L12: -1.1208 REMARK 3 L13: -0.6742 L23: 1.5926 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.1626 S13: -0.1344 REMARK 3 S21: 0.0463 S22: -0.1723 S23: 0.1722 REMARK 3 S31: 0.0907 S32: -0.3916 S33: 0.2365 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.399 REMARK 200 RESOLUTION RANGE LOW (A) : 40.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5NLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1 M MES PH 6.5, 0.1 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.38850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.38850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.57450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.38850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.38850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.57450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.38850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.38850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.57450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.38850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.38850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.57450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.14900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 LEU A 139 REMARK 465 TYR A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 443 O HOH A 465 2.00 REMARK 500 O HOH A 313 O HOH A 436 2.08 REMARK 500 OG SER A 27 OE2 GLU A 128 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 14 40.16 -107.36 REMARK 500 SER A 31 -146.91 -119.24 REMARK 500 PRO A 78 36.66 -88.50 REMARK 500 ASP A 92 -165.47 -113.06 REMARK 500 ASN A 125 -136.20 78.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NMJ A 2 140 UNP F1NZ18 F1NZ18_CHICK 1 139 SEQRES 1 A 139 MET ALA LEU ARG PHE GLU ALA LEU TYR PRO GLU GLY MET SEQRES 2 A 139 CYS PRO GLY TRP SER VAL VAL VAL LYS GLY LYS THR SER SEQRES 3 A 139 SER ASN THR SER MET PHE GLU ILE ASN PHE LEU SER HIS SEQRES 4 A 139 PRO GLY ASP GLN ILE ALA PHE HIS PHE ASN PRO ARG PHE SEQRES 5 A 139 ALA SER SER ARG ILE VAL CYS ASN SER PHE LEU ALA ASN SEQRES 6 A 139 HIS TRP GLY LYS GLU GLU VAL ASN LYS THR PHE PRO PHE SEQRES 7 A 139 GLU ALA LYS GLU PRO PHE GLN VAL GLU ILE TYR SER ASP SEQRES 8 A 139 GLN ASP TYR PHE HIS ILE PHE ILE ASP GLU ASN LYS ILE SEQRES 9 A 139 LEU GLN TYR LYS HIS ARG GLN LYS GLN LEU SER SER ILE SEQRES 10 A 139 THR LYS LEU GLN ILE LEU ASN ASP ILE GLU ILE SER SER SEQRES 11 A 139 VAL GLU ILE THR LYS ARG GLY LEU TYR HET GLC B 1 23 HET GAL B 2 22 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 HOH *170(H2 O) HELIX 1 AA1 GLN A 114 SER A 116 5 3 SHEET 1 AA1 6 LEU A 4 LEU A 9 0 SHEET 2 AA1 6 ILE A 118 ASN A 125 -1 O ILE A 123 N ARG A 5 SHEET 3 AA1 6 PHE A 33 SER A 39 -1 N ASN A 36 O GLN A 122 SHEET 4 AA1 6 GLN A 44 ARG A 52 -1 O PHE A 47 N PHE A 37 SHEET 5 AA1 6 ARG A 57 LEU A 64 -1 O ARG A 57 N ARG A 52 SHEET 6 AA1 6 HIS A 67 TRP A 68 -1 O HIS A 67 N LEU A 64 SHEET 1 AA2 6 LEU A 4 LEU A 9 0 SHEET 2 AA2 6 ILE A 118 ASN A 125 -1 O ILE A 123 N ARG A 5 SHEET 3 AA2 6 PHE A 33 SER A 39 -1 N ASN A 36 O GLN A 122 SHEET 4 AA2 6 GLN A 44 ARG A 52 -1 O PHE A 47 N PHE A 37 SHEET 5 AA2 6 ARG A 57 LEU A 64 -1 O ARG A 57 N ARG A 52 SHEET 6 AA2 6 GLU A 72 VAL A 73 -1 O GLU A 72 N CYS A 60 SHEET 1 AA3 5 ASN A 103 LYS A 109 0 SHEET 2 AA3 5 TYR A 95 ILE A 100 -1 N ILE A 98 O ILE A 105 SHEET 3 AA3 5 PHE A 85 SER A 91 -1 N TYR A 90 O HIS A 97 SHEET 4 AA3 5 TRP A 18 LYS A 25 -1 N VAL A 22 O VAL A 87 SHEET 5 AA3 5 GLU A 128 LYS A 136 -1 O GLU A 128 N LYS A 25 LINK O4 GLC B 1 C1 GAL B 2 1555 1555 1.38 CISPEP 1 CYS A 15 PRO A 16 0 -7.84 CISPEP 2 HIS A 40 PRO A 41 0 -1.85 CRYST1 80.777 80.777 39.149 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025543 0.00000