data_5NO0 # _entry.id 5NO0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NO0 WWPDB D_1200004427 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NO0 _pdbx_database_status.recvd_initial_deposition_date 2017-04-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bloch, J.S.' 1 ? 'Locher, K.P.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'PLoS ONE' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1932-6203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first e0184932 _citation.page_last e0184932 _citation.title 'Structure of the human transcobalamin beta domain in four distinct states.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.pone.0184932 _citation.pdbx_database_id_PubMed 28910388 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bloch, J.S.' 1 ? primary 'Ruetz, M.' 2 ? primary 'Krautler, B.' 3 ? primary 'Locher, K.P.' 4 ? # _cell.entry_id 5NO0 _cell.length_a 59.979 _cell.length_b 59.979 _cell.length_c 70.044 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NO0 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transcobalamin-2 11969.556 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TC-2,Transcobalamin II,TCII' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GVDHMQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLKKAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLR DPNTPLLQGIADYRPKDGETIELRLVSW ; _entity_poly.pdbx_seq_one_letter_code_can ;GVDHMQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLKKAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLR DPNTPLLQGIADYRPKDGETIELRLVSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 ASP n 1 4 HIS n 1 5 MET n 1 6 GLN n 1 7 THR n 1 8 GLN n 1 9 GLU n 1 10 ILE n 1 11 ILE n 1 12 SER n 1 13 VAL n 1 14 THR n 1 15 LEU n 1 16 GLN n 1 17 VAL n 1 18 LEU n 1 19 SER n 1 20 LEU n 1 21 LEU n 1 22 PRO n 1 23 PRO n 1 24 TYR n 1 25 ARG n 1 26 GLN n 1 27 SER n 1 28 ILE n 1 29 SER n 1 30 VAL n 1 31 LEU n 1 32 ALA n 1 33 GLY n 1 34 SER n 1 35 THR n 1 36 VAL n 1 37 GLU n 1 38 ASP n 1 39 VAL n 1 40 LEU n 1 41 LYS n 1 42 LYS n 1 43 ALA n 1 44 HIS n 1 45 GLU n 1 46 LEU n 1 47 GLY n 1 48 GLY n 1 49 PHE n 1 50 THR n 1 51 TYR n 1 52 GLU n 1 53 THR n 1 54 GLN n 1 55 ALA n 1 56 SER n 1 57 LEU n 1 58 SER n 1 59 GLY n 1 60 PRO n 1 61 TYR n 1 62 LEU n 1 63 THR n 1 64 SER n 1 65 VAL n 1 66 MET n 1 67 GLY n 1 68 LYS n 1 69 ALA n 1 70 ALA n 1 71 GLY n 1 72 GLU n 1 73 ARG n 1 74 GLU n 1 75 PHE n 1 76 TRP n 1 77 GLN n 1 78 LEU n 1 79 LEU n 1 80 ARG n 1 81 ASP n 1 82 PRO n 1 83 ASN n 1 84 THR n 1 85 PRO n 1 86 LEU n 1 87 LEU n 1 88 GLN n 1 89 GLY n 1 90 ILE n 1 91 ALA n 1 92 ASP n 1 93 TYR n 1 94 ARG n 1 95 PRO n 1 96 LYS n 1 97 ASP n 1 98 GLY n 1 99 GLU n 1 100 THR n 1 101 ILE n 1 102 GLU n 1 103 LEU n 1 104 ARG n 1 105 LEU n 1 106 VAL n 1 107 SER n 1 108 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 108 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TCN2, TC2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TCO2_HUMAN _struct_ref.pdbx_db_accession P20062 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLKKAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTP LLQGIADYRPKDGETIELRLVSW ; _struct_ref.pdbx_align_begin 325 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NO0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20062 _struct_ref_seq.db_align_beg 325 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 427 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 307 _struct_ref_seq.pdbx_auth_seq_align_end 409 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5NO0 GLY A 1 ? UNP P20062 ? ? 'expression tag' 302 1 1 5NO0 VAL A 2 ? UNP P20062 ? ? 'expression tag' 303 2 1 5NO0 ASP A 3 ? UNP P20062 ? ? 'expression tag' 304 3 1 5NO0 HIS A 4 ? UNP P20062 ? ? 'expression tag' 305 4 1 5NO0 MET A 5 ? UNP P20062 ? ? 'expression tag' 306 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NO0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium chloride, 20% w/v polyethylene glycol 3,350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-26 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NO0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.57 _reflns.d_resolution_low 41.72 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20772 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.76 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5NO0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 39193 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.20 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.723 _refine.ls_d_res_high 1.570 _refine.ls_percent_reflns_obs 99.60 _refine.ls_R_factor_obs 0.1574 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1552 _refine.ls_R_factor_R_free 0.1990 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 1964 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 21.02 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 821 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 970 _refine_hist.d_res_high 1.570 _refine_hist.d_res_low 41.723 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 896 'X-RAY DIFFRACTION' ? f_angle_d 0.836 ? ? 1227 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.673 ? ? 339 'X-RAY DIFFRACTION' ? f_chiral_restr 0.053 ? ? 141 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 159 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.5704 1.6096 2580 0.2978 97.00 0.3188 . . 135 . . 'X-RAY DIFFRACTION' . 1.6096 1.6531 2662 0.2850 99.00 0.3485 . . 145 . . 'X-RAY DIFFRACTION' . 1.6531 1.7018 2648 0.2636 100.00 0.3071 . . 138 . . 'X-RAY DIFFRACTION' . 1.7018 1.7567 2667 0.2399 100.00 0.2741 . . 139 . . 'X-RAY DIFFRACTION' . 1.7567 1.8195 2695 0.2325 100.00 0.2553 . . 144 . . 'X-RAY DIFFRACTION' . 1.8195 1.8924 2666 0.1840 100.00 0.2742 . . 136 . . 'X-RAY DIFFRACTION' . 1.8924 1.9785 2639 0.1446 100.00 0.1973 . . 135 . . 'X-RAY DIFFRACTION' . 1.9785 2.0828 2675 0.1319 100.00 0.1734 . . 139 . . 'X-RAY DIFFRACTION' . 2.0828 2.2133 2677 0.1315 100.00 0.2053 . . 142 . . 'X-RAY DIFFRACTION' . 2.2133 2.3842 2664 0.1339 100.00 0.2089 . . 140 . . 'X-RAY DIFFRACTION' . 2.3842 2.6240 2675 0.1436 100.00 0.2267 . . 143 . . 'X-RAY DIFFRACTION' . 2.6240 3.0037 2659 0.1474 100.00 0.1635 . . 146 . . 'X-RAY DIFFRACTION' . 3.0037 3.7839 2677 0.1369 100.00 0.1563 . . 141 . . 'X-RAY DIFFRACTION' . 3.7839 41.7374 2645 0.1572 99.00 0.1991 . . 141 . . # _struct.entry_id 5NO0 _struct.title 'Beta domain of human transcobalamin in apo form' _struct.pdbx_descriptor Transcobalamin-2 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NO0 _struct_keywords.text 'transcobalamin, apo, substrate-free, TC-beta, Transport protein' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 35 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 46 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 336 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 347 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 21 A . ? LEU 322 A PRO 22 A ? PRO 323 A 1 -2.53 2 ASP 81 A . ? ASP 382 A PRO 82 A ? PRO 383 A 1 4.24 3 ASP 81 A . ? ASP 382 A PRO 82 A ? PRO 383 A 1 -2.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 24 ? LEU A 31 ? TYR A 325 LEU A 332 AA1 2 ILE A 10 ? VAL A 17 ? ILE A 311 VAL A 318 AA1 3 THR A 100 ? SER A 107 ? THR A 401 SER A 408 AA1 4 GLU A 74 ? ARG A 80 ? GLU A 375 ARG A 381 AA1 5 THR A 84 ? PRO A 85 ? THR A 385 PRO A 386 AA2 1 TYR A 51 ? GLN A 54 ? TYR A 352 GLN A 355 AA2 2 TYR A 61 ? VAL A 65 ? TYR A 362 VAL A 366 AA2 3 LYS A 68 ? ALA A 69 ? LYS A 369 ALA A 370 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 30 ? O VAL A 331 N ILE A 11 ? N ILE A 312 AA1 2 3 N THR A 14 ? N THR A 315 O ILE A 101 ? O ILE A 402 AA1 3 4 O ARG A 104 ? O ARG A 405 N GLN A 77 ? N GLN A 378 AA1 4 5 N ARG A 80 ? N ARG A 381 O THR A 84 ? O THR A 385 AA2 1 2 N GLU A 52 ? N GLU A 353 O SER A 64 ? O SER A 365 AA2 2 3 N VAL A 65 ? N VAL A 366 O LYS A 68 ? O LYS A 369 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'binding site for residue GOL A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LEU A 31 ? LEU A 332 . ? 6_555 ? 2 AC1 2 HOH C . ? HOH A 684 . ? 1_555 ? # _atom_sites.entry_id 5NO0 _atom_sites.fract_transf_matrix[1][1] 0.016673 _atom_sites.fract_transf_matrix[1][2] 0.009626 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019252 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014277 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 302 ? ? ? A . n A 1 2 VAL 2 303 ? ? ? A . n A 1 3 ASP 3 304 ? ? ? A . n A 1 4 HIS 4 305 305 HIS HIS A . n A 1 5 MET 5 306 306 MET MET A . n A 1 6 GLN 6 307 307 GLN GLN A . n A 1 7 THR 7 308 308 THR THR A . n A 1 8 GLN 8 309 309 GLN GLN A . n A 1 9 GLU 9 310 310 GLU GLU A . n A 1 10 ILE 10 311 311 ILE ILE A . n A 1 11 ILE 11 312 312 ILE ILE A . n A 1 12 SER 12 313 313 SER SER A . n A 1 13 VAL 13 314 314 VAL VAL A . n A 1 14 THR 14 315 315 THR THR A . n A 1 15 LEU 15 316 316 LEU LEU A . n A 1 16 GLN 16 317 317 GLN GLN A . n A 1 17 VAL 17 318 318 VAL VAL A . n A 1 18 LEU 18 319 319 LEU LEU A . n A 1 19 SER 19 320 320 SER SER A . n A 1 20 LEU 20 321 321 LEU LEU A . n A 1 21 LEU 21 322 322 LEU LEU A . n A 1 22 PRO 22 323 323 PRO PRO A . n A 1 23 PRO 23 324 324 PRO PRO A . n A 1 24 TYR 24 325 325 TYR TYR A . n A 1 25 ARG 25 326 326 ARG ARG A . n A 1 26 GLN 26 327 327 GLN GLN A . n A 1 27 SER 27 328 328 SER SER A . n A 1 28 ILE 28 329 329 ILE ILE A . n A 1 29 SER 29 330 330 SER SER A . n A 1 30 VAL 30 331 331 VAL VAL A . n A 1 31 LEU 31 332 332 LEU LEU A . n A 1 32 ALA 32 333 333 ALA ALA A . n A 1 33 GLY 33 334 334 GLY GLY A . n A 1 34 SER 34 335 335 SER SER A . n A 1 35 THR 35 336 336 THR THR A . n A 1 36 VAL 36 337 337 VAL VAL A . n A 1 37 GLU 37 338 338 GLU GLU A . n A 1 38 ASP 38 339 339 ASP ASP A . n A 1 39 VAL 39 340 340 VAL VAL A . n A 1 40 LEU 40 341 341 LEU LEU A . n A 1 41 LYS 41 342 342 LYS LYS A . n A 1 42 LYS 42 343 343 LYS LYS A . n A 1 43 ALA 43 344 344 ALA ALA A . n A 1 44 HIS 44 345 345 HIS HIS A . n A 1 45 GLU 45 346 346 GLU GLU A . n A 1 46 LEU 46 347 347 LEU LEU A . n A 1 47 GLY 47 348 348 GLY GLY A . n A 1 48 GLY 48 349 349 GLY GLY A . n A 1 49 PHE 49 350 350 PHE PHE A . n A 1 50 THR 50 351 351 THR THR A . n A 1 51 TYR 51 352 352 TYR TYR A . n A 1 52 GLU 52 353 353 GLU GLU A . n A 1 53 THR 53 354 354 THR THR A . n A 1 54 GLN 54 355 355 GLN GLN A . n A 1 55 ALA 55 356 356 ALA ALA A . n A 1 56 SER 56 357 357 SER SER A . n A 1 57 LEU 57 358 358 LEU LEU A . n A 1 58 SER 58 359 359 SER SER A . n A 1 59 GLY 59 360 360 GLY GLY A . n A 1 60 PRO 60 361 361 PRO PRO A . n A 1 61 TYR 61 362 362 TYR TYR A . n A 1 62 LEU 62 363 363 LEU LEU A . n A 1 63 THR 63 364 364 THR THR A . n A 1 64 SER 64 365 365 SER SER A . n A 1 65 VAL 65 366 366 VAL VAL A . n A 1 66 MET 66 367 367 MET MET A . n A 1 67 GLY 67 368 368 GLY GLY A . n A 1 68 LYS 68 369 369 LYS LYS A . n A 1 69 ALA 69 370 370 ALA ALA A . n A 1 70 ALA 70 371 371 ALA ALA A . n A 1 71 GLY 71 372 372 GLY GLY A . n A 1 72 GLU 72 373 373 GLU GLU A . n A 1 73 ARG 73 374 374 ARG ARG A . n A 1 74 GLU 74 375 375 GLU GLU A . n A 1 75 PHE 75 376 376 PHE PHE A . n A 1 76 TRP 76 377 377 TRP TRP A . n A 1 77 GLN 77 378 378 GLN GLN A . n A 1 78 LEU 78 379 379 LEU LEU A . n A 1 79 LEU 79 380 380 LEU LEU A . n A 1 80 ARG 80 381 381 ARG ARG A . n A 1 81 ASP 81 382 382 ASP ASP A . n A 1 82 PRO 82 383 383 PRO PRO A . n A 1 83 ASN 83 384 384 ASN ASN A . n A 1 84 THR 84 385 385 THR THR A . n A 1 85 PRO 85 386 386 PRO PRO A . n A 1 86 LEU 86 387 387 LEU LEU A . n A 1 87 LEU 87 388 388 LEU LEU A . n A 1 88 GLN 88 389 389 GLN GLN A . n A 1 89 GLY 89 390 390 GLY GLY A . n A 1 90 ILE 90 391 391 ILE ILE A . n A 1 91 ALA 91 392 392 ALA ALA A . n A 1 92 ASP 92 393 393 ASP ASP A . n A 1 93 TYR 93 394 394 TYR TYR A . n A 1 94 ARG 94 395 395 ARG ARG A . n A 1 95 PRO 95 396 396 PRO PRO A . n A 1 96 LYS 96 397 397 LYS LYS A . n A 1 97 ASP 97 398 398 ASP ASP A . n A 1 98 GLY 98 399 399 GLY GLY A . n A 1 99 GLU 99 400 400 GLU GLU A . n A 1 100 THR 100 401 401 THR THR A . n A 1 101 ILE 101 402 402 ILE ILE A . n A 1 102 GLU 102 403 403 GLU GLU A . n A 1 103 LEU 103 404 404 LEU LEU A . n A 1 104 ARG 104 405 405 ARG ARG A . n A 1 105 LEU 105 406 406 LEU LEU A . n A 1 106 VAL 106 407 407 VAL VAL A . n A 1 107 SER 107 408 408 SER SER A . n A 1 108 TRP 108 409 409 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 501 1 GOL GOL A . C 3 HOH 1 601 30 HOH HOH A . C 3 HOH 2 602 129 HOH HOH A . C 3 HOH 3 603 93 HOH HOH A . C 3 HOH 4 604 121 HOH HOH A . C 3 HOH 5 605 137 HOH HOH A . C 3 HOH 6 606 13 HOH HOH A . C 3 HOH 7 607 11 HOH HOH A . C 3 HOH 8 608 89 HOH HOH A . C 3 HOH 9 609 55 HOH HOH A . C 3 HOH 10 610 46 HOH HOH A . C 3 HOH 11 611 67 HOH HOH A . C 3 HOH 12 612 78 HOH HOH A . C 3 HOH 13 613 133 HOH HOH A . C 3 HOH 14 614 19 HOH HOH A . C 3 HOH 15 615 73 HOH HOH A . C 3 HOH 16 616 76 HOH HOH A . C 3 HOH 17 617 65 HOH HOH A . C 3 HOH 18 618 71 HOH HOH A . C 3 HOH 19 619 10 HOH HOH A . C 3 HOH 20 620 98 HOH HOH A . C 3 HOH 21 621 25 HOH HOH A . C 3 HOH 22 622 3 HOH HOH A . C 3 HOH 23 623 4 HOH HOH A . C 3 HOH 24 624 58 HOH HOH A . C 3 HOH 25 625 29 HOH HOH A . C 3 HOH 26 626 82 HOH HOH A . C 3 HOH 27 627 37 HOH HOH A . C 3 HOH 28 628 66 HOH HOH A . C 3 HOH 29 629 101 HOH HOH A . C 3 HOH 30 630 16 HOH HOH A . C 3 HOH 31 631 115 HOH HOH A . C 3 HOH 32 632 44 HOH HOH A . C 3 HOH 33 633 99 HOH HOH A . C 3 HOH 34 634 15 HOH HOH A . C 3 HOH 35 635 56 HOH HOH A . C 3 HOH 36 636 32 HOH HOH A . C 3 HOH 37 637 70 HOH HOH A . C 3 HOH 38 638 116 HOH HOH A . C 3 HOH 39 639 24 HOH HOH A . C 3 HOH 40 640 94 HOH HOH A . C 3 HOH 41 641 40 HOH HOH A . C 3 HOH 42 642 83 HOH HOH A . C 3 HOH 43 643 117 HOH HOH A . C 3 HOH 44 644 33 HOH HOH A . C 3 HOH 45 645 49 HOH HOH A . C 3 HOH 46 646 28 HOH HOH A . C 3 HOH 47 647 77 HOH HOH A . C 3 HOH 48 648 9 HOH HOH A . C 3 HOH 49 649 2 HOH HOH A . C 3 HOH 50 650 31 HOH HOH A . C 3 HOH 51 651 85 HOH HOH A . C 3 HOH 52 652 34 HOH HOH A . C 3 HOH 53 653 105 HOH HOH A . C 3 HOH 54 654 22 HOH HOH A . C 3 HOH 55 655 97 HOH HOH A . C 3 HOH 56 656 128 HOH HOH A . C 3 HOH 57 657 7 HOH HOH A . C 3 HOH 58 658 39 HOH HOH A . C 3 HOH 59 659 95 HOH HOH A . C 3 HOH 60 660 5 HOH HOH A . C 3 HOH 61 661 17 HOH HOH A . C 3 HOH 62 662 54 HOH HOH A . C 3 HOH 63 663 80 HOH HOH A . C 3 HOH 64 664 38 HOH HOH A . C 3 HOH 65 665 60 HOH HOH A . C 3 HOH 66 666 23 HOH HOH A . C 3 HOH 67 667 41 HOH HOH A . C 3 HOH 68 668 8 HOH HOH A . C 3 HOH 69 669 12 HOH HOH A . C 3 HOH 70 670 120 HOH HOH A . C 3 HOH 71 671 20 HOH HOH A . C 3 HOH 72 672 51 HOH HOH A . C 3 HOH 73 673 79 HOH HOH A . C 3 HOH 74 674 36 HOH HOH A . C 3 HOH 75 675 88 HOH HOH A . C 3 HOH 76 676 114 HOH HOH A . C 3 HOH 77 677 52 HOH HOH A . C 3 HOH 78 678 140 HOH HOH A . C 3 HOH 79 679 21 HOH HOH A . C 3 HOH 80 680 130 HOH HOH A . C 3 HOH 81 681 63 HOH HOH A . C 3 HOH 82 682 18 HOH HOH A . C 3 HOH 83 683 1 HOH HOH A . C 3 HOH 84 684 141 HOH HOH A . C 3 HOH 85 685 26 HOH HOH A . C 3 HOH 86 686 6 HOH HOH A . C 3 HOH 87 687 127 HOH HOH A . C 3 HOH 88 688 14 HOH HOH A . C 3 HOH 89 689 108 HOH HOH A . C 3 HOH 90 690 100 HOH HOH A . C 3 HOH 91 691 35 HOH HOH A . C 3 HOH 92 692 45 HOH HOH A . C 3 HOH 93 693 91 HOH HOH A . C 3 HOH 94 694 42 HOH HOH A . C 3 HOH 95 695 131 HOH HOH A . C 3 HOH 96 696 81 HOH HOH A . C 3 HOH 97 697 123 HOH HOH A . C 3 HOH 98 698 135 HOH HOH A . C 3 HOH 99 699 59 HOH HOH A . C 3 HOH 100 700 27 HOH HOH A . C 3 HOH 101 701 113 HOH HOH A . C 3 HOH 102 702 136 HOH HOH A . C 3 HOH 103 703 126 HOH HOH A . C 3 HOH 104 704 112 HOH HOH A . C 3 HOH 105 705 138 HOH HOH A . C 3 HOH 106 706 103 HOH HOH A . C 3 HOH 107 707 102 HOH HOH A . C 3 HOH 108 708 106 HOH HOH A . C 3 HOH 109 709 74 HOH HOH A . C 3 HOH 110 710 57 HOH HOH A . C 3 HOH 111 711 104 HOH HOH A . C 3 HOH 112 712 72 HOH HOH A . C 3 HOH 113 713 111 HOH HOH A . C 3 HOH 114 714 107 HOH HOH A . C 3 HOH 115 715 118 HOH HOH A . C 3 HOH 116 716 68 HOH HOH A . C 3 HOH 117 717 62 HOH HOH A . C 3 HOH 118 718 43 HOH HOH A . C 3 HOH 119 719 69 HOH HOH A . C 3 HOH 120 720 64 HOH HOH A . C 3 HOH 121 721 92 HOH HOH A . C 3 HOH 122 722 125 HOH HOH A . C 3 HOH 123 723 134 HOH HOH A . C 3 HOH 124 724 53 HOH HOH A . C 3 HOH 125 725 132 HOH HOH A . C 3 HOH 126 726 47 HOH HOH A . C 3 HOH 127 727 122 HOH HOH A . C 3 HOH 128 728 48 HOH HOH A . C 3 HOH 129 729 142 HOH HOH A . C 3 HOH 130 730 50 HOH HOH A . C 3 HOH 131 731 90 HOH HOH A . C 3 HOH 132 732 86 HOH HOH A . C 3 HOH 133 733 84 HOH HOH A . C 3 HOH 134 734 109 HOH HOH A . C 3 HOH 135 735 87 HOH HOH A . C 3 HOH 136 736 110 HOH HOH A . C 3 HOH 137 737 75 HOH HOH A . C 3 HOH 138 738 96 HOH HOH A . C 3 HOH 139 739 61 HOH HOH A . C 3 HOH 140 740 124 HOH HOH A . C 3 HOH 141 741 143 HOH HOH A . C 3 HOH 142 742 139 HOH HOH A . C 3 HOH 143 743 119 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 120 ? 1 MORE -0 ? 1 'SSA (A^2)' 6800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 610 ? C HOH . 2 1 A HOH 636 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-27 2 'Structure model' 1 1 2019-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category reflns_shell # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 643 ? ? O A HOH 675 ? ? 1.83 2 1 O A HOH 711 ? ? O A HOH 714 ? ? 1.96 3 1 OD2 A ASP 393 ? ? O A HOH 601 ? ? 2.01 4 1 O A HOH 708 ? ? O A HOH 711 ? ? 2.04 5 1 OE1 A GLN 327 ? ? O A HOH 602 ? ? 2.05 6 1 O A HOH 691 ? ? O A HOH 706 ? ? 2.10 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O1 A GOL 501 ? ? 1_555 C3 A GOL 501 ? ? 6_555 0.49 2 1 C1 A GOL 501 ? ? 1_555 O2 A GOL 501 ? ? 6_555 0.69 3 1 C1 A GOL 501 ? ? 1_555 C2 A GOL 501 ? ? 6_555 0.81 4 1 C2 A GOL 501 ? ? 1_555 C2 A GOL 501 ? ? 6_555 1.21 5 1 O1 A GOL 501 ? ? 1_555 C2 A GOL 501 ? ? 6_555 1.25 6 1 O1 A GOL 501 ? ? 1_555 O3 A GOL 501 ? ? 6_555 1.44 7 1 C1 A GOL 501 ? ? 1_555 C3 A GOL 501 ? ? 6_555 1.83 8 1 C1 A GOL 501 ? ? 1_555 C1 A GOL 501 ? ? 6_555 1.87 9 1 C2 A GOL 501 ? ? 1_555 O2 A GOL 501 ? ? 6_555 1.93 10 1 O1 A GOL 501 ? ? 1_555 O2 A GOL 501 ? ? 6_555 1.96 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 384 ? A -153.78 63.61 2 1 LEU A 388 ? ? -86.32 38.97 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 742 ? 6.57 . 2 1 O ? A HOH 743 ? 6.62 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 346 ? CD ? A GLU 45 CD 2 1 Y 1 A GLU 346 ? OE1 ? A GLU 45 OE1 3 1 Y 1 A GLU 346 ? OE2 ? A GLU 45 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 302 ? A GLY 1 2 1 Y 1 A VAL 303 ? A VAL 2 3 1 Y 1 A ASP 304 ? A ASP 3 # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number 310030B_166672 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #