HEADER HYDROLASE 11-APR-17 5NOA TITLE POLYSACCHARIDE LYASE BACCELL_00875 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY 88 GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNSATURATED RHAMNOGALACTURONYL HYDROLASE YTER; COMPND 5 EC: 3.2.1.172; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: YTER_9, BJP75_03260, BTHETA7330_04609; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN GUT MICROBIOTA, POLYSACCHARIDE LYASE, BACTEROIDES KEYWDS 2 THETAIOTAOMICRON, GUM ARABIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CARTMELL,J.MUNOZ-MUNOZ,N.TERRAPON,A.BASLE,B.HENRISSAT,H.J.GILBERT REVDAT 4 17-JAN-24 5NOA 1 ATOM REVDAT 3 23-AUG-17 5NOA 1 JRNL REVDAT 2 05-JUL-17 5NOA 1 JRNL REVDAT 1 28-JUN-17 5NOA 0 JRNL AUTH J.MUNOZ-MUNOZ,A.CARTMELL,N.TERRAPON,A.BASLE,B.HENRISSAT, JRNL AUTH 2 H.J.GILBERT JRNL TITL AN EVOLUTIONARILY DISTINCT FAMILY OF POLYSACCHARIDE LYASES JRNL TITL 2 REMOVES RHAMNOSE CAPPING OF COMPLEX ARABINOGALACTAN JRNL TITL 3 PROTEINS. JRNL REF J. BIOL. CHEM. V. 292 13271 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28637865 JRNL DOI 10.1074/JBC.M117.794578 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MUNOZ-MUNOZ,A.CARTMELL,N.TERRAPON,A.BASLE,B.HENRISSAT REMARK 1 TITL RHAMNOSE CAPPING IN COMPLEX ARABINOGALACTAN PROTEINS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 81513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4229 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3011 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4097 ; 1.517 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6057 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.737 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;11.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.841 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3403 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 674 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1421 ; 1.166 ; 0.997 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1420 ; 1.149 ; 0.995 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1776 ; 1.535 ; 1.505 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1777 ; 1.539 ; 1.507 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 1.864 ; 1.285 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1590 ; 1.863 ; 1.284 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2318 ; 2.238 ; 1.831 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3732 ; 2.454 ;12.760 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3684 ; 2.349 ;12.455 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5617 ; 1.954 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 207 ;18.443 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5612 ; 6.215 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 21.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP, PHASER REMARK 200 STARTING MODEL: 4CE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM MALONATE 20% REMARK 280 POLYETHYLENE GLYCOL (PEG) 3350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.19900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.51830 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.95233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.19900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.51830 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.95233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.19900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.51830 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.95233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.19900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.51830 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.95233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.19900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.51830 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.95233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.19900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.51830 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.95233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.03661 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 143.90467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.03661 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 143.90467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.03661 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 143.90467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.03661 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 143.90467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.03661 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 143.90467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.03661 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 143.90467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 667 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 TYR A 5 REMARK 465 ALA A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 CYS A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 LYS A 25 REMARK 465 LYS A 26 REMARK 465 VAL A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 380 O HOH A 401 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 377 CB SER A 377 OG 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 373 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 373 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 49.63 -87.94 REMARK 500 TRP A 156 79.97 -106.48 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5NOA A 1 381 UNP A0A0P0FFM3_BACT4 DBREF2 5NOA A A0A0P0FFM3 1 381 SEQRES 1 A 381 MET LYS LYS LEU TYR ALA THR LEU PHE SER ALA LEU VAL SEQRES 2 A 381 VAL GLY CYS ALA VAL CYS ALA GLY CYS THR THR LYS LYS SEQRES 3 A 381 VAL SER SER SER ALA GLU VAL VAL ASP ILE ILE HIS LYS SEQRES 4 A 381 VAL ASN GLY TYR TRP GLN THR ASN HIS PRO GLU HIS GLY SEQRES 5 A 381 ARG SER PHE TRP ASP ASN ALA ALA TYR HIS THR GLY ASN SEQRES 6 A 381 MET GLU ALA TYR PHE LEU THR ASN LYS PRO GLU TYR LEU SEQRES 7 A 381 GLU TYR SER LYS GLY TRP ALA GLU HIS ASN GLU TRP LYS SEQRES 8 A 381 GLY ALA LYS SER ASP HIS LYS ALA ASN TRP LYS TYR SER SEQRES 9 A 381 TYR GLY GLU SER ASN ASP TYR VAL LEU PHE GLY ASP TYR SEQRES 10 A 381 GLN ILE CYS PHE GLN THR TYR ALA ASP LEU TYR ASN LEU SEQRES 11 A 381 GLU PRO ASP THR HIS LYS ILE ALA ARG ALA ARG GLU VAL SEQRES 12 A 381 MET GLU TYR GLN MET SER THR PRO ASN ASN ASP TYR TRP SEQRES 13 A 381 TRP TRP ALA ASP GLY LEU TYR MET VAL MET PRO VAL MET SEQRES 14 A 381 THR LYS LEU TYR ASN ILE THR LYS ASN PRO LEU TYR LEU SEQRES 15 A 381 GLU LYS LEU HIS GLU TYR LEU ALA TYR ALA ASP SER ILE SEQRES 16 A 381 MET TYR ASP GLU GLU ALA GLY LEU TYR TYR ARG ASP GLY SEQRES 17 A 381 LYS TYR VAL TYR PRO LYS HIS LYS SER VAL ASN GLY LYS SEQRES 18 A 381 LYS ASP PHE TRP ALA ARG GLY ASP GLY TRP VAL LEU ALA SEQRES 19 A 381 GLY LEU ALA LYS VAL LEU LYS ASP LEU PRO GLU THR ASP SEQRES 20 A 381 LYS TYR ARG GLN GLU TYR ILE ASP ARG PHE ARG THR LEU SEQRES 21 A 381 ALA LYS SER VAL ALA ALA CYS GLN GLN PRO GLU GLY TYR SEQRES 22 A 381 TRP THR ARG SER MET LEU ASP ALA GLN HIS ALA PRO GLY SEQRES 23 A 381 PRO GLU THR SER GLY THR ALA PHE PHE THR TYR GLY LEU SEQRES 24 A 381 GLN TRP GLY VAL ASN ASN GLY PHE LEU ASP SER ALA HIS SEQRES 25 A 381 TYR GLN PRO VAL VAL GLU LYS ALA TRP LYS TYR LEU SER SEQRES 26 A 381 THR VAL ALA LEU GLN PRO ASP GLY LYS ILE GLY TYR VAL SEQRES 27 A 381 GLN PRO ILE GLY GLU LYS ALA ILE PRO GLY GLN VAL VAL SEQRES 28 A 381 ASP ALA ASN SER THR SER ASN PHE GLY VAL GLY ALA PHE SEQRES 29 A 381 LEU LEU ALA ALA CYS GLU ARG VAL ARG TYR LEU GLU SER SEQRES 30 A 381 LEU ILE GLN HIS FORMUL 2 HOH *299(H2 O) HELIX 1 AA1 SER A 28 HIS A 48 1 21 HELIX 2 AA2 PHE A 55 ASN A 73 1 19 HELIX 3 AA3 LYS A 74 ASN A 88 1 15 HELIX 4 AA4 HIS A 97 TRP A 101 5 5 HELIX 5 AA5 PHE A 114 GLN A 118 5 5 HELIX 6 AA6 ILE A 119 GLU A 131 1 13 HELIX 7 AA7 THR A 134 THR A 150 1 17 HELIX 8 AA8 ALA A 159 LYS A 177 1 19 HELIX 9 AA9 PRO A 179 MET A 196 1 18 HELIX 10 AB1 ASP A 207 VAL A 211 5 5 HELIX 11 AB2 TRP A 225 LEU A 243 1 19 HELIX 12 AB3 TYR A 249 CYS A 267 1 19 HELIX 13 AB4 GLU A 288 ASN A 305 1 18 HELIX 14 AB5 ASP A 309 VAL A 327 1 19 HELIX 15 AB6 SER A 357 LEU A 378 1 22 SHEET 1 AA1 2 TYR A 197 ASP A 198 0 SHEET 2 AA1 2 LEU A 203 TYR A 204 -1 O LEU A 203 N ASP A 198 CISPEP 1 TYR A 212 PRO A 213 0 2.23 CRYST1 88.398 88.398 215.857 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011312 0.006531 0.000000 0.00000 SCALE2 0.000000 0.013062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004633 0.00000