HEADER DNA BINDING PROTEIN 11-APR-17 5NOC TITLE SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF PARB (SPO0J) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAGE 0 SPORULATION PROTEIN J; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: SPO0J, BSU40960; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOMODIMER, DNA BINDING PROTEIN, BACTERIAL, CHROMOSOME, SEGREGATION, KEYWDS 2 CENTROMERE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.A.HIGMAN,G.L.M.FISHER,M.S.DILLINGHAM,M.P.CRUMP REVDAT 4 14-JUN-23 5NOC 1 REMARK REVDAT 3 08-MAY-19 5NOC 1 REMARK REVDAT 2 27-DEC-17 5NOC 1 JRNL REVDAT 1 13-DEC-17 5NOC 0 JRNL AUTH G.L.FISHER,C.L.PASTRANA,V.A.HIGMAN,A.KOH,J.A.TAYLOR, JRNL AUTH 2 A.BUTTERER,T.CRAGGS,F.SOBOTT,H.MURRAY,M.P.CRUMP, JRNL AUTH 3 F.MORENO-HERRERO,M.S.DILLINGHAM JRNL TITL THE STRUCTURAL BASIS FOR DYNAMIC DNA BINDING AND BRIDGING JRNL TITL 2 INTERACTIONS WHICH CONDENSE THE BACTERIAL CENTROMERE. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 29244022 JRNL DOI 10.7554/ELIFE.28086 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004260. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 208 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 3 MM PARB (SPO0J), 137 MM SODIUM REMARK 210 CHLORIDE, 2.7 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM NA2HPO4, 1.8 MM REMARK 210 KH2PO4, 95% H2O/5% D2O; 3 MM [U- REMARK 210 13C; U-15N] PARB (SPO0J), 137 MM REMARK 210 SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM REMARK 210 NA2HPO4, 1.8 MM KH2PO4, 95% H2O/ REMARK 210 5% D2O; 1.5 MM PARB (SPO0J), 1.5 REMARK 210 MM [U-13C; U-15N] PARB (SPO0J), REMARK 210 137 MM SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM REMARK 210 NA2HPO4, 1.8 MM KH2PO4, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 3D 13C,15N F1- REMARK 210 FILTERED, 13C,15N F3-EDITED 13C- REMARK 210 NOSEY-HSQC; 3D 13C,15N F1- REMARK 210 FILTERED, 13C,15N F3-EDITED 15N- REMARK 210 NOSEY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 214 REMARK 465 PRO A 215 REMARK 465 GLY A 216 REMARK 465 GLN A 217 REMARK 465 ASN A 218 REMARK 465 VAL A 219 REMARK 465 PRO A 220 REMARK 465 ARG A 221 REMARK 465 GLU A 222 REMARK 465 THR A 223 REMARK 465 LYS A 224 REMARK 465 LYS A 225 REMARK 465 LYS A 226 REMARK 465 GLU A 227 REMARK 465 PRO A 228 REMARK 465 GLY B 214 REMARK 465 PRO B 215 REMARK 465 GLY B 216 REMARK 465 GLN B 217 REMARK 465 ASN B 218 REMARK 465 VAL B 219 REMARK 465 PRO B 220 REMARK 465 ARG B 221 REMARK 465 GLU B 222 REMARK 465 THR B 223 REMARK 465 LYS B 224 REMARK 465 LYS B 225 REMARK 465 LYS B 226 REMARK 465 GLU B 227 REMARK 465 PRO B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 256 -8.58 70.77 REMARK 500 1 LYS A 257 67.67 -100.52 REMARK 500 1 LYS B 256 -8.93 70.84 REMARK 500 1 LYS B 257 67.65 -100.08 REMARK 500 2 LYS A 255 73.31 60.48 REMARK 500 2 LYS A 256 -41.74 71.90 REMARK 500 2 LYS B 255 73.16 60.28 REMARK 500 2 LYS B 256 -41.62 71.86 REMARK 500 3 LYS A 255 73.08 60.75 REMARK 500 3 LYS A 256 -35.77 72.72 REMARK 500 3 LYS B 255 73.30 60.30 REMARK 500 3 LYS B 256 -35.80 72.54 REMARK 500 4 LYS A 256 -3.10 69.14 REMARK 500 4 LYS A 257 72.39 -109.96 REMARK 500 4 GLU A 279 72.60 47.45 REMARK 500 4 LYS B 256 -3.49 69.20 REMARK 500 4 LYS B 257 71.94 -109.45 REMARK 500 4 GLU B 279 72.70 47.47 REMARK 500 5 LYS A 257 38.77 -140.67 REMARK 500 5 LYS B 257 38.49 -140.75 REMARK 500 6 LYS A 255 62.21 61.56 REMARK 500 6 LYS A 256 -33.04 73.37 REMARK 500 6 SER A 266 -163.19 -168.18 REMARK 500 6 LYS B 255 62.23 61.36 REMARK 500 6 LYS B 256 -33.15 73.39 REMARK 500 6 SER B 266 -163.02 -168.18 REMARK 500 7 LYS A 255 -87.17 68.60 REMARK 500 7 LYS A 259 143.98 -171.99 REMARK 500 7 GLU A 279 75.53 49.41 REMARK 500 7 LYS B 255 -87.07 68.29 REMARK 500 7 LYS B 259 143.99 -172.08 REMARK 500 7 GLU B 279 75.46 49.48 REMARK 500 8 LYS A 256 -10.63 71.89 REMARK 500 8 LYS A 257 79.62 -102.33 REMARK 500 8 GLU A 279 85.04 44.78 REMARK 500 8 GLU A 281 -64.94 -108.96 REMARK 500 8 LYS B 256 -10.75 71.98 REMARK 500 8 LYS B 257 79.59 -102.38 REMARK 500 8 GLU B 279 85.38 44.62 REMARK 500 8 GLU B 281 -65.32 -109.18 REMARK 500 9 GLN A 254 -151.72 -123.39 REMARK 500 9 LYS A 256 -34.70 70.93 REMARK 500 9 SER A 278 41.33 -89.56 REMARK 500 9 GLN B 254 -151.91 -123.60 REMARK 500 9 LYS B 256 -34.70 70.94 REMARK 500 9 SER B 278 41.79 -89.71 REMARK 500 10 GLN A 254 72.36 -104.83 REMARK 500 10 LYS A 255 -88.99 66.14 REMARK 500 10 GLU A 279 78.19 46.90 REMARK 500 10 GLN B 254 72.47 -104.75 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34122 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF PARB (SPO0J) DBREF 5NOC A 217 282 UNP P26497 SP0J_BACSU 217 282 DBREF 5NOC B 217 282 UNP P26497 SP0J_BACSU 217 282 SEQADV 5NOC GLY A 214 UNP P26497 EXPRESSION TAG SEQADV 5NOC PRO A 215 UNP P26497 EXPRESSION TAG SEQADV 5NOC GLY A 216 UNP P26497 EXPRESSION TAG SEQADV 5NOC GLY B 214 UNP P26497 EXPRESSION TAG SEQADV 5NOC PRO B 215 UNP P26497 EXPRESSION TAG SEQADV 5NOC GLY B 216 UNP P26497 EXPRESSION TAG SEQRES 1 A 69 GLY PRO GLY GLN ASN VAL PRO ARG GLU THR LYS LYS LYS SEQRES 2 A 69 GLU PRO VAL LYS ASP ALA VAL LEU LYS GLU ARG GLU SER SEQRES 3 A 69 TYR LEU GLN ASN TYR PHE GLY THR THR VAL ASN ILE LYS SEQRES 4 A 69 ARG GLN LYS LYS LYS GLY LYS ILE GLU ILE GLU PHE PHE SEQRES 5 A 69 SER ASN GLU ASP LEU ASP ARG ILE LEU GLU LEU LEU SER SEQRES 6 A 69 GLU ARG GLU SER SEQRES 1 B 69 GLY PRO GLY GLN ASN VAL PRO ARG GLU THR LYS LYS LYS SEQRES 2 B 69 GLU PRO VAL LYS ASP ALA VAL LEU LYS GLU ARG GLU SER SEQRES 3 B 69 TYR LEU GLN ASN TYR PHE GLY THR THR VAL ASN ILE LYS SEQRES 4 B 69 ARG GLN LYS LYS LYS GLY LYS ILE GLU ILE GLU PHE PHE SEQRES 5 B 69 SER ASN GLU ASP LEU ASP ARG ILE LEU GLU LEU LEU SER SEQRES 6 B 69 GLU ARG GLU SER HELIX 1 AA1 ASP A 231 GLY A 246 1 16 HELIX 2 AA2 SER A 266 GLU A 279 1 14 HELIX 3 AA3 ASP B 231 GLY B 246 1 16 HELIX 4 AA4 SER B 266 GLU B 279 1 14 SHEET 1 AA1 4 VAL A 249 LYS A 252 0 SHEET 2 AA1 4 GLY A 258 PHE A 264 -1 O GLU A 261 N ASN A 250 SHEET 3 AA1 4 GLY B 258 PHE B 264 -1 O ILE B 260 N ILE A 262 SHEET 4 AA1 4 VAL B 249 LYS B 252 -1 N ASN B 250 O GLU B 261 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1