HEADER TRANSFERASE 12-APR-17 5NOF TITLE ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE FROM THERMOCOCCUS KODAKARAENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 GENE: TRPD, TK0253; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPTOPHAN BIOSYNTHESIS, PHOSPHORIBOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PERVEEN,N.RASHID,A.C.PAPAGEORGIOU REVDAT 3 17-JAN-24 5NOF 1 REMARK REVDAT 2 13-DEC-23 5NOF 1 REMARK LINK REVDAT 1 29-NOV-17 5NOF 0 JRNL AUTH S.PERVEEN,N.RASHID,X.F.TANG,T.IMANAKA,A.C.PAPAGEORGIOU JRNL TITL ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARENSIS SHOWS JRNL TITL 3 MAXIMUM ACTIVITY WITH ZINC AND FORMS A UNIQUE DIMERIC JRNL TITL 4 STRUCTURE. JRNL REF FEBS OPEN BIO V. 7 1217 2017 JRNL REFN ESSN 2211-5463 JRNL PMID 28781961 JRNL DOI 10.1002/2211-5463.12264 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0157 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.562 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4908 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4714 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6646 ; 1.413 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10920 ; 1.017 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 6.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;36.226 ;24.227 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;16.665 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5530 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 936 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2606 ; 7.205 ; 5.223 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2605 ; 7.203 ; 5.220 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3254 ;10.242 ; 7.820 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3255 ;10.242 ; 7.823 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2302 ; 8.854 ; 5.969 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2302 ; 8.847 ; 5.969 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3393 ;12.714 ; 8.570 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5251 ;16.042 ;63.743 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5221 ;16.050 ;63.745 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 325 B 0 325 19432 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NOE REMARK 200 REMARK 200 REMARK: ROD-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE BUFFER (PH 8.5), 20% (W/V) PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.69450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.69600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.69450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.69600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 162.77800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 179.39200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 639 O HOH A 650 1.86 REMARK 500 O HOH A 646 O HOH A 653 1.98 REMARK 500 CL CL B 403 O HOH B 534 2.04 REMARK 500 O HOH A 602 O HOH A 620 2.14 REMARK 500 OE2 GLU B 191 O HOH B 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH B 522 3555 1.97 REMARK 500 O HOH B 533 O HOH B 533 2566 2.06 REMARK 500 O HOH A 634 O HOH A 640 3655 2.14 REMARK 500 O HOH A 652 O HOH A 653 1455 2.14 REMARK 500 O HOH A 653 O HOH B 539 1655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 64.46 -119.11 REMARK 500 ASP A 78 -179.16 -68.00 REMARK 500 SER A 80 -146.42 -159.98 REMARK 500 THR A 108 71.93 -69.38 REMARK 500 HIS A 149 78.56 -119.73 REMARK 500 SER A 214 72.89 45.38 REMARK 500 ASP A 217 48.44 -84.50 REMARK 500 ARG A 223 -159.46 -106.43 REMARK 500 SER A 271 -135.76 -119.12 REMARK 500 ASP B 78 -72.34 73.63 REMARK 500 HIS B 149 73.32 -118.83 REMARK 500 SER B 214 73.42 44.86 REMARK 500 ASP B 217 48.83 -84.80 REMARK 500 ARG B 223 -158.62 -105.47 REMARK 500 SER B 271 -135.86 -119.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 545 DISTANCE = 7.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE2 REMARK 620 2 GLU A 198 OE2 90.1 REMARK 620 3 HOH A 605 O 83.8 116.2 REMARK 620 4 GLU B 295 OE1 168.8 79.0 103.1 REMARK 620 5 ASP B 296 OD2 92.1 119.7 123.9 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 HOH A 621 O 96.7 REMARK 620 3 HOH A 631 O 149.7 113.3 REMARK 620 4 HOH A 634 O 93.5 65.9 95.2 REMARK 620 5 HOH A 639 O 92.0 145.7 61.0 80.6 REMARK 620 6 HOH A 643 O 98.8 150.4 56.6 137.5 58.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 198 OE1 REMARK 620 2 HOH A 605 O 91.7 REMARK 620 3 HOH A 637 O 106.2 118.1 REMARK 620 4 GLU B 295 OE2 105.6 113.8 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 217 OD1 REMARK 620 2 GLU A 218 OE2 85.7 REMARK 620 3 HOH A 601 O 143.1 58.2 REMARK 620 4 HOH A 619 O 93.9 76.8 71.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 217 OD1 REMARK 620 2 GLU B 218 OE2 88.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 509 O REMARK 620 2 HOH B 540 O 127.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 DBREF 5NOF A 1 325 UNP Q9YGB4 TRPD_THEKO 1 325 DBREF 5NOF B 1 325 UNP Q9YGB4 TRPD_THEKO 1 325 SEQRES 1 A 325 MET SER LEU LEU ALA LYS ILE VAL ASP GLY LYS ASN LEU SEQRES 2 A 325 SER PHE GLU GLU ALA TYR GLU LEU PHE ASN GLU LEU LYS SEQRES 3 A 325 GLY SER ASP GLY VAL LEU ILE GLY ALA TYR LEU ALA ALA SEQRES 4 A 325 LEU GLN THR LYS GLY TYR THR GLY GLU GLU LEU ALA GLY SEQRES 5 A 325 LEU ALA ARG ALA MET ARG ASP SER ALA VAL LYS LEU ASP SEQRES 6 A 325 LEU GLY LYS VAL ALA ASP THR ALA GLY THR GLY GLY ASP SEQRES 7 A 325 GLY SER SER THR ILE ASN VAL SER THR ALA SER ALA LEU SEQRES 8 A 325 ILE LEU SER ALA PHE THR ARG VAL ALA LYS HIS GLY ASN SEQRES 9 A 325 VAL SER ILE THR SER LYS SER GLY SER ALA ASN VAL LEU SEQRES 10 A 325 GLU ALA LEU GLY LEU ASN ILE ARG VAL SER PRO GLU ARG SEQRES 11 A 325 ALA ARG GLU MET VAL GLU SER THR ASN PHE THR PHE ILE SEQRES 12 A 325 PHE ALA PRO ALA TYR HIS PRO ALA LEU ARG PRO ILE MET SEQRES 13 A 325 PRO VAL ARG LYS ALA LEU GLY ILE LYS THR VAL PHE ASN SEQRES 14 A 325 VAL ILE GLY PRO LEU ALA ASN PRO ALA ASP PRO ALA TYR SEQRES 15 A 325 GLN VAL VAL GLY VAL ASN SER PRO GLU LEU LEU GLU PRO SEQRES 16 A 325 VAL ALA GLU ALA LEU GLU PHE LEU GLY VAL GLU ARG ALA SEQRES 17 A 325 LEU VAL VAL HIS GLY SER GLY MET ASP GLU VAL SER PRO SEQRES 18 A 325 HIS ARG GLU THR LEU VAL LEU GLU VAL GLY ASN GLY VAL SEQRES 19 A 325 GLU ARG TYR THR LEU SER PRO GLU ASP PHE GLY ILE GLU SEQRES 20 A 325 PRO VAL LYS PRO LEU PRO CYS SER SER PRO GLU GLU SER SEQRES 21 A 325 ALA ALA ARG ILE LYS ALA VAL LEU GLY GLY SER GLY ARG SEQRES 22 A 325 ARG GLU ASP ARG ASP PHE ILE LEU VAL ASN ALA SER ALA SEQRES 23 A 325 ALA LEU TYR ALA SER GLY VAL ALA GLU ASP PHE ARG GLU SEQRES 24 A 325 GLY LEU GLU MET ALA ARG GLU ALA LEU GLY GLN GLY MET SEQRES 25 A 325 LEU GLU LYS LEU GLU GLU ILE ALA CYS LEU SER LYS SER SEQRES 1 B 325 MET SER LEU LEU ALA LYS ILE VAL ASP GLY LYS ASN LEU SEQRES 2 B 325 SER PHE GLU GLU ALA TYR GLU LEU PHE ASN GLU LEU LYS SEQRES 3 B 325 GLY SER ASP GLY VAL LEU ILE GLY ALA TYR LEU ALA ALA SEQRES 4 B 325 LEU GLN THR LYS GLY TYR THR GLY GLU GLU LEU ALA GLY SEQRES 5 B 325 LEU ALA ARG ALA MET ARG ASP SER ALA VAL LYS LEU ASP SEQRES 6 B 325 LEU GLY LYS VAL ALA ASP THR ALA GLY THR GLY GLY ASP SEQRES 7 B 325 GLY SER SER THR ILE ASN VAL SER THR ALA SER ALA LEU SEQRES 8 B 325 ILE LEU SER ALA PHE THR ARG VAL ALA LYS HIS GLY ASN SEQRES 9 B 325 VAL SER ILE THR SER LYS SER GLY SER ALA ASN VAL LEU SEQRES 10 B 325 GLU ALA LEU GLY LEU ASN ILE ARG VAL SER PRO GLU ARG SEQRES 11 B 325 ALA ARG GLU MET VAL GLU SER THR ASN PHE THR PHE ILE SEQRES 12 B 325 PHE ALA PRO ALA TYR HIS PRO ALA LEU ARG PRO ILE MET SEQRES 13 B 325 PRO VAL ARG LYS ALA LEU GLY ILE LYS THR VAL PHE ASN SEQRES 14 B 325 VAL ILE GLY PRO LEU ALA ASN PRO ALA ASP PRO ALA TYR SEQRES 15 B 325 GLN VAL VAL GLY VAL ASN SER PRO GLU LEU LEU GLU PRO SEQRES 16 B 325 VAL ALA GLU ALA LEU GLU PHE LEU GLY VAL GLU ARG ALA SEQRES 17 B 325 LEU VAL VAL HIS GLY SER GLY MET ASP GLU VAL SER PRO SEQRES 18 B 325 HIS ARG GLU THR LEU VAL LEU GLU VAL GLY ASN GLY VAL SEQRES 19 B 325 GLU ARG TYR THR LEU SER PRO GLU ASP PHE GLY ILE GLU SEQRES 20 B 325 PRO VAL LYS PRO LEU PRO CYS SER SER PRO GLU GLU SER SEQRES 21 B 325 ALA ALA ARG ILE LYS ALA VAL LEU GLY GLY SER GLY ARG SEQRES 22 B 325 ARG GLU ASP ARG ASP PHE ILE LEU VAL ASN ALA SER ALA SEQRES 23 B 325 ALA LEU TYR ALA SER GLY VAL ALA GLU ASP PHE ARG GLU SEQRES 24 B 325 GLY LEU GLU MET ALA ARG GLU ALA LEU GLY GLN GLY MET SEQRES 25 B 325 LEU GLU LYS LEU GLU GLU ILE ALA CYS LEU SER LYS SER HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET NA A 505 1 HET ZN B 401 1 HET ZN B 402 1 HET CL B 403 1 HET NA B 404 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 7 NA 2(NA 1+) FORMUL 10 CL CL 1- FORMUL 12 HOH *103(H2 O) HELIX 1 AA1 MET A 1 ASP A 9 1 9 HELIX 2 AA2 SER A 14 GLY A 27 1 14 HELIX 3 AA3 ASP A 29 GLY A 44 1 16 HELIX 4 AA4 THR A 46 SER A 60 1 15 HELIX 5 AA5 ASN A 84 SER A 94 1 11 HELIX 6 AA6 GLY A 112 LEU A 120 1 9 HELIX 7 AA7 SER A 127 ASN A 139 1 13 HELIX 8 AA8 PHE A 144 HIS A 149 1 6 HELIX 9 AA9 PRO A 150 ARG A 153 5 4 HELIX 10 AB1 PRO A 154 GLY A 163 1 10 HELIX 11 AB2 THR A 166 GLY A 172 1 7 HELIX 12 AB3 SER A 189 GLU A 191 5 3 HELIX 13 AB4 LEU A 192 LEU A 203 1 12 HELIX 14 AB5 SER A 240 GLY A 245 5 6 HELIX 15 AB6 SER A 256 GLY A 269 1 14 HELIX 16 AB7 ARG A 273 SER A 291 1 19 HELIX 17 AB8 ASP A 296 LEU A 308 1 13 HELIX 18 AB9 GLY A 309 SER A 325 1 17 HELIX 19 AC1 SER B 2 ASP B 9 1 8 HELIX 20 AC2 SER B 14 GLY B 27 1 14 HELIX 21 AC3 ASP B 29 GLY B 44 1 16 HELIX 22 AC4 THR B 46 ALA B 61 1 16 HELIX 23 AC5 ASN B 84 SER B 94 1 11 HELIX 24 AC6 GLY B 112 LEU B 120 1 9 HELIX 25 AC7 SER B 127 ASN B 139 1 13 HELIX 26 AC8 PHE B 144 HIS B 149 1 6 HELIX 27 AC9 PRO B 150 ARG B 153 5 4 HELIX 28 AD1 PRO B 154 GLY B 163 1 10 HELIX 29 AD2 THR B 166 GLY B 172 1 7 HELIX 30 AD3 SER B 189 GLU B 191 5 3 HELIX 31 AD4 LEU B 192 LEU B 203 1 12 HELIX 32 AD5 SER B 240 GLY B 245 5 6 HELIX 33 AD6 SER B 256 GLY B 269 1 14 HELIX 34 AD7 ARG B 273 SER B 291 1 19 HELIX 35 AD8 ASP B 296 LEU B 308 1 13 HELIX 36 AD9 GLY B 309 SER B 325 1 17 SHEET 1 AA1 5 ALA A 70 GLY A 74 0 SHEET 2 AA1 5 TYR A 182 GLY A 186 1 O GLY A 186 N ALA A 73 SHEET 3 AA1 5 ARG A 207 HIS A 212 1 O LEU A 209 N VAL A 185 SHEET 4 AA1 5 THR A 225 VAL A 230 -1 O LEU A 226 N HIS A 212 SHEET 5 AA1 5 VAL A 234 LEU A 239 -1 O GLU A 235 N GLU A 229 SHEET 1 AA2 2 VAL A 99 HIS A 102 0 SHEET 2 AA2 2 PHE A 140 ILE A 143 1 O ILE A 143 N LYS A 101 SHEET 1 AA3 5 ALA B 70 GLY B 74 0 SHEET 2 AA3 5 TYR B 182 GLY B 186 1 O GLY B 186 N ALA B 73 SHEET 3 AA3 5 ARG B 207 HIS B 212 1 O LEU B 209 N VAL B 185 SHEET 4 AA3 5 THR B 225 VAL B 230 -1 O LEU B 226 N HIS B 212 SHEET 5 AA3 5 VAL B 234 LEU B 239 -1 O GLU B 235 N GLU B 229 SHEET 1 AA4 2 VAL B 99 HIS B 102 0 SHEET 2 AA4 2 PHE B 140 ILE B 143 1 O ILE B 143 N LYS B 101 LINK OE2 GLU A 48 ZN ZN A 501 1555 1555 1.99 LINK OE2 GLU A 118 ZN ZN A 503 1555 1555 2.04 LINK OE2 GLU A 198 ZN ZN A 501 1555 1555 2.00 LINK OE1 GLU A 198 ZN ZN A 504 1555 1555 2.24 LINK OD1 ASP A 217 ZN ZN A 502 1555 1555 2.05 LINK OE2 GLU A 218 ZN ZN A 502 1555 1555 2.35 LINK OD1 ASP A 278 NA NA A 505 1555 1555 2.50 LINK ZN ZN A 501 O HOH A 605 1555 1555 1.99 LINK ZN ZN A 501 OE1 GLU B 295 1555 1555 2.35 LINK ZN ZN A 501 OD2 ASP B 296 1555 1555 2.08 LINK ZN ZN A 502 O HOH A 601 1555 1555 2.23 LINK ZN ZN A 502 O HOH A 619 1555 1555 2.02 LINK ZN ZN A 503 O HOH A 621 1555 3655 2.34 LINK ZN ZN A 503 O HOH A 631 1555 3655 2.56 LINK ZN ZN A 503 O HOH A 634 1555 1555 2.25 LINK ZN ZN A 503 O HOH A 639 1555 1555 2.47 LINK ZN ZN A 503 O HOH A 643 1555 1555 2.40 LINK ZN ZN A 504 O HOH A 605 1555 1555 2.18 LINK ZN ZN A 504 O HOH A 637 1555 1555 2.06 LINK ZN ZN A 504 OE2 GLU B 295 1555 1555 2.02 LINK OD1 ASP B 217 ZN ZN B 401 1555 1555 2.33 LINK OE2 GLU B 218 ZN ZN B 401 1555 1555 1.96 LINK ZN ZN B 402 O HOH B 509 1555 1555 2.15 LINK ZN ZN B 402 O HOH B 540 1555 1555 2.11 SITE 1 AC1 6 GLU A 48 GLU A 198 ZN A 504 HOH A 605 SITE 2 AC1 6 GLU B 295 ASP B 296 SITE 1 AC2 5 ASP A 78 ASP A 217 GLU A 218 HOH A 601 SITE 2 AC2 5 HOH A 619 SITE 1 AC3 6 GLU A 118 HOH A 621 HOH A 631 HOH A 634 SITE 2 AC3 6 HOH A 639 HOH A 643 SITE 1 AC4 5 GLU A 198 ZN A 501 HOH A 605 HOH A 637 SITE 2 AC4 5 GLU B 295 SITE 1 AC5 3 ARG A 153 ARG A 274 ASP A 278 SITE 1 AC6 3 ASP B 78 ASP B 217 GLU B 218 SITE 1 AC7 4 GLU B 235 HOH B 509 HOH B 536 HOH B 540 SITE 1 AC8 4 VAL B 62 ALA B 147 NA B 404 HOH B 534 SITE 1 AC9 1 CL B 403 CRYST1 42.605 81.389 179.392 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005574 0.00000