HEADER LYASE 12-APR-17 5NON TITLE STRUCTURE OF TRUNCATED NORCOCLAURINE SYNTHASE FROM THALICTRUM FLAVUM TITLE 2 WITH PRODUCT MIMIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-NORCOCLAURINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THALICTRUM FLAVUM SUBSP. GLAUCUM; SOURCE 3 ORGANISM_COMMON: YELLOW MEADOW RUE; SOURCE 4 ORGANISM_TAXID: 150095; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PD451 - SR KEYWDS PICTET SPENGLER CONDENSATION, DOPAMINE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SULA,B.R.LICHMAN,T.PESNOT,J.M.WARD,H.C.HAILES,N.H.KEEP REVDAT 2 18-OCT-17 5NON 1 JRNL REVDAT 1 27-SEP-17 5NON 0 JRNL AUTH B.R.LICHMAN,A.SULA,T.PESNOT,H.C.HAILES,J.M.WARD,N.H.KEEP JRNL TITL STRUCTURAL EVIDENCE FOR THE DOPAMINE-FIRST MECHANISM OF JRNL TITL 2 NORCOCLAURINE SYNTHASE. JRNL REF BIOCHEMISTRY V. 56 5274 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28915025 JRNL DOI 10.1021/ACS.BIOCHEM.7B00769 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 447 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3917 ; 0.032 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3718 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5325 ; 2.793 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8646 ; 1.304 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.982 ;25.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;15.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 4.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4661 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 1.490 ; 1.107 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1886 ; 1.479 ; 1.106 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2356 ; 2.295 ; 1.646 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2357 ; 2.296 ; 1.647 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 1.985 ; 1.391 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2031 ; 1.985 ; 1.393 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2965 ; 3.069 ; 1.994 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4327 ; 5.045 ;14.297 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4328 ; 5.045 ;14.301 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 40 193 B 40 193 9506 0.08 0.05 REMARK 3 2 A 40 193 C 40 193 9444 0.08 0.05 REMARK 3 3 B 39 194 C 39 194 9572 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6150 -11.1370 19.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.2514 REMARK 3 T33: 0.0298 T12: -0.0141 REMARK 3 T13: -0.0272 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.2227 L22: 1.6145 REMARK 3 L33: 2.2252 L12: -0.1259 REMARK 3 L13: 1.4417 L23: 0.2033 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.0890 S13: -0.1013 REMARK 3 S21: -0.1193 S22: -0.0459 S23: 0.0347 REMARK 3 S31: -0.0010 S32: -0.0178 S33: -0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4730 6.0700 48.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.3857 T22: 0.3037 REMARK 3 T33: 0.0048 T12: -0.0234 REMARK 3 T13: 0.0095 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.3859 L22: 2.2905 REMARK 3 L33: 3.6834 L12: 0.0282 REMARK 3 L13: 1.2857 L23: -1.0730 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.1585 S13: 0.0523 REMARK 3 S21: 0.3707 S22: 0.0104 S23: -0.0125 REMARK 3 S31: -0.2471 S32: -0.0671 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 39 C 501 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5000 23.2900 15.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.3143 T22: 0.2733 REMARK 3 T33: 0.0438 T12: -0.0288 REMARK 3 T13: -0.0010 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.8382 L22: 1.8943 REMARK 3 L33: 3.2396 L12: -0.1739 REMARK 3 L13: -0.4214 L23: 0.7664 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.0362 S13: 0.1064 REMARK 3 S21: -0.0992 S22: -0.0773 S23: -0.1607 REMARK 3 S31: -0.1622 S32: 0.0400 S33: 0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.1.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 85.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.00900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V POLYETHYLENE GLYCOL 1000, 10% REMARK 280 REMARK 280 W/V POLYETHYLENE GLYCOL 8000 20 MM TRIS, 50 MM NACL, REMARK 280 PH 7.5, PH REMARK 280 8.5, 10 MM LIGAND, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.10900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.45100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.10900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.45100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ILE A 35 REMARK 465 ILE A 36 REMARK 465 ASN A 37 REMARK 465 GLN A 38 REMARK 465 VAL A 39 REMARK 465 LYS A 195 REMARK 465 SER A 196 REMARK 465 SER B 32 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 ILE B 35 REMARK 465 ILE B 36 REMARK 465 ASN B 37 REMARK 465 SER B 196 REMARK 465 SER C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 ILE C 35 REMARK 465 ILE C 36 REMARK 465 ASN C 37 REMARK 465 GLN C 38 REMARK 465 SER C 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 261 O HOH A 334 1.72 REMARK 500 O HOH C 306 O HOH C 314 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 103 CD GLU A 103 OE2 0.075 REMARK 500 GLU A 118 CD GLU A 118 OE1 0.083 REMARK 500 SER A 158 CB SER A 158 OG 0.079 REMARK 500 TYR A 161 CG TYR A 161 CD2 0.078 REMARK 500 GLU A 166 CD GLU A 166 OE1 0.075 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.082 REMARK 500 TYR B 63 CG TYR B 63 CD1 0.086 REMARK 500 ASP B 88 CB ASP B 88 CG 0.129 REMARK 500 GLU B 107 CD GLU B 107 OE1 0.079 REMARK 500 GLU B 118 CD GLU B 118 OE1 0.108 REMARK 500 TYR B 161 CE1 TYR B 161 CZ 0.128 REMARK 500 SER C 40 C SER C 40 O 0.120 REMARK 500 GLU C 51 CD GLU C 51 OE1 0.181 REMARK 500 GLU C 110 CD GLU C 110 OE2 -0.082 REMARK 500 GLU C 118 CG GLU C 118 CD 0.124 REMARK 500 GLU C 118 CD GLU C 118 OE2 0.100 REMARK 500 LYS C 123 CE LYS C 123 NZ 0.170 REMARK 500 SER C 188 CB SER C 188 OG 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP B 88 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU B 121 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP B 151 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 GLU B 166 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 LEU B 190 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 LYS C 109 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 LYS C 123 CD - CE - NZ ANGL. DEV. = 23.1 DEGREES REMARK 500 ASP C 133 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 LEU C 134 CB - CG - CD1 ANGL. DEV. = -25.3 DEGREES REMARK 500 LEU C 134 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 MET C 183 CG - SD - CE ANGL. DEV. = -22.6 DEGREES REMARK 500 LYS C 189 CD - CE - NZ ANGL. DEV. = -22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 49.53 -82.50 REMARK 500 PRO A 101 135.05 -39.98 REMARK 500 ALA C 53 48.37 -86.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 321 DISTANCE = 6.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 93H A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 93H B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 93H C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5N8Q RELATED DB: PDB REMARK 900 APO STRUCTURE FOR THIS CONSTRUCT DBREF 5NON A 34 196 UNP Q67A25 NCS_THLFG 34 196 DBREF 5NON B 34 196 UNP Q67A25 NCS_THLFG 34 196 DBREF 5NON C 34 196 UNP Q67A25 NCS_THLFG 34 196 SEQADV 5NON SER A 32 UNP Q67A25 EXPRESSION TAG SEQADV 5NON MET A 33 UNP Q67A25 EXPRESSION TAG SEQADV 5NON SER B 32 UNP Q67A25 EXPRESSION TAG SEQADV 5NON MET B 33 UNP Q67A25 EXPRESSION TAG SEQADV 5NON SER C 32 UNP Q67A25 EXPRESSION TAG SEQADV 5NON MET C 33 UNP Q67A25 EXPRESSION TAG SEQRES 1 A 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 A 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 A 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 A 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 A 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 A 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 A 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 A 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 A 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 A 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 A 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 A 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 A 165 SER LYS LEU VAL LEU GLU HIS LYS SER SEQRES 1 B 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 B 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 B 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 B 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 B 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 B 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 B 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 B 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 B 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 B 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 B 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 B 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 B 165 SER LYS LEU VAL LEU GLU HIS LYS SER SEQRES 1 C 165 SER MET GLY ILE ILE ASN GLN VAL SER THR VAL THR LYS SEQRES 2 C 165 VAL ILE HIS HIS GLU LEU GLU VAL ALA ALA SER ALA ASP SEQRES 3 C 165 ASP ILE TRP THR VAL TYR SER TRP PRO GLY LEU ALA LYS SEQRES 4 C 165 HIS LEU PRO ASP LEU LEU PRO GLY ALA PHE GLU LYS LEU SEQRES 5 C 165 GLU ILE ILE GLY ASP GLY GLY VAL GLY THR ILE LEU ASP SEQRES 6 C 165 MET THR PHE VAL PRO GLY GLU PHE PRO HIS GLU TYR LYS SEQRES 7 C 165 GLU LYS PHE ILE LEU VAL ASP ASN GLU HIS ARG LEU LYS SEQRES 8 C 165 LYS VAL GLN MET ILE GLU GLY GLY TYR LEU ASP LEU GLY SEQRES 9 C 165 VAL THR TYR TYR MET ASP THR ILE HIS VAL VAL PRO THR SEQRES 10 C 165 GLY LYS ASP SER CYS VAL ILE LYS SER SER THR GLU TYR SEQRES 11 C 165 HIS VAL LYS PRO GLU PHE VAL LYS ILE VAL GLU PRO LEU SEQRES 12 C 165 ILE THR THR GLY PRO LEU ALA ALA MET ALA ASP ALA ILE SEQRES 13 C 165 SER LYS LEU VAL LEU GLU HIS LYS SER HET 93H A 501 42 HET 93H B 501 42 HET 93H C 501 42 HETNAM 93H 4-[2-[2-(4-METHOXYPHENYL)ETHYLAMINO]ETHYL]BENZENE-1,2- HETNAM 2 93H DIOL FORMUL 4 93H 3(C17 H21 N O3) FORMUL 7 HOH *447(H2 O) HELIX 1 AA1 SER A 55 SER A 64 1 10 HELIX 2 AA2 HIS A 71 LEU A 76 1 6 HELIX 3 AA3 TYR A 131 LEU A 134 5 4 HELIX 4 AA4 PHE A 167 GLU A 172 1 6 HELIX 5 AA5 THR A 177 GLU A 193 1 17 HELIX 6 AA6 SER B 55 SER B 64 1 10 HELIX 7 AA7 TRP B 65 ALA B 69 5 5 HELIX 8 AA8 HIS B 71 LEU B 76 1 6 HELIX 9 AA9 TYR B 131 LEU B 134 5 4 HELIX 10 AB1 PHE B 167 GLU B 172 1 6 HELIX 11 AB2 THR B 177 GLU B 193 1 17 HELIX 12 AB3 SER C 55 SER C 64 1 10 HELIX 13 AB4 GLY C 67 LEU C 76 1 10 HELIX 14 AB5 TYR C 131 LEU C 134 5 4 HELIX 15 AB6 PHE C 167 GLU C 172 1 6 HELIX 16 AB7 THR C 177 HIS C 194 1 18 SHEET 1 AA1 7 VAL A 42 VAL A 52 0 SHEET 2 AA1 7 SER A 152 VAL A 163 -1 O SER A 157 N HIS A 48 SHEET 3 AA1 7 VAL A 136 GLY A 149 -1 N THR A 142 O SER A 158 SHEET 4 AA1 7 LEU A 121 GLY A 129 -1 N VAL A 124 O ASP A 141 SHEET 5 AA1 7 GLU A 107 ASP A 116 -1 N ASP A 116 O LEU A 121 SHEET 6 AA1 7 ILE A 94 PHE A 99 -1 N MET A 97 O TYR A 108 SHEET 7 AA1 7 PHE A 80 ILE A 86 -1 N GLU A 84 O ASP A 96 SHEET 1 AA2 7 VAL B 42 VAL B 52 0 SHEET 2 AA2 7 SER B 152 VAL B 163 -1 O VAL B 163 N VAL B 42 SHEET 3 AA2 7 VAL B 136 GLY B 149 -1 N HIS B 144 O LYS B 156 SHEET 4 AA2 7 LEU B 121 GLY B 129 -1 N VAL B 124 O ASP B 141 SHEET 5 AA2 7 GLU B 107 ASP B 116 -1 N ASP B 116 O LEU B 121 SHEET 6 AA2 7 ILE B 94 PHE B 99 -1 N LEU B 95 O GLU B 110 SHEET 7 AA2 7 PHE B 80 ILE B 86 -1 N GLU B 84 O ASP B 96 SHEET 1 AA3 7 VAL C 42 VAL C 52 0 SHEET 2 AA3 7 SER C 152 VAL C 163 -1 O CYS C 153 N VAL C 52 SHEET 3 AA3 7 VAL C 136 GLY C 149 -1 N THR C 142 O SER C 158 SHEET 4 AA3 7 LEU C 121 GLY C 129 -1 N VAL C 124 O ASP C 141 SHEET 5 AA3 7 GLU C 107 ASP C 116 -1 N ASP C 116 O LEU C 121 SHEET 6 AA3 7 ILE C 94 PHE C 99 -1 N MET C 97 O TYR C 108 SHEET 7 AA3 7 PHE C 80 ILE C 86 -1 N GLU C 84 O ASP C 96 CISPEP 1 PHE A 104 PRO A 105 0 -8.55 CISPEP 2 PHE B 104 PRO B 105 0 -4.81 CISPEP 3 PHE C 104 PRO C 105 0 -6.37 SITE 1 AC1 13 LEU A 68 LEU A 72 LEU A 76 PHE A 80 SITE 2 AC1 13 LEU A 95 MET A 97 TYR A 108 GLU A 110 SITE 3 AC1 13 PHE A 112 LYS A 122 ASP A 141 PRO A 179 SITE 4 AC1 13 MET A 183 SITE 1 AC2 14 LEU B 68 ALA B 69 LEU B 72 LEU B 76 SITE 2 AC2 14 ALA B 79 PHE B 80 MET B 97 TYR B 108 SITE 3 AC2 14 GLU B 110 PHE B 112 LYS B 122 ASP B 141 SITE 4 AC2 14 PRO B 179 MET B 183 SITE 1 AC3 12 LEU C 68 LEU C 72 LEU C 76 PHE C 80 SITE 2 AC3 12 LEU C 95 TYR C 108 GLU C 110 PHE C 112 SITE 3 AC3 12 LYS C 122 ASP C 141 PRO C 179 MET C 183 CRYST1 38.310 110.218 136.902 90.00 90.00 90.00 P 2 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007304 0.00000