HEADER TRANSFERASE 13-APR-17 5NP3 TITLE ABL2 SH3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABELSON TYROSINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH3 DOMAIN, UNP RESIDUES 110-166; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2,ABELSON- COMPND 6 RELATED GENE PROTEIN,TYROSINE-PROTEIN KINASE ARG; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL2, ABLL, ARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING, TYROSINE PHOSPHORYLATION, SH3 DOMAIN, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MERO,L.RADNAI,G.GOGL,I.LEVELES,L.BUDAY REVDAT 4 17-JAN-24 5NP3 1 REMARK REVDAT 3 03-APR-19 5NP3 1 JRNL REVDAT 2 30-JAN-19 5NP3 1 JRNL REVDAT 1 16-MAY-18 5NP3 0 JRNL AUTH B.MERO,L.RADNAI,G.GOGL,O.TOKE,I.LEVELES,K.KOPRIVANACZ, JRNL AUTH 2 B.SZEDER,M.DULK,G.KUDLIK,V.VAS,A.CSERKASZKY,S.SIPEKI, JRNL AUTH 3 L.NYITRAY,B.G.VERTESSY,L.BUDAY JRNL TITL STRUCTURAL INSIGHTS INTO THE TYROSINE JRNL TITL 2 PHOSPHORYLATION-MEDIATED INHIBITION OF SH3 DOMAIN-LIGAND JRNL TITL 3 INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 294 4608 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30659095 JRNL DOI 10.1074/JBC.RA118.004732 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7879 - 3.4199 1.00 2516 141 0.1587 0.1810 REMARK 3 2 3.4199 - 2.7147 1.00 2531 138 0.1987 0.2661 REMARK 3 3 2.7147 - 2.3716 1.00 2505 132 0.2611 0.3066 REMARK 3 4 2.3716 - 2.1548 1.00 2508 137 0.2642 0.2655 REMARK 3 5 2.1548 - 2.0003 1.00 2539 142 0.3260 0.3532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1856 REMARK 3 ANGLE : 0.952 2532 REMARK 3 CHIRALITY : 0.029 273 REMARK 3 PLANARITY : 0.004 333 REMARK 3 DIHEDRAL : 13.307 646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2636 57.6870 -10.3516 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.3956 REMARK 3 T33: 0.4430 T12: -0.0116 REMARK 3 T13: 0.0145 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.0459 L22: 0.2387 REMARK 3 L33: 0.1489 L12: 0.0106 REMARK 3 L13: -0.1718 L23: 0.1621 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.1771 S13: 0.3407 REMARK 3 S21: -0.0927 S22: -0.0595 S23: -0.0889 REMARK 3 S31: -0.0401 S32: -0.1519 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3980 51.4549 -7.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.4246 REMARK 3 T33: 0.2701 T12: 0.0340 REMARK 3 T13: 0.0295 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.2022 L22: 0.2320 REMARK 3 L33: 0.0739 L12: -0.0065 REMARK 3 L13: -0.2491 L23: -0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.1818 S12: 0.0313 S13: 0.1687 REMARK 3 S21: 0.1685 S22: 0.1105 S23: -0.1000 REMARK 3 S31: 0.1147 S32: -0.0165 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9101 53.0327 -10.1738 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.4158 REMARK 3 T33: 0.3323 T12: -0.0050 REMARK 3 T13: 0.0596 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: -0.0407 L22: 0.2692 REMARK 3 L33: -0.0648 L12: -0.0308 REMARK 3 L13: -0.0113 L23: 0.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: 0.1580 S13: 0.1812 REMARK 3 S21: 0.1869 S22: -0.0186 S23: 0.0890 REMARK 3 S31: 0.2014 S32: 0.1877 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5217 67.3186 13.0207 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.3519 REMARK 3 T33: 0.4605 T12: 0.0223 REMARK 3 T13: 0.0058 T23: 0.0611 REMARK 3 L TENSOR REMARK 3 L11: -0.0267 L22: -0.1010 REMARK 3 L33: -0.0037 L12: -0.0206 REMARK 3 L13: -0.0155 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.2450 S13: -0.4825 REMARK 3 S21: 0.2415 S22: 0.2688 S23: 0.1751 REMARK 3 S31: 0.2811 S32: 0.1376 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3707 67.1356 -2.7516 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.5266 REMARK 3 T33: 0.4082 T12: 0.0288 REMARK 3 T13: -0.0252 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: -0.0574 L22: -0.0726 REMARK 3 L33: 0.2375 L12: -0.0667 REMARK 3 L13: 0.1245 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: 0.2059 S12: 0.0349 S13: 0.5746 REMARK 3 S21: -0.2870 S22: 0.1123 S23: -0.2722 REMARK 3 S31: -0.0634 S32: 0.0064 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5165 66.4504 5.6399 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.4081 REMARK 3 T33: 0.2963 T12: 0.0091 REMARK 3 T13: 0.0102 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.2275 L22: 0.0546 REMARK 3 L33: -0.1105 L12: -0.1618 REMARK 3 L13: -0.1218 L23: 0.2062 REMARK 3 S TENSOR REMARK 3 S11: 0.2053 S12: 0.0606 S13: 0.2804 REMARK 3 S21: 0.0320 S22: -0.1800 S23: -0.0613 REMARK 3 S31: 0.0155 S32: -0.3913 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1926 71.0801 5.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.3427 REMARK 3 T33: 0.3721 T12: 0.0943 REMARK 3 T13: 0.0269 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.0462 L22: 0.0275 REMARK 3 L33: 0.0051 L12: -0.0023 REMARK 3 L13: -0.0899 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.3865 S12: 0.1070 S13: 0.0960 REMARK 3 S21: -0.1186 S22: -0.3180 S23: -0.4317 REMARK 3 S31: -0.0522 S32: -0.7677 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0977 64.3817 6.4107 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.3446 REMARK 3 T33: 0.3088 T12: 0.0043 REMARK 3 T13: -0.0277 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0489 L22: -0.0835 REMARK 3 L33: 0.1300 L12: 0.0165 REMARK 3 L13: -0.0312 L23: -0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.2311 S12: -0.1467 S13: 0.1828 REMARK 3 S21: -0.0149 S22: -0.0654 S23: -0.3637 REMARK 3 S31: 0.0788 S32: -0.1082 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 64 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0471 62.0033 8.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.5140 REMARK 3 T33: 0.3145 T12: -0.0108 REMARK 3 T13: -0.0630 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.1899 L22: 0.0236 REMARK 3 L33: 0.3031 L12: -0.0470 REMARK 3 L13: 0.0128 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.1447 S13: 0.0332 REMARK 3 S21: -0.4616 S22: 0.0492 S23: 0.3638 REMARK 3 S31: -0.0722 S32: -0.0049 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3616 52.9596 10.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.3733 T22: 0.4761 REMARK 3 T33: 0.6729 T12: 0.0759 REMARK 3 T13: -0.2386 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 0.0065 L22: -0.0103 REMARK 3 L33: 0.0332 L12: 0.0085 REMARK 3 L13: -0.0056 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.4569 S12: -0.2422 S13: 0.2987 REMARK 3 S21: -0.2976 S22: -0.4714 S23: -0.4664 REMARK 3 S31: 0.7305 S32: -0.1167 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 79 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7610 62.4173 11.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.4313 REMARK 3 T33: 0.2648 T12: -0.0090 REMARK 3 T13: -0.0100 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.0377 L22: 0.1019 REMARK 3 L33: 0.0621 L12: -0.0991 REMARK 3 L13: 0.0156 L23: 0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: -0.6138 S13: 0.0944 REMARK 3 S21: -0.1974 S22: 0.0269 S23: 0.1867 REMARK 3 S31: -0.0371 S32: 0.0277 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 94 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0427 63.9497 -0.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.5841 REMARK 3 T33: 0.2280 T12: -0.2038 REMARK 3 T13: -0.0202 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.0132 REMARK 3 L33: 0.0118 L12: 0.0033 REMARK 3 L13: -0.0134 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.3875 S13: -0.2955 REMARK 3 S21: -0.4078 S22: 0.0003 S23: -0.0788 REMARK 3 S31: 0.3258 S32: -0.0131 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 99 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9716 62.7710 13.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.5045 REMARK 3 T33: 0.2131 T12: 0.0111 REMARK 3 T13: -0.0416 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: -0.0015 L22: 0.0263 REMARK 3 L33: 0.0234 L12: 0.0170 REMARK 3 L13: 0.0126 L23: 0.1640 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.4273 S13: 0.1966 REMARK 3 S21: -0.1632 S22: 0.4863 S23: -0.1138 REMARK 3 S31: 0.1211 S32: 0.3297 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 107 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1014 64.0227 7.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.3935 REMARK 3 T33: 0.1981 T12: -0.0034 REMARK 3 T13: -0.0463 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: -0.0196 L22: 0.1520 REMARK 3 L33: -0.0207 L12: 0.0238 REMARK 3 L13: 0.0410 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.1249 S12: 0.0042 S13: -0.2503 REMARK 3 S21: 0.0200 S22: -0.0340 S23: 0.0865 REMARK 3 S31: -0.0320 S32: -0.0239 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 61 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9182 48.5574 -4.7592 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.3737 REMARK 3 T33: 0.3661 T12: -0.0399 REMARK 3 T13: -0.0094 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.0318 REMARK 3 L33: 0.2157 L12: -0.1587 REMARK 3 L13: 0.0511 L23: 0.2545 REMARK 3 S TENSOR REMARK 3 S11: 0.1774 S12: -0.0446 S13: -0.0076 REMARK 3 S21: -0.0781 S22: 0.0813 S23: -0.2393 REMARK 3 S31: 0.1858 S32: 0.0265 S33: 0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 87 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7022 50.3509 -7.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.3361 REMARK 3 T33: 0.3195 T12: -0.0157 REMARK 3 T13: 0.0125 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.1256 L22: 0.2558 REMARK 3 L33: 0.0803 L12: 0.0023 REMARK 3 L13: 0.4025 L23: 0.4187 REMARK 3 S TENSOR REMARK 3 S11: 0.1457 S12: -0.0097 S13: 0.0121 REMARK 3 S21: 0.1108 S22: -0.2000 S23: -0.1622 REMARK 3 S31: -0.0056 S32: -0.1883 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ABO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M DI-SODIUM-DL-MALATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.94000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.97000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.95500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.98500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 144.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 HIS A 62 REMARK 465 MET A 63 REMARK 465 GLY B 60 REMARK 465 SER B 61 REMARK 465 HIS B 62 REMARK 465 GLY C 60 REMARK 465 SER C 61 REMARK 465 HIS C 62 REMARK 465 MET C 63 REMARK 465 GLY D 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 105 CD CE NZ REMARK 470 ARG C 89 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 106 CG OD1 ND2 REMARK 470 LYS D 87 CD CE NZ REMARK 470 LYS D 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 78 O HOH B 201 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 65 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 75 40.52 -105.81 REMARK 500 ASP A 77 -147.14 57.91 REMARK 500 ASN A 78 47.92 -106.36 REMARK 500 ASP B 77 -101.32 -12.06 REMARK 500 SER B 104 -163.24 -127.29 REMARK 500 ASP C 77 -147.13 59.59 REMARK 500 SER C 104 -168.97 -126.80 REMARK 500 SER C 104 -168.97 -126.94 REMARK 500 MET D 63 -175.25 -176.11 REMARK 500 ASN D 64 41.55 -108.47 REMARK 500 ASP D 77 -115.12 61.62 REMARK 500 ASN D 94 -168.75 -77.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NP3 A 64 120 UNP P42684 ABL2_HUMAN 110 166 DBREF 5NP3 B 64 120 UNP P42684 ABL2_HUMAN 110 166 DBREF 5NP3 C 64 120 UNP P42684 ABL2_HUMAN 110 166 DBREF 5NP3 D 64 120 UNP P42684 ABL2_HUMAN 110 166 SEQADV 5NP3 GLY A 60 UNP P42684 EXPRESSION TAG SEQADV 5NP3 SER A 61 UNP P42684 EXPRESSION TAG SEQADV 5NP3 HIS A 62 UNP P42684 EXPRESSION TAG SEQADV 5NP3 MET A 63 UNP P42684 EXPRESSION TAG SEQADV 5NP3 GLY B 60 UNP P42684 EXPRESSION TAG SEQADV 5NP3 SER B 61 UNP P42684 EXPRESSION TAG SEQADV 5NP3 HIS B 62 UNP P42684 EXPRESSION TAG SEQADV 5NP3 MET B 63 UNP P42684 EXPRESSION TAG SEQADV 5NP3 GLY C 60 UNP P42684 EXPRESSION TAG SEQADV 5NP3 SER C 61 UNP P42684 EXPRESSION TAG SEQADV 5NP3 HIS C 62 UNP P42684 EXPRESSION TAG SEQADV 5NP3 MET C 63 UNP P42684 EXPRESSION TAG SEQADV 5NP3 GLY D 60 UNP P42684 EXPRESSION TAG SEQADV 5NP3 SER D 61 UNP P42684 EXPRESSION TAG SEQADV 5NP3 HIS D 62 UNP P42684 EXPRESSION TAG SEQADV 5NP3 MET D 63 UNP P42684 EXPRESSION TAG SEQRES 1 A 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU TYR ASP PHE SEQRES 2 A 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 A 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 A 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 A 61 PRO SER ASN TYR ILE THR PRO VAL ASN SEQRES 1 B 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU TYR ASP PHE SEQRES 2 B 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 B 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 B 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 B 61 PRO SER ASN TYR ILE THR PRO VAL ASN SEQRES 1 C 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU TYR ASP PHE SEQRES 2 C 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 C 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 C 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 C 61 PRO SER ASN TYR ILE THR PRO VAL ASN SEQRES 1 D 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU TYR ASP PHE SEQRES 2 D 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 D 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 D 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 D 61 PRO SER ASN TYR ILE THR PRO VAL ASN FORMUL 5 HOH *37(H2 O) SHEET 1 AA1 5 GLN A 108 PRO A 112 0 SHEET 2 AA1 5 TRP A 99 ARG A 103 -1 N SER A 100 O VAL A 111 SHEET 3 AA1 5 LYS A 87 TYR A 93 -1 N LEU A 91 O GLU A 101 SHEET 4 AA1 5 PHE A 66 ALA A 68 -1 N PHE A 66 O LEU A 88 SHEET 5 AA1 5 ILE A 116 PRO A 118 -1 O THR A 117 N VAL A 67 SHEET 1 AA2 5 GLN B 108 PRO B 112 0 SHEET 2 AA2 5 TRP B 99 ARG B 103 -1 N SER B 100 O VAL B 111 SHEET 3 AA2 5 LYS B 87 TYR B 93 -1 N LEU B 91 O GLU B 101 SHEET 4 AA2 5 LEU B 65 ALA B 68 -1 N PHE B 66 O LEU B 88 SHEET 5 AA2 5 ILE B 116 PRO B 118 -1 O THR B 117 N VAL B 67 SHEET 1 AA3 5 GLY C 107 PRO C 112 0 SHEET 2 AA3 5 TRP C 99 SER C 104 -1 N VAL C 102 O GLY C 109 SHEET 3 AA3 5 LYS C 87 TYR C 93 -1 N LEU C 91 O GLU C 101 SHEET 4 AA3 5 PHE C 66 ALA C 68 -1 N PHE C 66 O LEU C 88 SHEET 5 AA3 5 ILE C 116 PRO C 118 -1 O THR C 117 N VAL C 67 SHEET 1 AA4 5 GLY D 107 PRO D 112 0 SHEET 2 AA4 5 TRP D 99 SER D 104 -1 N SER D 104 O GLY D 107 SHEET 3 AA4 5 LYS D 87 TYR D 93 -1 N LEU D 91 O GLU D 101 SHEET 4 AA4 5 LEU D 65 ALA D 68 -1 N PHE D 66 O LEU D 88 SHEET 5 AA4 5 ILE D 116 PRO D 118 -1 O THR D 117 N VAL D 67 CRYST1 44.780 44.780 173.910 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022331 0.012893 0.000000 0.00000 SCALE2 0.000000 0.025786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005750 0.00000