HEADER TRANSFERASE 13-APR-17 5NP5 TITLE ABL2 SH3 PTYR116/161 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABELSON TYROSINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH3 DOMAIN, UNP RESIDUES 110-166; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2,ABELSON- COMPND 6 RELATED GENE PROTEIN,TYROSINE-PROTEIN KINASE ARG; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL2, ABLL, ARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING, TYROSINE PHOSPHORYLATION, SH3 DOMAIN, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MERO,L.RADNAI,G.GOGL,I.LEVELES,L.BUDAY REVDAT 4 17-JAN-24 5NP5 1 REMARK REVDAT 3 03-APR-19 5NP5 1 JRNL REVDAT 2 30-JAN-19 5NP5 1 JRNL REVDAT 1 16-MAY-18 5NP5 0 JRNL AUTH B.MERO,L.RADNAI,G.GOGL,O.TOKE,I.LEVELES,K.KOPRIVANACZ, JRNL AUTH 2 B.SZEDER,M.DULK,G.KUDLIK,V.VAS,A.CSERKASZKY,S.SIPEKI, JRNL AUTH 3 L.NYITRAY,B.G.VERTESSY,L.BUDAY JRNL TITL STRUCTURAL INSIGHTS INTO THE TYROSINE JRNL TITL 2 PHOSPHORYLATION-MEDIATED INHIBITION OF SH3 DOMAIN-LIGAND JRNL TITL 3 INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 294 4608 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30659095 JRNL DOI 10.1074/JBC.RA118.004732 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1750 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4222 - 2.6777 0.99 2517 146 0.1446 0.1626 REMARK 3 2 2.6777 - 2.1255 1.00 2490 159 0.1747 0.2116 REMARK 3 3 2.1255 - 1.8568 0.99 2503 101 0.1726 0.2126 REMARK 3 4 1.8568 - 1.6871 1.00 2456 167 0.1934 0.2231 REMARK 3 5 1.6871 - 1.5662 0.99 2479 138 0.2153 0.2435 REMARK 3 6 1.5662 - 1.4738 1.00 2502 110 0.2381 0.2646 REMARK 3 7 1.4738 - 1.4000 0.99 2427 141 0.2781 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1016 REMARK 3 ANGLE : 1.610 1400 REMARK 3 CHIRALITY : 0.088 146 REMARK 3 PLANARITY : 0.009 183 REMARK 3 DIHEDRAL : 14.299 359 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6704 12.2227 -12.8803 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.1766 REMARK 3 T33: 0.1143 T12: -0.0314 REMARK 3 T13: 0.0023 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.2579 L22: 5.8153 REMARK 3 L33: 1.6710 L12: -2.6936 REMARK 3 L13: 0.3521 L23: 1.1573 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.2702 S13: 0.1593 REMARK 3 S21: 0.0375 S22: -0.1709 S23: 0.0567 REMARK 3 S31: -0.3561 S32: 0.1894 S33: 0.1943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2450 6.6729 -15.3674 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.1527 REMARK 3 T33: 0.2017 T12: -0.0189 REMARK 3 T13: -0.0151 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 6.9823 L22: 5.2196 REMARK 3 L33: 3.4020 L12: -1.8721 REMARK 3 L13: -1.2490 L23: 1.9134 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.2291 S13: -0.4926 REMARK 3 S21: 0.0532 S22: 0.1794 S23: -0.4370 REMARK 3 S31: 0.1570 S32: 0.0686 S33: -0.0267 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3461 8.9782 -18.5621 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1586 REMARK 3 T33: 0.1246 T12: 0.0005 REMARK 3 T13: -0.0173 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3573 L22: 2.7651 REMARK 3 L33: 4.1400 L12: 1.0779 REMARK 3 L13: 0.9591 L23: 1.9235 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0268 S13: 0.0271 REMARK 3 S21: -0.1705 S22: -0.0543 S23: -0.0559 REMARK 3 S31: -0.0552 S32: -0.0995 S33: 0.1086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0532 11.4205 -18.0888 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.1551 REMARK 3 T33: 0.1326 T12: -0.0135 REMARK 3 T13: -0.0150 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 5.5778 L22: 3.1898 REMARK 3 L33: 2.4540 L12: 2.7194 REMARK 3 L13: 1.0849 L23: 0.7082 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: -0.0372 S13: 0.0588 REMARK 3 S21: -0.3152 S22: -0.0488 S23: -0.2134 REMARK 3 S31: -0.1606 S32: 0.0777 S33: 0.0349 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1989 4.8896 -10.6778 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.2206 REMARK 3 T33: 0.1052 T12: -0.0144 REMARK 3 T13: -0.0011 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.3958 L22: 7.8153 REMARK 3 L33: 2.5409 L12: 0.8870 REMARK 3 L13: -1.2896 L23: 3.0494 REMARK 3 S TENSOR REMARK 3 S11: -0.2390 S12: -0.3173 S13: -0.1953 REMARK 3 S21: 0.4780 S22: -0.0590 S23: 0.0273 REMARK 3 S31: 0.3696 S32: 0.0103 S33: 0.1453 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6306 3.1747 4.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.2946 T22: 0.2483 REMARK 3 T33: 0.1978 T12: -0.0849 REMARK 3 T13: 0.0118 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.2135 L22: 6.6447 REMARK 3 L33: 1.5751 L12: 0.8453 REMARK 3 L13: 2.0296 L23: -0.8971 REMARK 3 S TENSOR REMARK 3 S11: 0.1960 S12: -0.2706 S13: -0.4860 REMARK 3 S21: -0.2096 S22: 0.4075 S23: 0.4301 REMARK 3 S31: -0.1626 S32: 0.1045 S33: -0.1913 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1197 7.9790 4.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.5228 T22: 0.1258 REMARK 3 T33: 0.1898 T12: -0.0733 REMARK 3 T13: -0.0047 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.0512 L22: 1.3563 REMARK 3 L33: 1.4482 L12: -0.1007 REMARK 3 L13: 1.2243 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: -0.0288 S13: 0.1874 REMARK 3 S21: 0.7631 S22: 0.3219 S23: 0.1586 REMARK 3 S31: -1.2926 S32: 0.0517 S33: 0.6699 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3168 5.4422 13.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.3463 T22: 0.1453 REMARK 3 T33: 0.1231 T12: 0.0100 REMARK 3 T13: 0.0459 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 3.5641 L22: 1.7978 REMARK 3 L33: 2.1579 L12: 2.1441 REMARK 3 L13: -1.0695 L23: 0.3322 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.3895 S13: -0.0704 REMARK 3 S21: -0.2228 S22: 0.0837 S23: -0.1761 REMARK 3 S31: -0.9951 S32: 0.2274 S33: 0.0430 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1961 7.4042 8.7128 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.3171 REMARK 3 T33: 0.2361 T12: 0.1450 REMARK 3 T13: 0.1181 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 5.1027 L22: 3.3594 REMARK 3 L33: 0.2002 L12: -2.9112 REMARK 3 L13: 0.3299 L23: -0.7362 REMARK 3 S TENSOR REMARK 3 S11: -0.2928 S12: 0.1789 S13: 0.0606 REMARK 3 S21: 0.6250 S22: 0.3341 S23: 0.3374 REMARK 3 S31: -0.5665 S32: -0.4742 S33: -0.1757 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4571 5.7283 1.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.3062 T22: 0.4900 REMARK 3 T33: 0.1408 T12: -0.1099 REMARK 3 T13: 0.0019 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.2434 L22: 7.7796 REMARK 3 L33: 7.1018 L12: -1.8585 REMARK 3 L13: -1.0800 L23: -4.5871 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: 0.3988 S13: -0.0002 REMARK 3 S21: -0.8537 S22: -0.2594 S23: 0.1887 REMARK 3 S31: 0.3129 S32: 0.8127 S33: 0.4438 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 32.413 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.350 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ABO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2SO4, 0.1 M SODIUM ACETATE, REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.95500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 60 REMARK 465 SER B 61 REMARK 465 HIS B 62 REMARK 465 MET B 63 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 64 CG OD1 ND2 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 120 O HOH B 206 1.49 REMARK 500 O HOH A 307 O HOH A 333 1.84 REMARK 500 O2P PTR B 115 O HOH B 201 1.88 REMARK 500 O HOH A 301 O HOH A 344 1.89 REMARK 500 OE1 GLU B 101 O HOH B 202 1.90 REMARK 500 O HOH A 345 O HOH A 353 2.02 REMARK 500 ND2 ASN B 78 O HOH B 203 2.05 REMARK 500 N ASN B 64 O HOH B 204 2.09 REMARK 500 O GLY B 92 O HOH B 205 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS A 105 O HOH B 201 2655 1.46 REMARK 500 O HOH A 310 O HOH B 215 2555 1.87 REMARK 500 NZ LYS A 105 O HOH B 201 2655 2.05 REMARK 500 O HOH B 220 O HOH B 229 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -37.35 -132.54 REMARK 500 SER A 75 18.55 -142.00 REMARK 500 ASN B 78 -15.18 74.84 REMARK 500 ASN B 94 -165.24 -77.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 DBREF 5NP5 A 64 120 UNP P42684 ABL2_HUMAN 110 166 DBREF 5NP5 B 64 120 UNP P42684 ABL2_HUMAN 110 166 SEQADV 5NP5 GLY A 60 UNP P42684 EXPRESSION TAG SEQADV 5NP5 SER A 61 UNP P42684 EXPRESSION TAG SEQADV 5NP5 HIS A 62 UNP P42684 EXPRESSION TAG SEQADV 5NP5 MET A 63 UNP P42684 EXPRESSION TAG SEQADV 5NP5 GLY B 60 UNP P42684 EXPRESSION TAG SEQADV 5NP5 SER B 61 UNP P42684 EXPRESSION TAG SEQADV 5NP5 HIS B 62 UNP P42684 EXPRESSION TAG SEQADV 5NP5 MET B 63 UNP P42684 EXPRESSION TAG SEQRES 1 A 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU PTR ASP PHE SEQRES 2 A 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 A 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 A 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 A 61 PRO SER ASN PTR ILE THR PRO VAL ASN SEQRES 1 B 61 GLY SER HIS MET ASN LEU PHE VAL ALA LEU PTR ASP PHE SEQRES 2 B 61 VAL ALA SER GLY ASP ASN THR LEU SER ILE THR LYS GLY SEQRES 3 B 61 GLU LYS LEU ARG VAL LEU GLY TYR ASN GLN ASN GLY GLU SEQRES 4 B 61 TRP SER GLU VAL ARG SER LYS ASN GLY GLN GLY TRP VAL SEQRES 5 B 61 PRO SER ASN PTR ILE THR PRO VAL ASN MODRES 5NP5 PTR A 70 TYR MODIFIED RESIDUE MODRES 5NP5 PTR A 115 TYR MODIFIED RESIDUE MODRES 5NP5 PTR B 70 TYR MODIFIED RESIDUE MODRES 5NP5 PTR B 115 TYR MODIFIED RESIDUE HET PTR A 70 23 HET PTR A 115 23 HET PTR B 70 23 HET PTR B 115 23 HET SO4 A 201 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 4(C9 H12 N O6 P) FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *94(H2 O) SHEET 1 AA1 5 GLY A 107 PRO A 112 0 SHEET 2 AA1 5 TRP A 99 SER A 104 -1 N VAL A 102 O GLY A 109 SHEET 3 AA1 5 LYS A 87 TYR A 93 -1 N LEU A 91 O GLU A 101 SHEET 4 AA1 5 LEU A 65 ALA A 68 -1 N PHE A 66 O LEU A 88 SHEET 5 AA1 5 ILE A 116 PRO A 118 -1 O THR A 117 N VAL A 67 SHEET 1 AA2 5 GLN B 108 PRO B 112 0 SHEET 2 AA2 5 TRP B 99 ARG B 103 -1 N SER B 100 O VAL B 111 SHEET 3 AA2 5 LYS B 87 TYR B 93 -1 N LEU B 91 O GLU B 101 SHEET 4 AA2 5 PHE B 66 ALA B 68 -1 N PHE B 66 O LEU B 88 SHEET 5 AA2 5 ILE B 116 PRO B 118 -1 O THR B 117 N VAL B 67 LINK C LEU A 69 N PTR A 70 1555 1555 1.32 LINK C PTR A 70 N ASP A 71 1555 1555 1.32 LINK C ASN A 114 N PTR A 115 1555 1555 1.33 LINK C PTR A 115 N ILE A 116 1555 1555 1.33 LINK C LEU B 69 N PTR B 70 1555 1555 1.31 LINK C PTR B 70 N ASP B 71 1555 1555 1.32 LINK C ASN B 114 N PTR B 115 1555 1555 1.33 LINK C PTR B 115 N ILE B 116 1555 1555 1.32 SITE 1 AC1 5 ARG A 103 GLY A 107 HOH A 330 HOH A 335 SITE 2 AC1 5 HOH A 340 CRYST1 22.510 45.910 45.770 90.00 89.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.044425 0.000000 -0.000205 0.00000 SCALE2 0.000000 0.021782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021849 0.00000