HEADER TRANSFERASE 13-APR-17 5NP8 TITLE PGK1 IN COMPLEX WITH CRT0063465 (3-[2-(4-BROMOPHENYL)-5,7-DIMETHYL- TITLE 2 PYRAZOLO[1,5-A]PYRIMIDIN-6-YL]PROPANOIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL MIGRATION-INDUCING GENE 10 PROTEIN,PRIMER RECOGNITION COMPND 5 PROTEIN 2,PRP 2; COMPND 6 EC: 2.7.2.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PGK1, PGKA, MIG10, OK/SW-CL.110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.TURNBULL,A.E.BILSLAND,Y.LIU,D.SUMPTON,K.STEVENSON,C.J.CAIRNEY, AUTHOR 2 J.ROFFEY,D.JENKINSON,W.N.KEITH REVDAT 4 17-JAN-24 5NP8 1 JRNL REVDAT 3 21-AUG-19 5NP8 1 JRNL REVDAT 2 14-AUG-19 5NP8 1 JRNL REVDAT 1 16-MAY-18 5NP8 0 JRNL AUTH A.E.BILSLAND,Y.LIU,A.TURNBULL,D.SUMPTON,K.STEVENSON, JRNL AUTH 2 C.J.CAIRNEY,S.M.BOYD,J.ROFFEY,D.JENKINSON,W.N.KEITH JRNL TITL A NOVEL PYRAZOLOPYRIMIDINE LIGAND OF HUMAN PGK1 AND STRESS JRNL TITL 2 SENSOR DJ1 MODULATES THE SHELTERIN COMPLEX AND TELOMERE JRNL TITL 3 LENGTH REGULATION. JRNL REF NEOPLASIA V. 21 893 2019 JRNL REFN ESSN 1476-5586 JRNL PMID 31401411 JRNL DOI 10.1016/J.NEO.2019.07.008 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 26787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1928 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3071 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2975 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4153 ; 1.972 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6830 ; 0.916 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;41.525 ;25.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;13.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3477 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 2.325 ; 2.325 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1617 ; 2.323 ; 2.323 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2020 ; 3.323 ; 3.473 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2021 ; 3.324 ; 3.475 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1453 ; 3.002 ; 2.636 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1450 ; 2.980 ; 2.633 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2130 ; 4.457 ; 3.827 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3534 ; 6.174 ;19.490 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3534 ; 6.171 ;19.489 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 - 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4-2.8M SODIUM POTASSIUM PHOSPHATE, REMARK 280 PH 7.4 - 8.2, 10MM DTT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.95000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 373 REMARK 465 GLY A 374 REMARK 465 ASP A 375 REMARK 465 THR A 376 REMARK 465 ALA A 377 REMARK 465 THR A 378 REMARK 465 CYS A 379 REMARK 465 CYS A 380 REMARK 465 ALA A 381 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 OD1 ND2 REMARK 470 LYS A 15 NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 ASN A 32 CG OD1 ND2 REMARK 470 GLN A 38 CD OE1 NE2 REMARK 470 LYS A 41 CE NZ REMARK 470 LYS A 97 CE NZ REMARK 470 LYS A 106 CD CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 LYS A 133 CE NZ REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 260 CD OE1 OE2 REMARK 470 LYS A 267 CE NZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 297 CE NZ REMARK 470 LYS A 353 NZ REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 ASN A 384 CG OD1 ND2 REMARK 470 THR A 385 OG1 CG2 REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 ASP A 387 CG OD1 OD2 REMARK 470 LYS A 388 CD CE NZ REMARK 470 ILE A 417 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 823 O HOH A 832 1.90 REMARK 500 OD2 ASP A 268 O HOH A 601 2.10 REMARK 500 OE2 GLU A 148 O HOH A 602 2.10 REMARK 500 OE2 GLU A 143 O HOH A 603 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 176 CG - SD - CE ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 52.11 33.73 REMARK 500 ASN A 110 71.82 -153.33 REMARK 500 ASN A 121 116.21 -36.78 REMARK 500 ALA A 165 66.69 -105.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 93T A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PG A 505 DBREF 5NP8 A 1 417 UNP P00558 PGK1_HUMAN 1 417 SEQADV 5NP8 GLY A -2 UNP P00558 EXPRESSION TAG SEQADV 5NP8 SER A -1 UNP P00558 EXPRESSION TAG SEQADV 5NP8 HIS A 0 UNP P00558 EXPRESSION TAG SEQRES 1 A 420 GLY SER HIS MET SER LEU SER ASN LYS LEU THR LEU ASP SEQRES 2 A 420 LYS LEU ASP VAL LYS GLY LYS ARG VAL VAL MET ARG VAL SEQRES 3 A 420 ASP PHE ASN VAL PRO MET LYS ASN ASN GLN ILE THR ASN SEQRES 4 A 420 ASN GLN ARG ILE LYS ALA ALA VAL PRO SER ILE LYS PHE SEQRES 5 A 420 CYS LEU ASP ASN GLY ALA LYS SER VAL VAL LEU MET SER SEQRES 6 A 420 HIS LEU GLY ARG PRO ASP GLY VAL PRO MET PRO ASP LYS SEQRES 7 A 420 TYR SER LEU GLU PRO VAL ALA VAL GLU LEU LYS SER LEU SEQRES 8 A 420 LEU GLY LYS ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY SEQRES 9 A 420 PRO GLU VAL GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY SEQRES 10 A 420 SER VAL ILE LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU SEQRES 11 A 420 GLU GLU GLY LYS GLY LYS ASP ALA SER GLY ASN LYS VAL SEQRES 12 A 420 LYS ALA GLU PRO ALA LYS ILE GLU ALA PHE ARG ALA SER SEQRES 13 A 420 LEU SER LYS LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE SEQRES 14 A 420 GLY THR ALA HIS ARG ALA HIS SER SER MET VAL GLY VAL SEQRES 15 A 420 ASN LEU PRO GLN LYS ALA GLY GLY PHE LEU MET LYS LYS SEQRES 16 A 420 GLU LEU ASN TYR PHE ALA LYS ALA LEU GLU SER PRO GLU SEQRES 17 A 420 ARG PRO PHE LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA SEQRES 18 A 420 ASP LYS ILE GLN LEU ILE ASN ASN MET LEU ASP LYS VAL SEQRES 19 A 420 ASN GLU MET ILE ILE GLY GLY GLY MET ALA PHE THR PHE SEQRES 20 A 420 LEU LYS VAL LEU ASN ASN MET GLU ILE GLY THR SER LEU SEQRES 21 A 420 PHE ASP GLU GLU GLY ALA LYS ILE VAL LYS ASP LEU MET SEQRES 22 A 420 SER LYS ALA GLU LYS ASN GLY VAL LYS ILE THR LEU PRO SEQRES 23 A 420 VAL ASP PHE VAL THR ALA ASP LYS PHE ASP GLU ASN ALA SEQRES 24 A 420 LYS THR GLY GLN ALA THR VAL ALA SER GLY ILE PRO ALA SEQRES 25 A 420 GLY TRP MET GLY LEU ASP CYS GLY PRO GLU SER SER LYS SEQRES 26 A 420 LYS TYR ALA GLU ALA VAL THR ARG ALA LYS GLN ILE VAL SEQRES 27 A 420 TRP ASN GLY PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE SEQRES 28 A 420 ALA ARG GLY THR LYS ALA LEU MET ASP GLU VAL VAL LYS SEQRES 29 A 420 ALA THR SER ARG GLY CYS ILE THR ILE ILE GLY GLY GLY SEQRES 30 A 420 ASP THR ALA THR CYS CYS ALA LYS TRP ASN THR GLU ASP SEQRES 31 A 420 LYS VAL SER HIS VAL SER THR GLY GLY GLY ALA SER LEU SEQRES 32 A 420 GLU LEU LEU GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA SEQRES 33 A 420 LEU SER ASN ILE HET 93T A 501 23 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET 3PG A 505 11 HETNAM 93T 3-[2-(4-BROMOPHENYL)-5,7-DIMETHYL-PYRAZOLO[1,5- HETNAM 2 93T A]PYRIMIDIN-6-YL]PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 93T C17 H16 BR N3 O2 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 3PG C3 H7 O7 P FORMUL 7 HOH *234(H2 O) HELIX 1 AA1 THR A 8 LEU A 12 5 5 HELIX 2 AA2 ASN A 37 ASN A 53 1 17 HELIX 3 AA3 LEU A 78 GLY A 90 1 13 HELIX 4 AA4 GLY A 101 ASN A 110 1 10 HELIX 5 AA5 ASN A 121 HIS A 125 5 5 HELIX 6 AA6 GLU A 143 LYS A 156 1 14 HELIX 7 AA7 ALA A 165 ALA A 169 5 5 HELIX 8 AA8 HIS A 173 GLY A 178 1 6 HELIX 9 AA9 GLY A 187 SER A 203 1 17 HELIX 10 AB1 VAL A 217 ASP A 219 5 3 HELIX 11 AB2 LYS A 220 VAL A 231 1 12 HELIX 12 AB3 MET A 240 ASN A 250 1 11 HELIX 13 AB4 ASP A 259 LYS A 264 1 6 HELIX 14 AB5 ILE A 265 GLY A 277 1 13 HELIX 15 AB6 GLY A 317 ALA A 331 1 15 HELIX 16 AB7 TRP A 345 PHE A 348 5 4 HELIX 17 AB8 ALA A 349 ARG A 365 1 17 HELIX 18 AB9 ASN A 384 VAL A 389 1 6 HELIX 19 AC1 GLY A 395 GLU A 404 1 10 HELIX 20 AC2 LEU A 408 ALA A 413 1 6 SHEET 1 AA1 6 LEU A 94 LEU A 96 0 SHEET 2 AA1 6 SER A 115 LEU A 119 1 O LEU A 118 N LEU A 94 SHEET 3 AA1 6 SER A 57 MET A 61 1 N LEU A 60 O ILE A 117 SHEET 4 AA1 6 ARG A 18 ARG A 22 1 N VAL A 19 O VAL A 59 SHEET 5 AA1 6 VAL A 160 ASN A 163 1 O VAL A 162 N ARG A 22 SHEET 6 AA1 6 LYS A 184 GLY A 186 1 O ALA A 185 N TYR A 161 SHEET 1 AA2 2 MET A 29 LYS A 30 0 SHEET 2 AA2 2 GLN A 33 ILE A 34 -1 O GLN A 33 N LYS A 30 SHEET 1 AA3 2 LYS A 131 LYS A 133 0 SHEET 2 AA3 2 LYS A 139 LYS A 141 -1 O VAL A 140 N GLY A 132 SHEET 1 AA4 6 LYS A 279 THR A 281 0 SHEET 2 AA4 6 GLU A 233 ILE A 236 1 N MET A 234 O THR A 281 SHEET 3 AA4 6 PHE A 208 LEU A 212 1 N LEU A 212 O ILE A 235 SHEET 4 AA4 6 GLN A 333 ASN A 337 1 O ASN A 337 N ILE A 211 SHEET 5 AA4 6 ILE A 368 ILE A 371 1 O ILE A 370 N TRP A 336 SHEET 6 AA4 6 HIS A 391 VAL A 392 1 O HIS A 391 N ILE A 371 SHEET 1 AA5 3 THR A 298 THR A 302 0 SHEET 2 AA5 3 ASP A 285 ALA A 289 -1 N PHE A 286 O ALA A 301 SHEET 3 AA5 3 MET A 312 CYS A 316 -1 O MET A 312 N ALA A 289 CISPEP 1 ASN A 31 ASN A 32 0 -8.05 CISPEP 2 ARG A 206 PRO A 207 0 5.63 SITE 1 AC1 7 LYS A 11 GLY A 238 GLY A 239 LEU A 257 SITE 2 AC1 7 PHE A 292 GLY A 313 LEU A 314 SITE 1 AC2 2 LYS A 146 PHE A 150 SITE 1 AC3 3 LYS A 6 ASP A 412 LEU A 414 SITE 1 AC4 4 TRP A 336 GLY A 338 PRO A 339 HOH A 686 SITE 1 AC5 11 ASP A 24 ASN A 26 ARG A 39 HIS A 63 SITE 2 AC5 11 ARG A 66 ARG A 123 GLY A 167 ARG A 171 SITE 3 AC5 11 HOH A 696 HOH A 706 HOH A 757 CRYST1 35.870 103.900 50.650 90.00 99.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027878 0.000000 0.004465 0.00000 SCALE2 0.000000 0.009625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019995 0.00000